Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008503

Physical Location & Seq

Genomic Coordinates Reverse (-)

14069288 .. 14069518

Gene Structure 231 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55561

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGTCGTTCACACTCGGAGTGCCACCGAACTCGGTCTCTCTCGACGAAGCCCGGCACCGAGTCTTCGACTTCTTCAGGGCCGCCTGCAGATCCATCCCTACAGTCATGGACATCTACAACCTTCACGACGTCGTCGCCCCATCTCACCTCGGCTCCGTCGTCGCCGCCGAGATCCGCAAGCACGCCTCCGTCACCAACCCCAAGGTCCCCCCCCCCCTTCTTTATCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Complex1_LYR

Protein Analysis

76

Amino Acids

8.35

Weight (kDa)

8.0

Isoelectric Point (pI)

47.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12260
fragaria_vesca	FvH4_7g03540
malus_domestica	MD02G1279300.v1.1 MD07G1047200.v1.1
prunus_persica	Prupe.2G041500_v2.0.a1
pyrus_communis	pycom02g23930 pycom07g03410
rosa_chinensis	RchiOBHm_Chr1g0325871 RchiOBHm_Chr1g0325941
rosa_laevigata	RLG00000030098
rosa_multiflora	Rmu_sc0008679.1_g000002 Rmu_sc0008679.1_g000022 Rmu_sc0013657.1_g000004
rosa_roxburghii	Rroxscaffold_4G00324220
rosa_rugosa	Rorug01G0055800
rosa_samantha	Rh1AG072000 Rh1BG058900 Rh1CG071400 Rh1DG076200 Rh1DG076400 Rh1DG076700 Rh1DG077000
rosa_wichuraiana	Rw1G005850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	132
AccB1I	GGYRCC	1 cut(s)	54
AciI	CCGC	3 cut(s)	81, 165, 175
AclWI	GGATC	2 cut(s)	84, 166
AcuI	CTGAAG	1 cut(s)	58
AcyI	GRCGYC	1 cut(s)	129
Alw26I	GTCTC	1 cut(s)	40
AlwI	GGATC	2 cut(s)	84, 166
AoxI	GGCC	1 cut(s)	78
AspS9I	GGNCC	2 cut(s)	78, 205
AsuC2I	CCSGG	1 cut(s)	52
AsuHPI	GGTGA	2 cut(s)	137, 184
AvaII	GGWCC	1 cut(s)	205
BanI	GGYRCC	1 cut(s)	54
BbsI	GAAGAC	1 cut(s)	55
BccI	CCATC	2 cut(s)	101, 148
BcnI	CCSGG	1 cut(s)	52
BcoDI	GTCTC	1 cut(s)	40
BfaI	CTAG	1 cut(s)	229
BfmI	CTRYAG	2 cut(s)	85, 99
BisI	GCNGC	2 cut(s)	81, 165
BlsI	GCNGC	2 cut(s)	82, 166
Bme1390I	CCNGG	1 cut(s)	52
Bme18I	GGWCC	1 cut(s)	205
BmgT120I	GGNCC	2 cut(s)	78, 205
BmiI	GGNNCC	3 cut(s)	56, 154, 207
BmrFI	CCNGG	1 cut(s)	52
BpiI	GAAGAC	1 cut(s)	55
BpuMI	CCSGG	1 cut(s)	52
BsaHI	GRCGYC	1 cut(s)	129
BsaI	GGTCTC	1 cut(s)	40
BsaJI	CCNNGG	2 cut(s)	148, 201
BsaXI	ACNNNNNCTCC	2 cut(s)	137, 167
BseDI	CCNNGG	2 cut(s)	148, 201
BseGI	GGATG	1 cut(s)	93
BshFI	GGCC	1 cut(s)	80
BshNI	GGYRCC	1 cut(s)	54
BsiSI	CCGG	1 cut(s)	52
BslFI	GGGAC	1 cut(s)	191
BsmAI	GTCTC	1 cut(s)	40
BsmFI	GGGAC	1 cut(s)	191
BsnI	GGCC	1 cut(s)	80
Bso31I	GGTCTC	1 cut(s)	40
Bsp143I	GATC	2 cut(s)	89, 171
BspACI	CCGC	3 cut(s)	81, 165, 175
BspANI	GGCC	1 cut(s)	80
BspLI	GGNNCC	3 cut(s)	56, 154, 207
BspMAI	CTGCAG	1 cut(s)	89
BspPI	GGATC	2 cut(s)	84, 166
BspT107I	GGYRCC	1 cut(s)	54
BspTNI	GGTCTC	1 cut(s)	40
BssECI	CCNNGG	2 cut(s)	148, 201
BssMI	GATC	2 cut(s)	89, 171
BssNI	GRCGYC	1 cut(s)	129
BssT1I	CCWWGG	1 cut(s)	201
Bst4CI	ACNGT	1 cut(s)	103
BstACI	GRCGYC	1 cut(s)	129
BstC8I	GCNNGC	3 cut(s)	85, 179, 183
BstF5I	GGATG	1 cut(s)	93
BstKTI	GATC	2 cut(s)	92, 174
BstMAI	GTCTC	1 cut(s)	40
BstMBI	GATC	2 cut(s)	89, 171
BstSCI	CCNGG	1 cut(s)	50
BstSFI	CTRYAG	2 cut(s)	85, 99
BstV2I	GAAGAC	1 cut(s)	55
BstX2I	RGATCY	2 cut(s)	89, 171
BstYI	RGATCY	2 cut(s)	89, 171
BsuRI	GGCC	1 cut(s)	80
BtsCI	GGATG	1 cut(s)	93
Cac8I	GCNNGC	3 cut(s)	85, 179, 183
Cfr13I	GGNCC	2 cut(s)	78, 205
CviAII	CATG	1 cut(s)	106
CviJI	RGCY	3 cut(s)	50, 80, 153
CviKI_1	RGCY	3 cut(s)	50, 80, 153
DpnI	GATC	2 cut(s)	91, 173
DpnII	GATC	2 cut(s)	89, 171
Eco130I	CCWWGG	1 cut(s)	201
Eco31I	GGTCTC	1 cut(s)	40
Eco47I	GGWCC	1 cut(s)	205
Eco57I	CTGAAG	1 cut(s)	58
EcoO109I	RGGNCCY	1 cut(s)	205
EcoT14I	CCWWGG	1 cut(s)	201
ErhI	CCWWGG	1 cut(s)	201
FaeI	CATG	1 cut(s)	109
FaiI	YATR	1 cut(s)	107
FaqI	GGGAC	1 cut(s)	191
FatI	CATG	1 cut(s)	105
Fnu4HI	GCNGC	2 cut(s)	81, 165
FokI	GGATG	1 cut(s)	80
Fsp4HI	GCNGC	2 cut(s)	81, 165
FspBI	CTAG	1 cut(s)	229
GluI	GCNGC	2 cut(s)	81, 165
HaeIII	GGCC	1 cut(s)	80
HapII	CCGG	1 cut(s)	52
Hin1I	GRCGYC	1 cut(s)	129
Hin1II	CATG	1 cut(s)	109
HinfI	GANTC	1 cut(s)	60
HpaII	CCGG	1 cut(s)	52
HphI	GGTGA	2 cut(s)	137, 184
Hpy166II	GTNNAC	1 cut(s)	9
Hpy188I	TCNGA	1 cut(s)	17
Hpy188III	TCNNGA	2 cut(s)	41, 125
Hpy8I	GTNNAC	1 cut(s)	9
Hpy99I	CGWCG	6 cut(s)	47, 131, 134, 137, 161, 164
HpyAV	CCTTC	2 cut(s)	131, 227
HpyCH4III	ACNGT	1 cut(s)	103
HpyCH4IV	ACGT	1 cut(s)	129
HpyCH4V	TGCA	1 cut(s)	87
HpySE526I	ACGT	1 cut(s)	129
Hsp92I	GRCGYC	1 cut(s)	129
Hsp92II	CATG	1 cut(s)	109
Kzo9I	GATC	2 cut(s)	89, 171
LmnI	GCTCC	1 cut(s)	158
LpnPI	CCDG	3 cut(s)	61, 65, 97
MaeI	CTAG	1 cut(s)	229
MaeII	ACGT	1 cut(s)	129
MaeIII	GTNAC	1 cut(s)	190
MalI	GATC	2 cut(s)	91, 173
MboI	GATC	2 cut(s)	89, 171
MboII	GAAGA	2 cut(s)	55, 64
MflI	RGATCY	2 cut(s)	89, 171
MlyI	GAGTC	1 cut(s)	69
MnlI	CCTC	2 cut(s)	158, 196
MspI	CCGG	1 cut(s)	52
MspR9I	CCNGG	1 cut(s)	52
NciI	CCSGG	1 cut(s)	52
NdeII	GATC	2 cut(s)	89, 171
NlaIII	CATG	1 cut(s)	109
NlaIV	GGNNCC	3 cut(s)	56, 154, 207
NmeAIII	GCCGAG	2 cut(s)	129, 193
NmuCI	GTSAC	1 cut(s)	190
PcsI	WCGNNNNNNNCGW	2 cut(s)	156, 165
PflFI	GACNNNGTC	1 cut(s)	131
PkrI	GCNGC	2 cut(s)	82, 166
PleI	GAGTC	1 cut(s)	68
PpsI	GAGTC	1 cut(s)	68
PpuMI	RGGWCCY	1 cut(s)	205
Psp5II	RGGWCCY	1 cut(s)	205
PspN4I	GGNNCC	3 cut(s)	56, 154, 207
PspPI	GGNCC	2 cut(s)	78, 205
PspPPI	RGGWCCY	1 cut(s)	205
PstI	CTGCAG	1 cut(s)	89
PsuI	RGATCY	2 cut(s)	89, 171
PsyI	GACNNNGTC	1 cut(s)	131
SatI	GCNGC	2 cut(s)	81, 165
Sau3AI	GATC	2 cut(s)	89, 171
Sau96I	GGNCC	2 cut(s)	78, 205
SchI	GAGTC	1 cut(s)	69
ScrFI	CCNGG	1 cut(s)	52
SetI	ASST	4 cut(s)	123, 132, 150, 207
SfcI	CTRYAG	2 cut(s)	85, 99
SinI	GGWCC	1 cut(s)	205
SsiI	CCGC	3 cut(s)	81, 165, 175
SspMI	CTAG	1 cut(s)	229
StyD4I	CCNGG	1 cut(s)	50
StyI	CCWWGG	1 cut(s)	201
TaaI	ACNGT	1 cut(s)	103
TaiI	ACGT	1 cut(s)	132
TaqI	TCGA	2 cut(s)	42, 66
TaqII	GACCGA	1 cut(s)	22
TauI	GCSGC	2 cut(s)	83, 167
TseFI	GTSAC	1 cut(s)	190
Tsp45I	GTSAC	1 cut(s)	190
TspGWI	ACGGA	2 cut(s)	145, 178
Tth111I	GACNNNGTC	1 cut(s)	131
VpaK11BI	GGWCC	1 cut(s)	205
XspI	CTAG	1 cut(s)	229
ZraI	GACGTC	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.