Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008503

Physical Location & Seq

Genomic Coordinates Reverse (-)

3908940 .. 3910475

Gene Structure 1536 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G12260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGCGGCACCATTCGCGTTGAGGAAAATCGGTGTTCCTCCGAACTCGGCGAACCTGACGGAAGCTCGCCGCCGTGTTTTCGATTTCTTTAGAGCTGCCTGTAGATCTATCCCCACCATCATGGACATTTACAATCTTCAAGATGTCGTCGCTCCTTCTCAGCTCCGCTATGCTATCTCTGCTCAGATTCGGAATAACGCTCACATCACCGATCCTAAGGTAATTGATCTTCTTATATTCAAAGGAATGGAAGAGCTGACTGACATTGTGGATCACGCAAAGCAGCGTCACCACATCATCGGTCAATATGTGGTGGGTGAAGGGCTCGTGCAGAATACTGGAAACAAGGATCAAGGAAAGACTGATTTTCTCAAGAATTTCTACACCAGCAACTACTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Complex1_LYR

Protein Analysis

133

Amino Acids

15.08

Weight (kDa)

9.13

Isoelectric Point (pI)

50.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12260
fragaria_vesca	FvH4_7g03540
malus_domestica	MD02G1279300.v1.1 MD07G1047200.v1.1
prunus_persica	Prupe.2G041500_v2.0.a1
pyrus_communis	pycom02g23930 pycom07g03410
rosa_chinensis	RchiOBHm_Chr1g0325871 RchiOBHm_Chr1g0325941
rosa_laevigata	RLG00000030098
rosa_multiflora	Rmu_sc0008679.1_g000002 Rmu_sc0008679.1_g000022 Rmu_sc0013657.1_g000004
rosa_roxburghii	Rroxscaffold_4G00324220
rosa_rugosa	Rorug01G0055800
rosa_samantha	Rh1AG072000 Rh1BG058900 Rh1CG071400 Rh1DG076200 Rh1DG076400 Rh1DG076700 Rh1DG077000
rosa_wichuraiana	Rw1G005850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	7
AccII	CGCG	1 cut(s)	17
AciI	CCGC	3 cut(s)	5, 70, 166
AclWI	GGATC	3 cut(s)	206, 279, 357
AcsI	RAATTY	1 cut(s)	376
AgsI	TTSAA	2 cut(s)	140, 241
AluBI	AGCT	4 cut(s)	65, 95, 163, 256
AluI	AGCT	4 cut(s)	65, 95, 163, 256
AlwI	GGATC	3 cut(s)	206, 279, 357
ApeKI	GCWGC	2 cut(s)	95, 283
ApoI	RAATTY	1 cut(s)	376
AsuHPI	GGTGA	3 cut(s)	199, 281, 329
AxyI	CCTNAGG	1 cut(s)	216
BanI	GGYRCC	1 cut(s)	7
BanII	GRGCYC	1 cut(s)	327
BarI	GAAGNNNNNNTAC	2 cut(s)	213, 245
BauI	CACGAG	1 cut(s)	326
BbvI	GCAGC	2 cut(s)	82, 295
BccI	CCATC	1 cut(s)	125
BceAI	ACGGC	1 cut(s)	57
BfmI	CTRYAG	1 cut(s)	100
BglII	AGATCT	1 cut(s)	104
BisI	GCNGC	4 cut(s)	6, 70, 96, 284
BlsI	GCNGC	4 cut(s)	7, 71, 97, 285
BmiI	GGNNCC	1 cut(s)	9
BpuEI	CTTGAG	1 cut(s)	356
Bse1I	ACTGG	1 cut(s)	343
Bse21I	CCTNAGG	1 cut(s)	216
BseMII	CTCAG	2 cut(s)	173, 197
BseNI	ACTGG	1 cut(s)	343
BseXI	GCAGC	2 cut(s)	82, 295
BsgI	GTGCAG	1 cut(s)	350
Bsh1236I	CGCG	1 cut(s)	17
BshNI	GGYRCC	1 cut(s)	7
Bsp1286I	GDGCHC	1 cut(s)	327
Bsp143I	GATC	5 cut(s)	104, 211, 226, 271, 349
BspACI	CCGC	3 cut(s)	5, 70, 166
BspCNI	CTCAG	2 cut(s)	172, 196
BspFNI	CGCG	1 cut(s)	17
BspLI	GGNNCC	1 cut(s)	9
BspPI	GGATC	3 cut(s)	206, 279, 357
BspQI	GCTCTTC	1 cut(s)	246
BspT107I	GGYRCC	1 cut(s)	7
BsrI	ACTGG	1 cut(s)	343
BssMI	GATC	5 cut(s)	104, 211, 226, 271, 349
BssSI	CACGAG	1 cut(s)	326
Bst2BI	CACGAG	1 cut(s)	326
Bst6I	CTCTTC	1 cut(s)	246
BstC8I	GCNNGC	1 cut(s)	67
BstDEI	CTNAG	3 cut(s)	159, 183, 216
BstFNI	CGCG	1 cut(s)	17
BstKTI	GATC	5 cut(s)	107, 214, 229, 274, 352
BstMBI	GATC	5 cut(s)	104, 211, 226, 271, 349
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 179
BstSFI	CTRYAG	1 cut(s)	100
BstUI	CGCG	1 cut(s)	17
BstV1I	GCAGC	2 cut(s)	82, 295
BstX2I	RGATCY	1 cut(s)	104
BstXI	CCANNNNNNTGG	1 cut(s)	121
BstYI	RGATCY	1 cut(s)	104
Bsu36I	CCTNAGG	1 cut(s)	216
Cac8I	GCNNGC	1 cut(s)	67
CseI	GACGC	1 cut(s)	275
CviAII	CATG	1 cut(s)	121
CviJI	RGCY	5 cut(s)	65, 95, 163, 256, 325
CviKI_1	RGCY	5 cut(s)	65, 95, 163, 256, 325
DdeI	CTNAG	3 cut(s)	159, 183, 216
DpnI	GATC	5 cut(s)	106, 213, 228, 273, 351
DpnII	GATC	5 cut(s)	104, 211, 226, 271, 349
Eam1104I	CTCTTC	1 cut(s)	246
EarI	CTCTTC	1 cut(s)	246
Eco24I	GRGCYC	1 cut(s)	327
Eco81I	CCTNAGG	1 cut(s)	216
EcoT38I	GRGCYC	1 cut(s)	327
FaeI	CATG	1 cut(s)	124
FaiI	YATR	4 cut(s)	122, 171, 236, 309
FatI	CATG	1 cut(s)	120
Fnu4HI	GCNGC	4 cut(s)	6, 70, 96, 284
FriOI	GRGCYC	1 cut(s)	327
Fsp4HI	GCNGC	4 cut(s)	6, 70, 96, 284
GluI	GCNGC	4 cut(s)	6, 70, 96, 284
HgaI	GACGC	1 cut(s)	275
Hin1II	CATG	1 cut(s)	124
HinfI	GANTC	1 cut(s)	187
HphI	GGTGA	3 cut(s)	199, 281, 329
Hpy188I	TCNGA	3 cut(s)	42, 186, 192
Hpy188III	TCNNGA	2 cut(s)	140, 373
Hpy99I	CGWCG	1 cut(s)	152
HpyAV	CCTTC	2 cut(s)	165, 314
HpyCH4V	TGCA	1 cut(s)	331
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 179
HpyF3I	CTNAG	3 cut(s)	159, 183, 216
Hsp92II	CATG	1 cut(s)	124
Kzo9I	GATC	5 cut(s)	104, 211, 226, 271, 349
LguI	GCTCTTC	1 cut(s)	246
LmnI	GCTCC	2 cut(s)	157, 168
LpnPI	CCDG	3 cut(s)	68, 112, 324
Lsp1109I	GCAGC	2 cut(s)	82, 295
MaeIII	GTNAC	1 cut(s)	287
MalI	GATC	5 cut(s)	106, 213, 228, 273, 351
MboI	GATC	5 cut(s)	104, 211, 226, 271, 349
MboII	GAAGA	3 cut(s)	128, 221, 263
MflI	RGATCY	1 cut(s)	104
MhlI	GDGCHC	1 cut(s)	327
MluCI	AATT	2 cut(s)	222, 376
MnlI	CCTC	2 cut(s)	15, 48
MslI	CAYNNNNRTG	1 cut(s)	119
MvnI	CGCG	1 cut(s)	17
MwoI	GCNNNNNNNGC	2 cut(s)	14, 179
NdeII	GATC	5 cut(s)	104, 211, 226, 271, 349
NlaIII	CATG	1 cut(s)	124
NlaIV	GGNNCC	1 cut(s)	9
NmeAIII	GCCGAG	1 cut(s)	26
NmuCI	GTSAC	1 cut(s)	287
PciSI	GCTCTTC	1 cut(s)	246
PfeI	GAWTC	1 cut(s)	187
PkrI	GCNGC	4 cut(s)	7, 71, 97, 285
PspN4I	GGNNCC	1 cut(s)	9
PsuI	RGATCY	1 cut(s)	104
RseI	CAYNNNNRTG	1 cut(s)	119
SapI	GCTCTTC	1 cut(s)	246
SatI	GCNGC	4 cut(s)	6, 70, 96, 284
Sau3AI	GATC	5 cut(s)	104, 211, 226, 271, 349
SduI	GDGCHC	1 cut(s)	327
SetI	ASST	6 cut(s)	57, 67, 97, 165, 222, 258
SfcI	CTRYAG	1 cut(s)	100
SmiMI	CAYNNNNRTG	1 cut(s)	119
SmlI	CTYRAG	1 cut(s)	371
SmoI	CTYRAG	1 cut(s)	371
Sse9I	AATT	2 cut(s)	222, 376
SsiI	CCGC	3 cut(s)	5, 70, 166
TaqI	TCGA	1 cut(s)	81
TaqII	GACCGA	1 cut(s)	290
TasI	AATT	2 cut(s)	222, 376
TauI	GCSGC	2 cut(s)	8, 72
TfiI	GAWTC	1 cut(s)	187
TseFI	GTSAC	1 cut(s)	287
TseI	GCWGC	2 cut(s)	95, 283
Tsp45I	GTSAC	1 cut(s)	287
TspGWI	ACGGA	1 cut(s)	74
XapI	RAATTY	1 cut(s)	376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.