Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0008503

Physical Location & Seq

Genomic Coordinates Reverse (-)

4552547 .. 4554701

Gene Structure 2155 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G041500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGTCGTTTATTCAACGCGCCGTGAAGGTGCCGCCCAACTCGGTGTCTCTGGAAGAAGCCAGGCACCGAGTCTTCGACTTCTTCAGGGCCGCCTGCAGATCCATACCCACCATCATGGAAATCTACAACCTAGACGACGTCGTTGCTCCCTCTCACCTCCGCTCCGTCGTCGCCTCCGAGATCCGCAAGAACTCCTCCGTCACTAACCCTAAGGTCATCGATATGCTTCTCTTCAAGGCAATGGAAGAGTTAAATAACATCACTGAGCATGCAAAGCAGCGACACCACATCATTGGCCAGTATGTGGTGGGTCACCAAGGGCTTGTGCAGGATTTGGGCACCAAGGATCAGGGGGCCTCTGGTTTTCTCAAAGATTTTTATAAGAGCAATTATTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Complex1_LYR

Protein Analysis

133

Amino Acids

15.01

Weight (kDa)

8.76

Isoelectric Point (pI)

49.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12260
fragaria_vesca	FvH4_7g03540
malus_domestica	MD02G1279300.v1.1 MD07G1047200.v1.1
prunus_persica	Prupe.2G041500_v2.0.a1
pyrus_communis	pycom02g23930 pycom07g03410
rosa_chinensis	RchiOBHm_Chr1g0325871 RchiOBHm_Chr1g0325941
rosa_laevigata	RLG00000030098
rosa_multiflora	Rmu_sc0008679.1_g000002 Rmu_sc0008679.1_g000022 Rmu_sc0013657.1_g000004
rosa_roxburghii	Rroxscaffold_4G00324220
rosa_rugosa	Rorug01G0055800
rosa_samantha	Rh1AG072000 Rh1BG058900 Rh1CG071400 Rh1DG076200 Rh1DG076400 Rh1DG076700 Rh1DG077000
rosa_wichuraiana	Rw1G005850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	381
AatII	GACGTC	1 cut(s)	141
AccB1I	GGYRCC	3 cut(s)	28, 63, 338
AccB7I	CCANNNNNTGG	1 cut(s)	304
AccBSI	CCGCTC	1 cut(s)	162
AccII	CGCG	1 cut(s)	18
AciI	CCGC	4 cut(s)	32, 90, 160, 184
AclWI	GGATC	3 cut(s)	93, 175, 354
AcoI	YGGCCR	1 cut(s)	295
AcuI	CTGAAG	1 cut(s)	67
AcyI	GRCGYC	1 cut(s)	138
AfiI	CCNNNNNNNGG	1 cut(s)	304
AgsI	TTSAA	2 cut(s)	14, 235
AjnI	CCWGG	1 cut(s)	59
Alw26I	GTCTC	1 cut(s)	51
AlwI	GGATC	3 cut(s)	93, 175, 354
AoxI	GGCC	3 cut(s)	87, 295, 354
ApeKI	GCWGC	1 cut(s)	277
AspLEI	GCGC	1 cut(s)	20
AspS9I	GGNCC	2 cut(s)	87, 354
AsuHPI	GGTGA	2 cut(s)	146, 305
AxyI	CCTNAGG	1 cut(s)	210
BaeGI	GKGCMC	1 cut(s)	341
BalI	TGGCCA	1 cut(s)	297
BanI	GGYRCC	3 cut(s)	28, 63, 338
BbsI	GAAGAC	1 cut(s)	64
BbvI	GCAGC	1 cut(s)	289
BccI	CCATC	1 cut(s)	119
BceAI	ACGGC	1 cut(s)	5
BcgI	CGANNNNNNTGC	2 cut(s)	125, 159
BciT130I	CCWGG	1 cut(s)	61
BcoDI	GTCTC	1 cut(s)	51
BfaI	CTAG	1 cut(s)	131
BfmI	CTRYAG	1 cut(s)	94
BisI	GCNGC	3 cut(s)	32, 90, 278
BlsI	GCNGC	3 cut(s)	33, 91, 279
Bme1390I	CCNGG	1 cut(s)	61
BmgT120I	GGNCC	2 cut(s)	87, 354
BmiI	GGNNCC	4 cut(s)	30, 65, 340, 355
BmrFI	CCNGG	1 cut(s)	61
BpiI	GAAGAC	1 cut(s)	64
Bsa29I	ATCGAT	1 cut(s)	219
BsaHI	GRCGYC	1 cut(s)	138
BsaJI	CCNNGG	2 cut(s)	316, 342
BsaXI	ACNNNNNCTCC	2 cut(s)	146, 176
Bsc4I	CCNNNNNNNGG	1 cut(s)	304
Bse1I	ACTGG	1 cut(s)	298
Bse21I	CCTNAGG	1 cut(s)	210
Bse3DI	GCAATG	1 cut(s)	246
BseBI	CCWGG	1 cut(s)	61
BseCI	ATCGAT	1 cut(s)	219
BseDI	CCNNGG	2 cut(s)	316, 342
BseLI	CCNNNNNNNGG	1 cut(s)	304
BseMI	GCAATG	1 cut(s)	246
BseMII	CTCAG	1 cut(s)	255
BseNI	ACTGG	1 cut(s)	298
BseRI	GAGGAG	1 cut(s)	184
BseSI	GKGCMC	1 cut(s)	341
BseXI	GCAGC	1 cut(s)	289
BsgI	GTGCAG	1 cut(s)	347
Bsh1236I	CGCG	1 cut(s)	18
BshFI	GGCC	3 cut(s)	89, 297, 356
BshNI	GGYRCC	3 cut(s)	28, 63, 338
BshVI	ATCGAT	1 cut(s)	219
BslI	CCNNNNNNNGG	1 cut(s)	304
BsmAI	GTCTC	1 cut(s)	51
BsnI	GGCC	3 cut(s)	89, 297, 356
Bsp1286I	GDGCHC	1 cut(s)	341
Bsp143I	GATC	3 cut(s)	98, 180, 346
BspACI	CCGC	4 cut(s)	32, 90, 160, 184
BspANI	GGCC	3 cut(s)	89, 297, 356
BspCNI	CTCAG	1 cut(s)	256
BspDI	ATCGAT	1 cut(s)	219
BspFNI	CGCG	1 cut(s)	18
BspLI	GGNNCC	4 cut(s)	30, 65, 340, 355
BspMAI	CTGCAG	1 cut(s)	98
BspPI	GGATC	3 cut(s)	93, 175, 354
BspT107I	GGYRCC	3 cut(s)	28, 63, 338
BsrBI	CCGCTC	1 cut(s)	162
BsrDI	GCAATG	1 cut(s)	246
BsrI	ACTGG	1 cut(s)	298
BssECI	CCNNGG	2 cut(s)	316, 342
BssMI	GATC	3 cut(s)	98, 180, 346
BssNI	GRCGYC	1 cut(s)	138
BssT1I	CCWWGG	2 cut(s)	316, 342
Bst2UI	CCWGG	1 cut(s)	61
Bst6I	CTCTTC	2 cut(s)	236, 240
BstACI	GRCGYC	1 cut(s)	138
BstC8I	GCNNGC	2 cut(s)	94, 270
BstDEI	CTNAG	2 cut(s)	210, 264
BstEII	GGTNACC	1 cut(s)	311
BstFNI	CGCG	1 cut(s)	18
BstHHI	GCGC	1 cut(s)	20
BstKTI	GATC	3 cut(s)	101, 183, 349
BstMAI	GTCTC	1 cut(s)	51
BstMBI	GATC	3 cut(s)	98, 180, 346
BstMWI	GCNNNNNNNGC	1 cut(s)	274
BstNI	CCWGG	1 cut(s)	61
BstNSI	RCATGY	1 cut(s)	272
BstPI	GGTNACC	1 cut(s)	311
BstSCI	CCNGG	1 cut(s)	59
BstSFI	CTRYAG	1 cut(s)	94
BstSLI	GKGCMC	1 cut(s)	341
BstUI	CGCG	1 cut(s)	18
BstV1I	GCAGC	1 cut(s)	289
BstV2I	GAAGAC	1 cut(s)	64
BstX2I	RGATCY	2 cut(s)	98, 180
BstXI	CCANNNNNNTGG	2 cut(s)	115, 293
BstYI	RGATCY	2 cut(s)	98, 180
Bsu15I	ATCGAT	1 cut(s)	219
Bsu36I	CCTNAGG	1 cut(s)	210
BsuRI	GGCC	3 cut(s)	89, 297, 356
BsuTUI	ATCGAT	1 cut(s)	219
BtsIMutI	CAGTG	1 cut(s)	261
Cac8I	GCNNGC	2 cut(s)	94, 270
CfoI	GCGC	1 cut(s)	20
Cfr13I	GGNCC	2 cut(s)	87, 354
ClaI	ATCGAT	1 cut(s)	219
CviAII	CATG	2 cut(s)	115, 269
CviJI	RGCY	5 cut(s)	59, 89, 297, 322, 356
CviKI_1	RGCY	5 cut(s)	59, 89, 297, 322, 356
DdeI	CTNAG	2 cut(s)	210, 264
DpnI	GATC	3 cut(s)	100, 182, 348
DpnII	GATC	3 cut(s)	98, 180, 346
EaeI	YGGCCR	1 cut(s)	295
Eam1104I	CTCTTC	2 cut(s)	236, 240
EarI	CTCTTC	2 cut(s)	236, 240
Eco130I	CCWWGG	2 cut(s)	316, 342
Eco57I	CTGAAG	1 cut(s)	67
Eco81I	CCTNAGG	1 cut(s)	210
Eco91I	GGTNACC	1 cut(s)	311
EcoO109I	RGGNCCY	1 cut(s)	354
EcoO65I	GGTNACC	1 cut(s)	311
EcoRII	CCWGG	1 cut(s)	59
EcoT14I	CCWWGG	2 cut(s)	316, 342
ErhI	CCWWGG	2 cut(s)	316, 342
FaeI	CATG	2 cut(s)	118, 272
FaiI	YATR	6 cut(s)	104, 116, 224, 270, 303, 381
FatI	CATG	2 cut(s)	114, 268
Fnu4HI	GCNGC	3 cut(s)	32, 90, 278
Fsp4HI	GCNGC	3 cut(s)	32, 90, 278
FspBI	CTAG	1 cut(s)	131
GlaI	GCGC	1 cut(s)	19
GluI	GCNGC	3 cut(s)	32, 90, 278
HaeIII	GGCC	3 cut(s)	89, 297, 356
HhaI	GCGC	1 cut(s)	20
Hin1I	GRCGYC	1 cut(s)	138
Hin1II	CATG	2 cut(s)	118, 272
Hin6I	GCGC	1 cut(s)	18
HinP1I	GCGC	1 cut(s)	18
HinfI	GANTC	1 cut(s)	69
HphI	GGTGA	2 cut(s)	146, 305
Hpy188I	TCNGA	1 cut(s)	178
Hpy188III	TCNNGA	1 cut(s)	50
Hpy99I	CGWCG	4 cut(s)	140, 143, 170, 173
HpyAV	CCTTC	1 cut(s)	19
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	3 cut(s)	96, 272, 328
HpyF10VI	GCNNNNNNNGC	1 cut(s)	274
HpyF3I	CTNAG	2 cut(s)	210, 264
HpySE526I	ACGT	1 cut(s)	138
Hsp92I	GRCGYC	1 cut(s)	138
Hsp92II	CATG	2 cut(s)	118, 272
HspAI	GCGC	1 cut(s)	18
Kzo9I	GATC	3 cut(s)	98, 180, 346
LmnI	GCTCC	2 cut(s)	151, 167
LpnPI	CCDG	9 cut(s)	35, 46, 70, 73, 106, 311, 314, 335, 345
Lsp1109I	GCAGC	1 cut(s)	289
MaeI	CTAG	1 cut(s)	131
MaeII	ACGT	1 cut(s)	138
MaeIII	GTNAC	2 cut(s)	199, 311
MalI	GATC	3 cut(s)	100, 182, 348
MbiI	CCGCTC	1 cut(s)	162
MboI	GATC	3 cut(s)	98, 180, 346
MboII	GAAGA	5 cut(s)	64, 65, 73, 223, 257
MflI	RGATCY	2 cut(s)	98, 180
MhlI	GDGCHC	1 cut(s)	341
MlsI	TGGCCA	1 cut(s)	297
MluCI	AATT	1 cut(s)	388
MluNI	TGGCCA	1 cut(s)	297
MlyI	GAGTC	1 cut(s)	78
MnlI	CCTC	5 cut(s)	160, 167, 184, 205, 367
Mox20I	TGGCCA	1 cut(s)	297
MscI	TGGCCA	1 cut(s)	297
MseI	TTAA	1 cut(s)	251
MslI	CAYNNNNRTG	2 cut(s)	113, 221
Msp20I	TGGCCA	1 cut(s)	297
MspR9I	CCNGG	1 cut(s)	61
MvaI	CCWGG	1 cut(s)	61
MvnI	CGCG	1 cut(s)	18
MwoI	GCNNNNNNNGC	1 cut(s)	274
NdeII	GATC	3 cut(s)	98, 180, 346
NlaIII	CATG	2 cut(s)	118, 272
NlaIV	GGNNCC	4 cut(s)	30, 65, 340, 355
NmuCI	GTSAC	2 cut(s)	199, 311
NspI	RCATGY	1 cut(s)	272
PaeI	GCATGC	1 cut(s)	272
PcsI	WCGNNNNNNNCGW	1 cut(s)	174
PflFI	GACNNNGTC	1 cut(s)	137
PflMI	CCANNNNNTGG	1 cut(s)	304
PkrI	GCNGC	3 cut(s)	33, 91, 279
PleI	GAGTC	1 cut(s)	77
PpsI	GAGTC	1 cut(s)	77
PsiI	TTATAA	1 cut(s)	381
Psp6I	CCWGG	1 cut(s)	59
PspEI	GGTNACC	1 cut(s)	311
PspGI	CCWGG	1 cut(s)	59
PspN4I	GGNNCC	4 cut(s)	30, 65, 340, 355
PspPI	GGNCC	2 cut(s)	87, 354
PstI	CTGCAG	1 cut(s)	98
PsuI	RGATCY	2 cut(s)	98, 180
PsyI	GACNNNGTC	1 cut(s)	137
RseI	CAYNNNNRTG	2 cut(s)	113, 221
SaqAI	TTAA	1 cut(s)	251
SatI	GCNGC	3 cut(s)	32, 90, 278
Sau3AI	GATC	3 cut(s)	98, 180, 346
Sau96I	GGNCC	2 cut(s)	87, 354
SchI	GAGTC	1 cut(s)	78
ScrFI	CCNGG	1 cut(s)	61
SduI	GDGCHC	1 cut(s)	341
SetI	ASST	5 cut(s)	30, 132, 141, 159, 216
SfcI	CTRYAG	1 cut(s)	94
SmiMI	CAYNNNNRTG	2 cut(s)	113, 221
SphI	GCATGC	1 cut(s)	272
Sse9I	AATT	1 cut(s)	388
SsiI	CCGC	4 cut(s)	32, 90, 160, 184
SspMI	CTAG	1 cut(s)	131
StyD4I	CCNGG	1 cut(s)	59
StyI	CCWWGG	2 cut(s)	316, 342
TaiI	ACGT	1 cut(s)	141
TaqI	TCGA	2 cut(s)	75, 219
TasI	AATT	1 cut(s)	388
TauI	GCSGC	2 cut(s)	34, 92
Tru1I	TTAA	1 cut(s)	251
Tru9I	TTAA	1 cut(s)	251
TscAI	CASTG	1 cut(s)	268
TseFI	GTSAC	2 cut(s)	199, 311
TseI	GCWGC	1 cut(s)	277
Tsp45I	GTSAC	2 cut(s)	199, 311
TspGWI	ACGGA	2 cut(s)	154, 187
TspRI	CASTG	1 cut(s)	268
Tth111I	GACNNNGTC	1 cut(s)	137
Van91I	CCANNNNNTGG	1 cut(s)	304
XceI	RCATGY	1 cut(s)	272
XspI	CTAG	1 cut(s)	131
ZraI	GACGTC	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.