Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008679.1

Orthogroup ID

OG0008503

Physical Location & Seq

Genomic Coordinates Reverse (-)

74656 .. 77505

Gene Structure 2850 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008679.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

atgtcgttcacactccggagcgtgaaggtgccaccgaactcggtctctctcgacgaagcccggcaccgagtcttcgacttcttcagggccgcctgcagatccatccctacagtcatggacatctacaaccttcacgacgtcgtcgccccatctcacctccgctccgtcgtcgccgcggagatccgcaagcacgcctccgtcaccaaccccaagatgcattgttcctgctttgcatcaaaaagcttcattgtcaaagaatttaagcttggatctttgcgatcacaacctctcggtttctgtgacatttcgtttgttgggttctatggtggtagtggaggtcagacattgaggggggtattggatttggagtggctggcagactcgtcgctcctctcgattctcatcgcttcgcattcattttcctctgttgaaattgctctcaatcgattgcctggggtctgtaatcggagtcggataaaattagggtttgagattcgcttcggtttttttaaggcttcccaatttcagtcgctattgagggcgagacaacatgttgggaagaggattgatactctggagctgagcactatggaggatgttagtacttcttctcctccaaagagctcaaagagatggattacgaggaagaaaaccagaggtgaaaaggtcggtgatagagatgtaggtcatcaattgagatttctggcaggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Complex1_LYR

Protein Analysis

237

Amino Acids

26.43

Weight (kDa)

10.12

Isoelectric Point (pI)

53.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12260
fragaria_vesca	FvH4_7g03540
malus_domestica	MD02G1279300.v1.1 MD07G1047200.v1.1
prunus_persica	Prupe.2G041500_v2.0.a1
pyrus_communis	pycom02g23930 pycom07g03410
rosa_chinensis	RchiOBHm_Chr1g0325871 RchiOBHm_Chr1g0325941
rosa_laevigata	RLG00000030098
rosa_multiflora	Rmu_sc0008679.1_g000002 Rmu_sc0008679.1_g000022 Rmu_sc0013657.1_g000004
rosa_roxburghii	Rroxscaffold_4G00324220
rosa_rugosa	Rorug01G0055800
rosa_samantha	Rh1AG072000 Rh1BG058900 Rh1CG071400 Rh1DG076200 Rh1DG076400 Rh1DG076700 Rh1DG077000
rosa_wichuraiana	Rw1G005850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	141
Acc36I	ACCTGC	1 cut(s)	698
AccB1I	GGYRCC	2 cut(s)	28, 63
AccBSI	CCGCTC	1 cut(s)	162
AccII	CGCG	1 cut(s)	176
AccIII	TCCGGA	1 cut(s)	15
AciI	CCGC	5 cut(s)	90, 160, 174, 176, 184
AclWI	GGATC	3 cut(s)	93, 175, 277
AcsI	RAATTY	1 cut(s)	257
AcuI	CTGAAG	1 cut(s)	67
AcyI	GRCGYC	1 cut(s)	138
AfaI	GTAC	1 cut(s)	604
AflIII	ACRYGT	1 cut(s)	550
AgsI	TTSAA	1 cut(s)	431
AjnI	CCWGG	1 cut(s)	451
AjuI	GAANNNNNNNTTGG	2 cut(s)	249, 281
AluBI	AGCT	4 cut(s)	243, 265, 580, 624
AluI	AGCT	4 cut(s)	243, 265, 580, 624
Alw21I	GWGCWC	2 cut(s)	587, 626
Alw26I	GTCTC	2 cut(s)	49, 538
AlwI	GGATC	3 cut(s)	93, 175, 277
Aor13HI	TCCGGA	1 cut(s)	15
AoxI	GGCC	1 cut(s)	87
ApoI	RAATTY	1 cut(s)	257
ArsI	GACNNNNNNTTYG	2 cut(s)	293, 325
AspS9I	GGNCC	1 cut(s)	87
AsuC2I	CCSGG	1 cut(s)	61
AsuHPI	GGTGA	4 cut(s)	146, 193, 671, 683
BanI	GGYRCC	2 cut(s)	28, 63
BanII	GRGCYC	1 cut(s)	626
BbsI	GAAGAC	1 cut(s)	64
Bbv12I	GWGCWC	2 cut(s)	587, 626
BccI	CCATC	3 cut(s)	110, 157, 627
BcgI	CGANNNNNNTGC	2 cut(s)	366, 400
BciT130I	CCWGG	1 cut(s)	453
BcnI	CCSGG	1 cut(s)	61
BcoDI	GTCTC	2 cut(s)	49, 538
BfmI	CTRYAG	2 cut(s)	94, 108
BfuAI	ACCTGC	1 cut(s)	698
BisI	GCNGC	2 cut(s)	90, 174
BlpI	GCTNAGC	1 cut(s)	581
BlsI	GCNGC	2 cut(s)	91, 175
BmcAI	AGTACT	1 cut(s)	604
Bme1390I	CCNGG	2 cut(s)	61, 453
BmgT120I	GGNCC	1 cut(s)	87
BmiI	GGNNCC	2 cut(s)	30, 65
BmrFI	CCNGG	2 cut(s)	61, 453
BmsI	GCATC	2 cut(s)	204, 242
BpiI	GAAGAC	1 cut(s)	64
BpmI	CTGGAG	1 cut(s)	596
Bpu1102I	GCTNAGC	1 cut(s)	581
BpuMI	CCSGG	1 cut(s)	61
Bsa29I	ATCGAT	1 cut(s)	445
BsaBI	GATNNNNATC	1 cut(s)	401
BsaHI	GRCGYC	1 cut(s)	138
BsaI	GGTCTC	1 cut(s)	49
BsaJI	CCNNGG	2 cut(s)	174, 452
BsaWI	WCCGGW	1 cut(s)	15
BsaXI	ACNNNNNCTCC	4 cut(s)	146, 176, 595, 625
Bse8I	GATNNNNATC	1 cut(s)	401
BseAI	TCCGGA	1 cut(s)	15
BseBI	CCWGG	1 cut(s)	453
BseCI	ATCGAT	1 cut(s)	445
BseDI	CCNNGG	2 cut(s)	174, 452
BseGI	GGATG	2 cut(s)	102, 601
BseJI	GATNNNNATC	1 cut(s)	401
BseMII	CTCAG	1 cut(s)	572
BseRI	GAGGAG	2 cut(s)	380, 603
Bsh1236I	CGCG	1 cut(s)	176
BshFI	GGCC	1 cut(s)	89
BshNI	GGYRCC	2 cut(s)	28, 63
BshVI	ATCGAT	1 cut(s)	445
BsiHKAI	GWGCWC	2 cut(s)	587, 626
BsiSI	CCGG	2 cut(s)	16, 61
BsmAI	GTCTC	2 cut(s)	49, 538
BsmI	GAATGC	1 cut(s)	412
BsnI	GGCC	1 cut(s)	89
Bso31I	GGTCTC	1 cut(s)	49
Bsp1286I	GDGCHC	2 cut(s)	587, 626
Bsp13I	TCCGGA	1 cut(s)	15
Bsp143I	GATC	4 cut(s)	98, 180, 269, 278
Bsp1720I	GCTNAGC	1 cut(s)	581
BspACI	CCGC	5 cut(s)	90, 160, 174, 176, 184
BspANI	GGCC	1 cut(s)	89
BspCNI	CTCAG	1 cut(s)	573
BspDI	ATCGAT	1 cut(s)	445
BspEI	TCCGGA	1 cut(s)	15
BspFNI	CGCG	1 cut(s)	176
BspLI	GGNNCC	2 cut(s)	30, 65
BspMAI	CTGCAG	1 cut(s)	98
BspMI	ACCTGC	1 cut(s)	698
BspPI	GGATC	3 cut(s)	93, 175, 277
BspT107I	GGYRCC	2 cut(s)	28, 63
BspTNI	GGTCTC	1 cut(s)	49
BsrBI	CCGCTC	1 cut(s)	162
BssECI	CCNNGG	2 cut(s)	174, 452
BssMI	GATC	4 cut(s)	98, 180, 269, 278
BssNI	GRCGYC	1 cut(s)	138
Bst2UI	CCWGG	1 cut(s)	453
Bst4CI	ACNGT	1 cut(s)	112
Bst6I	CTCTTC	1 cut(s)	554
BstACI	GRCGYC	1 cut(s)	138
BstC8I	GCNNGC	4 cut(s)	94, 188, 192, 375
BstDEI	CTNAG	1 cut(s)	581
BstDSI	CCRYGG	1 cut(s)	174
BstF5I	GGATG	2 cut(s)	102, 601
BstFNI	CGCG	1 cut(s)	176
BstKTI	GATC	4 cut(s)	101, 183, 272, 281
BstMAI	GTCTC	2 cut(s)	49, 538
BstMBI	GATC	4 cut(s)	98, 180, 269, 278
BstNI	CCWGG	1 cut(s)	453
BstNSI	RCATGY	1 cut(s)	554
BstSCI	CCNGG	2 cut(s)	59, 451
BstSFI	CTRYAG	2 cut(s)	94, 108
BstUI	CGCG	1 cut(s)	176
BstV2I	GAAGAC	1 cut(s)	64
BstX2I	RGATCY	3 cut(s)	98, 180, 269
BstYI	RGATCY	3 cut(s)	98, 180, 269
Bsu15I	ATCGAT	1 cut(s)	445
BsuRI	GGCC	1 cut(s)	89
BsuTUI	ATCGAT	1 cut(s)	445
BtgI	CCRYGG	1 cut(s)	174
BtgZI	GCGATG	1 cut(s)	388
BtsCI	GGATG	2 cut(s)	102, 601
BveI	ACCTGC	1 cut(s)	698
Cac8I	GCNNGC	4 cut(s)	94, 188, 192, 375
Cfr13I	GGNCC	1 cut(s)	87
Cfr42I	CCGCGG	1 cut(s)	177
ClaI	ATCGAT	1 cut(s)	445
Csp6I	GTAC	1 cut(s)	603
CviAII	CATG	2 cut(s)	115, 551
CviJI	RGCY	8 cut(s)	59, 89, 243, 265, 373, 515, 580, 624
CviKI_1	RGCY	8 cut(s)	59, 89, 243, 265, 373, 515, 580, 624
CviQI	GTAC	1 cut(s)	603
DdeI	CTNAG	1 cut(s)	581
DpnI	GATC	4 cut(s)	100, 182, 271, 280
DpnII	GATC	4 cut(s)	98, 180, 269, 278
Eam1104I	CTCTTC	1 cut(s)	554
EarI	CTCTTC	1 cut(s)	554
Ecl136II	GAGCTC	1 cut(s)	624
Eco24I	GRGCYC	1 cut(s)	626
Eco31I	GGTCTC	1 cut(s)	49
Eco53kI	GAGCTC	1 cut(s)	624
Eco57I	CTGAAG	1 cut(s)	67
EcoICRI	GAGCTC	1 cut(s)	624
EcoRII	CCWGG	1 cut(s)	451
EcoT22I	ATGCAT	1 cut(s)	219
EcoT38I	GRGCYC	1 cut(s)	626
FaeI	CATG	2 cut(s)	118, 554
FaiI	YATR	4 cut(s)	116, 324, 552, 590
FatI	CATG	2 cut(s)	114, 550
Fnu4HI	GCNGC	2 cut(s)	90, 174
FokI	GGATG	2 cut(s)	89, 608
FriOI	GRGCYC	1 cut(s)	626
Fsp4HI	GCNGC	2 cut(s)	90, 174
GluI	GCNGC	2 cut(s)	90, 174
GsuI	CTGGAG	1 cut(s)	596
HaeIII	GGCC	1 cut(s)	89
HapII	CCGG	2 cut(s)	16, 61
Hin1I	GRCGYC	1 cut(s)	138
Hin1II	CATG	2 cut(s)	118, 554
HindIII	AAGCTT	2 cut(s)	241, 263
HinfI	GANTC	5 cut(s)	69, 380, 397, 469, 493
HpaII	CCGG	2 cut(s)	16, 61
HphI	GGTGA	4 cut(s)	146, 193, 671, 683
Hpy166II	GTNNAC	1 cut(s)	9
Hpy188I	TCNGA	3 cut(s)	342, 468, 474
Hpy188III	TCNNGA	5 cut(s)	16, 50, 134, 394, 575
Hpy8I	GTNNAC	1 cut(s)	9
Hpy99I	CGWCG	7 cut(s)	56, 140, 143, 146, 170, 173, 388
HpyAV	CCTTC	2 cut(s)	19, 140
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	3 cut(s)	96, 217, 233
HpyF3I	CTNAG	1 cut(s)	581
HpySE526I	ACGT	1 cut(s)	138
Hsp92I	GRCGYC	1 cut(s)	138
Hsp92II	CATG	2 cut(s)	118, 554
Kpn2I	TCCGGA	1 cut(s)	15
KspI	CCGCGG	1 cut(s)	177
Kzo9I	GATC	4 cut(s)	98, 180, 269, 278
LmnI	GCTCC	4 cut(s)	18, 167, 393, 577
LweI	GCATC	2 cut(s)	204, 242
MaeII	ACGT	1 cut(s)	138
MaeIII	GTNAC	2 cut(s)	199, 299
MalI	GATC	4 cut(s)	100, 182, 271, 280
MbiI	CCGCTC	1 cut(s)	162
MboI	GATC	4 cut(s)	98, 180, 269, 278
MboII	GAAGA	5 cut(s)	64, 73, 571, 600, 658
MfeI	CAATTG	1 cut(s)	692
MflI	RGATCY	3 cut(s)	98, 180, 269
MhlI	GDGCHC	2 cut(s)	587, 626
MluCI	AATT	5 cut(s)	257, 432, 479, 521, 692
MlyI	GAGTC	3 cut(s)	78, 374, 478
MmeI	TCCRAC	1 cut(s)	452
Mph1103I	ATGCAT	1 cut(s)	219
MroI	TCCGGA	1 cut(s)	15
MseI	TTAA	2 cut(s)	261, 510
MspA1I	CMGCKG	1 cut(s)	176
MspI	CCGG	2 cut(s)	16, 61
MspR9I	CCNGG	2 cut(s)	61, 453
MunI	CAATTG	1 cut(s)	692
Mva1269I	GAATGC	1 cut(s)	412
MvaI	CCWGG	1 cut(s)	453
MvnI	CGCG	1 cut(s)	176
NciI	CCSGG	1 cut(s)	61
NdeII	GATC	4 cut(s)	98, 180, 269, 278
NlaIII	CATG	2 cut(s)	118, 554
NlaIV	GGNNCC	2 cut(s)	30, 65
NmuCI	GTSAC	2 cut(s)	199, 299
NsiI	ATGCAT	1 cut(s)	219
NspI	RCATGY	1 cut(s)	554
PciI	ACATGT	1 cut(s)	550
PcsI	WCGNNNNNNNCGW	1 cut(s)	392
PctI	GAATGC	1 cut(s)	412
PfeI	GAWTC	2 cut(s)	397, 493
PflFI	GACNNNGTC	1 cut(s)	140
PkrI	GCNGC	2 cut(s)	91, 175
PleI	GAGTC	3 cut(s)	77, 374, 477
PpsI	GAGTC	3 cut(s)	77, 374, 477
PscI	ACATGT	1 cut(s)	550
Psp124BI	GAGCTC	1 cut(s)	626
Psp6I	CCWGG	1 cut(s)	451
PspGI	CCWGG	1 cut(s)	451
PspN4I	GGNNCC	2 cut(s)	30, 65
PspPI	GGNCC	1 cut(s)	87
PstI	CTGCAG	1 cut(s)	98
PsuI	RGATCY	3 cut(s)	98, 180, 269
PsyI	GACNNNGTC	1 cut(s)	140
RsaI	GTAC	1 cut(s)	604
RsaNI	GTAC	1 cut(s)	603
SacI	GAGCTC	1 cut(s)	626
SacII	CCGCGG	1 cut(s)	177
SaqAI	TTAA	2 cut(s)	261, 510
SatI	GCNGC	2 cut(s)	90, 174
Sau3AI	GATC	4 cut(s)	98, 180, 269, 278
Sau96I	GGNCC	1 cut(s)	87
ScaI	AGTACT	1 cut(s)	604
SchI	GAGTC	3 cut(s)	78, 374, 478
ScrFI	CCNGG	2 cut(s)	61, 453
SduI	GDGCHC	2 cut(s)	587, 626
SfaNI	GCATC	2 cut(s)	204, 242
SfcI	CTRYAG	2 cut(s)	94, 108
Sfr303I	CCGCGG	1 cut(s)	177
SgrBI	CCGCGG	1 cut(s)	177
Sse9I	AATT	5 cut(s)	257, 432, 479, 521, 692
SsiI	CCGC	5 cut(s)	90, 160, 174, 176, 184
SstI	GAGCTC	1 cut(s)	626
StyD4I	CCNGG	2 cut(s)	59, 451
TaaI	ACNGT	1 cut(s)	112
TaiI	ACGT	1 cut(s)	141
TaqI	TCGA	4 cut(s)	51, 75, 395, 445
TaqII	GACCGA	1 cut(s)	31
TasI	AATT	5 cut(s)	257, 432, 479, 521, 692
TatI	WGTACW	1 cut(s)	602
TauI	GCSGC	2 cut(s)	92, 176
TfiI	GAWTC	2 cut(s)	397, 493
Tru1I	TTAA	2 cut(s)	261, 510
Tru9I	TTAA	2 cut(s)	261, 510
TseFI	GTSAC	2 cut(s)	199, 299
Tsp45I	GTSAC	2 cut(s)	199, 299
TspDTI	ATGAA	2 cut(s)	235, 405
TspGWI	ACGGA	2 cut(s)	154, 187
Tth111I	GACNNNGTC	1 cut(s)	140
XapI	RAATTY	1 cut(s)	257
XceI	RCATGY	1 cut(s)	554
ZraI	GACGTC	1 cut(s)	139
ZrmI	AGTACT	1 cut(s)	604
Zsp2I	ATGCAT	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.