Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0008503

Physical Location & Seq

Genomic Coordinates Reverse (-)

14108035 .. 14108698

Gene Structure 664 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG076400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGTCGTTCACACTGCGGAGCGTGAAGTTGCCACCGAACTCGGTCTCTCTCGACGAAGCCCGGCACCGAGTCTTCGACTTCTTCAGGGCCGCCTGCAGATCCATCCCTACAGTCATGGACATCTACAACCTTCACGACGTCGTCGCCCCATCTCACCTCCGCTCCGTCGTCGCCGCCGAGATCCGCAAGCACGCCTCCGTCACCAACCCCAAGATGCATTGTTCCTGCTTTGCATCAAAAAGCTTCATTGTCAAAGAATTTAAGCTTGGATCTTTGCGATCGCAACCTCTCGGTTTCTGTGACATTTCGTTTGTTGGGTTCTATGGTGGTAGTGGAGGTCAGACATTGAGGGGGGTATTGGATTTGGAGTGTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Complex1_LYR

Protein Analysis

125

Amino Acids

13.84

Weight (kDa)

8.95

Isoelectric Point (pI)

61.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12260
fragaria_vesca	FvH4_7g03540
malus_domestica	MD02G1279300.v1.1 MD07G1047200.v1.1
prunus_persica	Prupe.2G041500_v2.0.a1
pyrus_communis	pycom02g23930 pycom07g03410
rosa_chinensis	RchiOBHm_Chr1g0325871 RchiOBHm_Chr1g0325941
rosa_laevigata	RLG00000030098
rosa_multiflora	Rmu_sc0008679.1_g000002 Rmu_sc0008679.1_g000022 Rmu_sc0013657.1_g000004
rosa_roxburghii	Rroxscaffold_4G00324220
rosa_rugosa	Rorug01G0055800
rosa_samantha	Rh1AG072000 Rh1BG058900 Rh1CG071400 Rh1DG076200 Rh1DG076400 Rh1DG076700 Rh1DG077000
rosa_wichuraiana	Rw1G005850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	141
AccB1I	GGYRCC	1 cut(s)	63
AccBSI	CCGCTC	1 cut(s)	162
AciI	CCGC	5 cut(s)	16, 90, 160, 174, 184
AclWI	GGATC	3 cut(s)	93, 175, 277
AcsI	RAATTY	1 cut(s)	257
AcuI	CTGAAG	1 cut(s)	67
AcyI	GRCGYC	1 cut(s)	138
AjuI	GAANNNNNNNTTGG	2 cut(s)	249, 281
AluBI	AGCT	2 cut(s)	243, 265
AluI	AGCT	2 cut(s)	243, 265
Alw26I	GTCTC	1 cut(s)	49
AlwI	GGATC	3 cut(s)	93, 175, 277
AoxI	GGCC	1 cut(s)	87
ApoI	RAATTY	1 cut(s)	257
ArsI	GACNNNNNNTTYG	2 cut(s)	293, 325
AsiSI	GCGATCGC	1 cut(s)	281
AspS9I	GGNCC	1 cut(s)	87
AsuC2I	CCSGG	1 cut(s)	61
AsuHPI	GGTGA	2 cut(s)	146, 193
BanI	GGYRCC	1 cut(s)	63
BbsI	GAAGAC	1 cut(s)	64
BccI	CCATC	2 cut(s)	110, 157
BcnI	CCSGG	1 cut(s)	61
BcoDI	GTCTC	1 cut(s)	49
BfmI	CTRYAG	2 cut(s)	94, 108
BisI	GCNGC	2 cut(s)	90, 174
BlsI	GCNGC	2 cut(s)	91, 175
Bme1390I	CCNGG	1 cut(s)	61
BmgT120I	GGNCC	1 cut(s)	87
BmiI	GGNNCC	1 cut(s)	65
BmrFI	CCNGG	1 cut(s)	61
BmsI	GCATC	2 cut(s)	204, 242
BpiI	GAAGAC	1 cut(s)	64
BpuMI	CCSGG	1 cut(s)	61
BsaHI	GRCGYC	1 cut(s)	138
BsaI	GGTCTC	1 cut(s)	49
BsaXI	ACNNNNNCTCC	2 cut(s)	146, 176
BseGI	GGATG	1 cut(s)	102
Bsh1285I	CGRYCG	1 cut(s)	281
BshFI	GGCC	1 cut(s)	89
BshNI	GGYRCC	1 cut(s)	63
BsiEI	CGRYCG	1 cut(s)	281
BsiSI	CCGG	1 cut(s)	61
BsmAI	GTCTC	1 cut(s)	49
BsnI	GGCC	1 cut(s)	89
Bso31I	GGTCTC	1 cut(s)	49
Bsp143I	GATC	4 cut(s)	98, 180, 269, 278
BspACI	CCGC	5 cut(s)	16, 90, 160, 174, 184
BspANI	GGCC	1 cut(s)	89
BspLI	GGNNCC	1 cut(s)	65
BspMAI	CTGCAG	1 cut(s)	98
BspPI	GGATC	3 cut(s)	93, 175, 277
BspT107I	GGYRCC	1 cut(s)	63
BspTNI	GGTCTC	1 cut(s)	49
BsrBI	CCGCTC	1 cut(s)	162
BssMI	GATC	4 cut(s)	98, 180, 269, 278
BssNI	GRCGYC	1 cut(s)	138
Bst4CI	ACNGT	1 cut(s)	112
BstACI	GRCGYC	1 cut(s)	138
BstC8I	GCNNGC	3 cut(s)	94, 188, 192
BstF5I	GGATG	1 cut(s)	102
BstKTI	GATC	4 cut(s)	101, 183, 272, 281
BstMAI	GTCTC	1 cut(s)	49
BstMBI	GATC	4 cut(s)	98, 180, 269, 278
BstMCI	CGRYCG	1 cut(s)	281
BstSCI	CCNGG	1 cut(s)	59
BstSFI	CTRYAG	2 cut(s)	94, 108
BstV2I	GAAGAC	1 cut(s)	64
BstX2I	RGATCY	3 cut(s)	98, 180, 269
BstYI	RGATCY	3 cut(s)	98, 180, 269
BsuRI	GGCC	1 cut(s)	89
BtsCI	GGATG	1 cut(s)	102
BtsI	GCAGTG	1 cut(s)	11
BtsIMutI	CAGTG	1 cut(s)	11
Cac8I	GCNNGC	3 cut(s)	94, 188, 192
Cfr13I	GGNCC	1 cut(s)	87
CviAII	CATG	1 cut(s)	115
CviJI	RGCY	4 cut(s)	59, 89, 243, 265
CviKI_1	RGCY	4 cut(s)	59, 89, 243, 265
DpnI	GATC	4 cut(s)	100, 182, 271, 280
DpnII	GATC	4 cut(s)	98, 180, 269, 278
Eco31I	GGTCTC	1 cut(s)	49
Eco57I	CTGAAG	1 cut(s)	67
EcoT22I	ATGCAT	1 cut(s)	219
FaeI	CATG	1 cut(s)	118
FaiI	YATR	2 cut(s)	116, 324
FatI	CATG	1 cut(s)	114
Fnu4HI	GCNGC	2 cut(s)	90, 174
FokI	GGATG	1 cut(s)	89
Fsp4HI	GCNGC	2 cut(s)	90, 174
GluI	GCNGC	2 cut(s)	90, 174
HaeIII	GGCC	1 cut(s)	89
HapII	CCGG	1 cut(s)	61
Hin1I	GRCGYC	1 cut(s)	138
Hin1II	CATG	1 cut(s)	118
HindIII	AAGCTT	2 cut(s)	241, 263
HinfI	GANTC	1 cut(s)	69
HpaII	CCGG	1 cut(s)	61
HphI	GGTGA	2 cut(s)	146, 193
Hpy166II	GTNNAC	1 cut(s)	9
Hpy188I	TCNGA	1 cut(s)	342
Hpy188III	TCNNGA	2 cut(s)	50, 134
Hpy8I	GTNNAC	1 cut(s)	9
Hpy99I	CGWCG	6 cut(s)	56, 140, 143, 146, 170, 173
HpyAV	CCTTC	1 cut(s)	140
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	3 cut(s)	96, 217, 233
HpySE526I	ACGT	1 cut(s)	138
Hsp92I	GRCGYC	1 cut(s)	138
Hsp92II	CATG	1 cut(s)	118
Kzo9I	GATC	4 cut(s)	98, 180, 269, 278
LmnI	GCTCC	2 cut(s)	18, 167
LpnPI	CCDG	4 cut(s)	70, 74, 106, 238
LweI	GCATC	2 cut(s)	204, 242
MaeII	ACGT	1 cut(s)	138
MaeIII	GTNAC	2 cut(s)	199, 299
MalI	GATC	4 cut(s)	100, 182, 271, 280
MbiI	CCGCTC	1 cut(s)	162
MboI	GATC	4 cut(s)	98, 180, 269, 278
MboII	GAAGA	2 cut(s)	64, 73
MflI	RGATCY	3 cut(s)	98, 180, 269
MluCI	AATT	1 cut(s)	257
MlyI	GAGTC	1 cut(s)	78
MnlI	CCTC	5 cut(s)	167, 205, 297, 329, 342
Mph1103I	ATGCAT	1 cut(s)	219
MseI	TTAA	1 cut(s)	261
MspI	CCGG	1 cut(s)	61
MspR9I	CCNGG	1 cut(s)	61
NciI	CCSGG	1 cut(s)	61
NdeII	GATC	4 cut(s)	98, 180, 269, 278
NlaIII	CATG	1 cut(s)	118
NlaIV	GGNNCC	1 cut(s)	65
NmeAIII	GCCGAG	1 cut(s)	202
NmuCI	GTSAC	2 cut(s)	199, 299
NsiI	ATGCAT	1 cut(s)	219
PcsI	WCGNNNNNNNCGW	1 cut(s)	174
PflFI	GACNNNGTC	1 cut(s)	140
PkrI	GCNGC	2 cut(s)	91, 175
Ple19I	CGATCG	1 cut(s)	281
PleI	GAGTC	1 cut(s)	77
PpsI	GAGTC	1 cut(s)	77
PspN4I	GGNNCC	1 cut(s)	65
PspPI	GGNCC	1 cut(s)	87
PstI	CTGCAG	1 cut(s)	98
PsuI	RGATCY	3 cut(s)	98, 180, 269
PsyI	GACNNNGTC	1 cut(s)	140
PvuI	CGATCG	1 cut(s)	281
RgaI	GCGATCGC	1 cut(s)	281
SaqAI	TTAA	1 cut(s)	261
SatI	GCNGC	2 cut(s)	90, 174
Sau3AI	GATC	4 cut(s)	98, 180, 269, 278
Sau96I	GGNCC	1 cut(s)	87
SchI	GAGTC	1 cut(s)	78
ScrFI	CCNGG	1 cut(s)	61
SetI	ASST	7 cut(s)	132, 141, 159, 245, 267, 289, 340
SfaAI	GCGATCGC	1 cut(s)	281
SfaNI	GCATC	2 cut(s)	204, 242
SfcI	CTRYAG	2 cut(s)	94, 108
SgfI	GCGATCGC	1 cut(s)	281
Sse9I	AATT	1 cut(s)	257
SsiI	CCGC	5 cut(s)	16, 90, 160, 174, 184
StyD4I	CCNGG	1 cut(s)	59
TaaI	ACNGT	1 cut(s)	112
TaiI	ACGT	1 cut(s)	141
TaqI	TCGA	2 cut(s)	51, 75
TaqII	GACCGA	1 cut(s)	31
TasI	AATT	1 cut(s)	257
TauI	GCSGC	2 cut(s)	92, 176
Tru1I	TTAA	1 cut(s)	261
Tru9I	TTAA	1 cut(s)	261
TscAI	CASTG	1 cut(s)	18
TseFI	GTSAC	2 cut(s)	199, 299
Tsp45I	GTSAC	2 cut(s)	199, 299
TspDTI	ATGAA	1 cut(s)	235
TspGWI	ACGGA	2 cut(s)	154, 187
TspRI	CASTG	1 cut(s)	18
Tth111I	GACNNNGTC	1 cut(s)	140
XapI	RAATTY	1 cut(s)	257
ZraI	GACGTC	1 cut(s)	139
Zsp2I	ATGCAT	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.