Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001598

Physical Location & Seq

Genomic Coordinates Reverse (-)

2093883 .. 2097239

Gene Structure 3357 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G06780.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGTAGGTCTACACATTAATATGGAAGCGCAGATTCATATACTTGAGCAGGAAGCTTATTCTGCTGTATTAAGAGCTTTTCAAGCACAGGCTGATGAATTTTCTTGGGATAAAGCAACCGTGATGACAAACCTACGTAAAGAATTGAGGATATCTGATGATGAAAACCGACAACTGTTGAACAATGTCCATAATGATGATCTTATCAAAAGAATAAGAGATTCGAGACCAAGAGGTGGAAACCAGGTTGTTAGACATCAGTCCCTCGATGTTCATCCTAGTCCGACTTTTTCAGCTTCTCGGAAGAAACAGAAGACGTTCCAATCCTATCCGTCGATTGGTTCTACTAGAAGTAAGTCATTCAATAACCGTGTAGTATCAGCAAATGAACCTGCGGAAGCTCTTATTGGAAGAAAAGTGTGGACAAAATGGCCTGAAGACAACAGCTTTTATGAAGCAGTAGTTACACAATACAATGCAAATGAGGGTCGACATGCGTTGGTATATGATATAAACACAGTGAATGAGACATGGGAATGGGTTGATCTTAATGAGATTCCAACGAAAGATATAAGATGGGATGGAGAGGAAGATGGGGTAACTTTGAATGTAGGACATGGCGGTGGAACAACTCGTGGGAATCGAAGGACCTTAAGCCATGGTGGTAGAGGGAGAGGTCCAAGAACTCAGCCAAGAAGAGAACATTTAGCAACGGAAAACGGTGGTGGGAGGAAGTTTTTCGGTGAGATTGAATTGTTCAACACAGACTCACTTGTGAAAGAGGTCGAGAGAGTTTTTGATTCAAACCTTCCTGATCCACATGAGCTTGATAAGGCCAAGAAGCTACTCAAGGAACATGAACAGGCGCTTATTGCTGCCATTGCAAGGCTTACGGATGCTTCTGATTACGAAAGCGATGGAGAAGAACCGTATTCGCATGAGCTTCCAATGCTGCTGGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0009266 GO:0009408 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009791 GO:0010228 GO:0022414 GO:0032501 GO:0032502 GO:0043207 GO:0048608 GO:0048731 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0061458 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ENT

Protein Analysis

320

Amino Acids

36.35

Weight (kDa)

5.88

Isoelectric Point (pI)

40.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ENT	PF03735	3 - 70	3.8e-27	ENT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001598)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12140 AT3G12140 AT3G12140 AT5G06780 AT5G06780
fragaria_vesca	FvH4_6g22490 FvH4_6g22490 FvH4_6g22490 FvH4_6g22490 FvH4_6g22490 FvH4_6g22490 FvH4_6g22490 FvH4_6g22490 FvH4_6g22490 FvH4_6g22490 FvH4_6g22490 FvH4_6g22490 FvH4_6g22490 FvH4_6g22490 FvH4_6g22490 FvH4_6g22490 FvH4_6g22490 FvH4_6g22490
malus_domestica	MD12G1058900.v1.1 MD14G1059100.v1.1
prunus_persica	Prupe.7G075700_v2.0.a1 Prupe.7G075700_v2.0.a1 Prupe.7G075700_v2.0.a1 Prupe.7G075700_v2.0.a1 Prupe.7G075700_v2.0.a1 Prupe.7G075700_v2.0.a1 Prupe.7G075700_v2.0.a1 Prupe.7G075700_v2.0.a1 Prupe.7G075700_v2.0.a1
pyrus_communis	pycom12g05200 pycom14g04800
rosa_chinensis	RchiOBHm_Chr3g0479901
rosa_laevigata	RLG00000023526
rosa_multiflora	Rmu_sc0003400.1_g000027
rosa_roxburghii	Rroxscaffold_6G00401910
rosa_rugosa	Rorug03G0179300 Rorug03G0179300 Rorug03G0179400 Rorug03G0179500
rosa_samantha	Rh3AG230400 Rh3BG263000 Rh3CG260600 Rh3DG256400
rosa_wichuraiana	Rw0G015230 Rw3G020750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	400
AccB7I	CCANNNNNTGG	1 cut(s)	236
AccI	GTMKAC	2 cut(s)	10, 490
AciI	CCGC	2 cut(s)	395, 621
AclWI	GGATC	1 cut(s)	809
AcsI	RAATTY	1 cut(s)	98
AcuI	CTGAAG	1 cut(s)	456
AfiI	CCNNNNNNNGG	3 cut(s)	236, 338, 885
AflII	CTTAAG	1 cut(s)	652
AgsI	TTSAA	7 cut(s)	83, 181, 364, 607, 752, 760, 804
AjnI	CCWGG	1 cut(s)	243
AjuI	GAANNNNNNNTTGG	2 cut(s)	390, 422
AluBI	AGCT	8 cut(s)	56, 77, 296, 401, 447, 826, 844, 943
AluI	AGCT	8 cut(s)	56, 77, 296, 401, 447, 826, 844, 943
Alw26I	GTCTC	2 cut(s)	220, 521
AlwI	GGATC	1 cut(s)	809
AoxI	GGCC	2 cut(s)	431, 834
ApeKI	GCWGC	2 cut(s)	875, 952
ApoI	RAATTY	1 cut(s)	98
AseI	ATTAAT	1 cut(s)	18
Asp700I	GAANNNNTTC	2 cut(s)	317, 737
AspLEI	GCGC	2 cut(s)	31, 868
AspS9I	GGNCC	2 cut(s)	648, 677
AsuHPI	GGTGA	1 cut(s)	755
AvaII	GGWCC	2 cut(s)	648, 677
BauI	CACGAG	1 cut(s)	633
BbsI	GAAGAC	2 cut(s)	320, 444
BbvI	GCAGC	2 cut(s)	862, 939
BccI	CCATC	4 cut(s)	570, 575, 587, 911
BciT130I	CCWGG	1 cut(s)	245
BcoDI	GTCTC	2 cut(s)	220, 521
BfaI	CTAG	2 cut(s)	279, 348
BfoI	RGCGCY	1 cut(s)	869
BfrI	CTTAAG	1 cut(s)	652
BfuAI	ACCTGC	1 cut(s)	400
BisI	GCNGC	2 cut(s)	876, 953
BlsI	GCNGC	2 cut(s)	877, 954
Bme1390I	CCNGG	1 cut(s)	245
Bme18I	GGWCC	2 cut(s)	648, 677
BmgT120I	GGNCC	2 cut(s)	648, 677
BmrFI	CCNGG	1 cut(s)	245
BmsI	GCATC	1 cut(s)	886
BoxI	GACNNNNGTC	1 cut(s)	259
BpiI	GAAGAC	2 cut(s)	320, 444
BpuEI	CTTGAG	2 cut(s)	65, 833
BsaAI	YACGTR	1 cut(s)	137
BsaBI	GATNNNNATC	1 cut(s)	273
BsaI	GGTCTC	1 cut(s)	220
BsaJI	CCNNGG	1 cut(s)	658
Bsc4I	CCNNNNNNNGG	3 cut(s)	236, 338, 885
Bse3DI	GCAATG	1 cut(s)	879
Bse8I	GATNNNNATC	1 cut(s)	273
BseBI	CCWGG	1 cut(s)	245
BseDI	CCNNGG	1 cut(s)	658
BseGI	GGATG	3 cut(s)	274, 586, 901
BseJI	GATNNNNATC	1 cut(s)	273
BseLI	CCNNNNNNNGG	3 cut(s)	236, 338, 885
BseMI	GCAATG	1 cut(s)	879
BseMII	CTCAG	1 cut(s)	701
BseXI	GCAGC	2 cut(s)	862, 939
BseYI	CCCAGC	1 cut(s)	955
BshFI	GGCC	2 cut(s)	433, 836
BslFI	GGGAC	1 cut(s)	247
BslI	CCNNNNNNNGG	3 cut(s)	236, 338, 885
BsmAI	GTCTC	2 cut(s)	220, 521
BsmFI	GGGAC	1 cut(s)	247
BsnI	GGCC	2 cut(s)	433, 836
Bso31I	GGTCTC	1 cut(s)	220
Bsp143I	GATC	3 cut(s)	199, 544, 814
Bsp19I	CCATGG	1 cut(s)	658
BspACI	CCGC	2 cut(s)	395, 621
BspANI	GGCC	2 cut(s)	433, 836
BspCNI	CTCAG	1 cut(s)	700
BspMI	ACCTGC	1 cut(s)	400
BspPI	GGATC	1 cut(s)	809
BspTI	CTTAAG	1 cut(s)	652
BspTNI	GGTCTC	1 cut(s)	220
BsrDI	GCAATG	1 cut(s)	879
BssECI	CCNNGG	1 cut(s)	658
BssMI	GATC	3 cut(s)	199, 544, 814
BssSI	CACGAG	1 cut(s)	633
BssT1I	CCWWGG	1 cut(s)	658
Bst2BI	CACGAG	1 cut(s)	633
Bst2UI	CCWGG	1 cut(s)	245
Bst4CI	ACNGT	6 cut(s)	121, 177, 371, 520, 722, 930
Bst6I	CTCTTC	1 cut(s)	691
BstAFI	CTTAAG	1 cut(s)	652
BstBAI	YACGTR	1 cut(s)	137
BstDEI	CTNAG	1 cut(s)	687
BstDSI	CCRYGG	1 cut(s)	658
BstF5I	GGATG	3 cut(s)	274, 586, 901
BstH2I	RGCGCY	1 cut(s)	869
BstHHI	GCGC	2 cut(s)	31, 868
BstKTI	GATC	3 cut(s)	202, 547, 817
BstMAI	GTCTC	2 cut(s)	220, 521
BstMBI	GATC	3 cut(s)	199, 544, 814
BstMWI	GCNNNNNNNGC	5 cut(s)	62, 83, 872, 881, 949
BstNI	CCWGG	1 cut(s)	245
BstNSI	RCATGY	1 cut(s)	497
BstPAI	GACNNNNGTC	1 cut(s)	259
BstSCI	CCNGG	1 cut(s)	243
BstSNI	TACGTA	1 cut(s)	137
BstV1I	GCAGC	2 cut(s)	862, 939
BstV2I	GAAGAC	2 cut(s)	320, 444
BsuRI	GGCC	2 cut(s)	433, 836
BtgI	CCRYGG	1 cut(s)	658
BtgZI	GCGATG	1 cut(s)	930
BtsCI	GGATG	3 cut(s)	274, 586, 901
BtsIMutI	CAGTG	1 cut(s)	525
BveI	ACCTGC	1 cut(s)	400
CfoI	GCGC	2 cut(s)	31, 868
Cfr13I	GGNCC	2 cut(s)	648, 677
CsiI	ACCWGGT	1 cut(s)	243
CviAII	CATG	7 cut(s)	494, 531, 617, 659, 821, 857, 938
DdeI	CTNAG	1 cut(s)	687
DpnI	GATC	3 cut(s)	201, 546, 816
DpnII	GATC	3 cut(s)	199, 544, 814
Eam1104I	CTCTTC	1 cut(s)	691
EarI	CTCTTC	1 cut(s)	691
Eco105I	TACGTA	1 cut(s)	137
Eco130I	CCWWGG	1 cut(s)	658
Eco31I	GGTCTC	1 cut(s)	220
Eco32I	GATATC	1 cut(s)	153
Eco47I	GGWCC	2 cut(s)	648, 677
Eco57I	CTGAAG	1 cut(s)	456
EcoO109I	RGGNCCY	1 cut(s)	648
EcoRII	CCWGG	1 cut(s)	243
EcoRV	GATATC	1 cut(s)	153
EcoT14I	CCWWGG	1 cut(s)	658
ErhI	CCWWGG	1 cut(s)	658
FaeI	CATG	7 cut(s)	497, 534, 620, 662, 824, 860, 941
FaqI	GGGAC	1 cut(s)	247
FatI	CATG	7 cut(s)	493, 530, 616, 658, 820, 856, 937
FblI	GTMKAC	2 cut(s)	10, 490
Fnu4HI	GCNGC	2 cut(s)	876, 953
FokI	GGATG	3 cut(s)	261, 593, 908
Fsp4HI	GCNGC	2 cut(s)	876, 953
FspBI	CTAG	2 cut(s)	279, 348
GlaI	GCGC	2 cut(s)	30, 867
GluI	GCNGC	2 cut(s)	876, 953
GsaI	CCCAGC	1 cut(s)	959
HaeII	RGCGCY	1 cut(s)	869
HaeIII	GGCC	2 cut(s)	433, 836
HhaI	GCGC	2 cut(s)	31, 868
Hin1II	CATG	7 cut(s)	497, 534, 620, 662, 824, 860, 941
Hin6I	GCGC	2 cut(s)	29, 866
HinP1I	GCGC	2 cut(s)	29, 866
HincII	GTYRAC	1 cut(s)	491
HindII	GTYRAC	1 cut(s)	491
HindIII	AAGCTT	1 cut(s)	54
HinfI	GANTC	6 cut(s)	34, 221, 556, 640, 767, 800
HphI	GGTGA	1 cut(s)	755
Hpy166II	GTNNAC	3 cut(s)	11, 423, 491
Hpy188I	TCNGA	4 cut(s)	157, 285, 303, 904
Hpy188III	TCNNGA	3 cut(s)	225, 787, 812
Hpy8I	GTNNAC	3 cut(s)	11, 423, 491
Hpy99I	CGWCG	1 cut(s)	337
HpyAV	CCTTC	2 cut(s)	639, 818
HpyCH4III	ACNGT	6 cut(s)	121, 177, 371, 520, 722, 930
HpyCH4IV	ACGT	2 cut(s)	136, 317
HpyCH4V	TGCA	2 cut(s)	479, 884
HpyF10VI	GCNNNNNNNGC	5 cut(s)	62, 83, 872, 881, 949
HpyF3I	CTNAG	1 cut(s)	687
HpySE526I	ACGT	2 cut(s)	136, 317
Hsp92II	CATG	7 cut(s)	497, 534, 620, 662, 824, 860, 941
HspAI	GCGC	2 cut(s)	29, 866
Kzo9I	GATC	3 cut(s)	199, 544, 814
LpnPI	CCDG	9 cut(s)	35, 74, 230, 257, 405, 447, 825, 848, 941
Lsp1109I	GCAGC	2 cut(s)	862, 939
LweI	GCATC	1 cut(s)	886
MabI	ACCWGGT	1 cut(s)	243
MaeI	CTAG	2 cut(s)	279, 348
MaeII	ACGT	2 cut(s)	136, 317
MaeIII	GTNAC	2 cut(s)	463, 598
MalI	GATC	3 cut(s)	201, 546, 816
MboI	GATC	3 cut(s)	199, 544, 814
MboII	GAAGA	7 cut(s)	316, 325, 423, 449, 602, 708, 935
MluCI	AATT	3 cut(s)	98, 143, 752
MlyI	GAGTC	1 cut(s)	761
MmeI	TCCRAC	2 cut(s)	308, 584
MnlI	CCTC	9 cut(s)	141, 227, 275, 478, 580, 662, 668, 723, 775
MroXI	GAANNNNTTC	2 cut(s)	317, 737
MseI	TTAA	4 cut(s)	18, 71, 549, 653
MslI	CAYNNNNRTG	4 cut(s)	20, 195, 535, 621
MspCI	CTTAAG	1 cut(s)	652
MspR9I	CCNGG	1 cut(s)	245
MvaI	CCWGG	1 cut(s)	245
MwoI	GCNNNNNNNGC	5 cut(s)	62, 83, 872, 881, 949
NcoI	CCATGG	1 cut(s)	658
NdeII	GATC	3 cut(s)	199, 544, 814
NlaIII	CATG	7 cut(s)	497, 534, 620, 662, 824, 860, 941
NspI	RCATGY	1 cut(s)	497
PcsI	WCGNNNNNNNCGW	1 cut(s)	640
PdmI	GAANNNNTTC	2 cut(s)	317, 737
PfeI	GAWTC	5 cut(s)	34, 221, 556, 640, 800
PflMI	CCANNNNNTGG	1 cut(s)	236
PkrI	GCNGC	2 cut(s)	877, 954
PleI	GAGTC	1 cut(s)	761
PpsI	GAGTC	1 cut(s)	761
Ppu21I	YACGTR	1 cut(s)	137
PpuMI	RGGWCCY	1 cut(s)	648
PshAI	GACNNNNGTC	1 cut(s)	259
PshBI	ATTAAT	1 cut(s)	18
Psp5II	RGGWCCY	1 cut(s)	648
Psp6I	CCWGG	1 cut(s)	243
PspFI	CCCAGC	1 cut(s)	955
PspGI	CCWGG	1 cut(s)	243
PspPI	GGNCC	2 cut(s)	648, 677
PspPPI	RGGWCCY	1 cut(s)	648
RseI	CAYNNNNRTG	4 cut(s)	20, 195, 535, 621
SalI	GTCGAC	1 cut(s)	489
SaqAI	TTAA	4 cut(s)	18, 71, 549, 653
SatI	GCNGC	2 cut(s)	876, 953
Sau3AI	GATC	3 cut(s)	199, 544, 814
Sau96I	GGNCC	2 cut(s)	648, 677
SchI	GAGTC	1 cut(s)	761
ScrFI	CCNGG	1 cut(s)	245
SexAI	ACCWGGT	1 cut(s)	243
SfaNI	GCATC	1 cut(s)	886
SinI	GGWCC	2 cut(s)	648, 677
SmiMI	CAYNNNNRTG	4 cut(s)	20, 195, 535, 621
SmlI	CTYRAG	3 cut(s)	44, 652, 848
SmoI	CTYRAG	3 cut(s)	44, 652, 848
SnaBI	TACGTA	1 cut(s)	137
Sse9I	AATT	3 cut(s)	98, 143, 752
SsiI	CCGC	2 cut(s)	395, 621
SspMI	CTAG	2 cut(s)	279, 348
StyD4I	CCNGG	1 cut(s)	243
StyI	CCWWGG	1 cut(s)	658
TaaI	ACNGT	6 cut(s)	121, 177, 371, 520, 722, 930
TaiI	ACGT	2 cut(s)	139, 320
TaqI	TCGA	6 cut(s)	224, 267, 335, 490, 643, 786
TasI	AATT	3 cut(s)	98, 143, 752
TfiI	GAWTC	5 cut(s)	34, 221, 556, 640, 800
Tru1I	TTAA	4 cut(s)	18, 71, 549, 653
Tru9I	TTAA	4 cut(s)	18, 71, 549, 653
TscAI	CASTG	1 cut(s)	525
TseI	GCWGC	2 cut(s)	875, 952
TspDTI	ATGAA	7 cut(s)	26, 111, 177, 263, 402, 468, 873
TspGWI	ACGGA	3 cut(s)	321, 728, 908
TspRI	CASTG	1 cut(s)	525
Van91I	CCANNNNNTGG	1 cut(s)	236
Vha464I	CTTAAG	1 cut(s)	652
VpaK11BI	GGWCC	2 cut(s)	648, 677
VspI	ATTAAT	1 cut(s)	18
XapI	RAATTY	1 cut(s)	98
XceI	RCATGY	1 cut(s)	497
XmiI	GTMKAC	2 cut(s)	10, 490
XmnI	GAANNNNTTC	2 cut(s)	317, 737
XspI	CTAG	2 cut(s)	279, 348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.