Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0008503

Physical Location & Seq

Genomic Coordinates Forward (+)

33563335 .. 33565650

Gene Structure 2316 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1279300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGCCATCAGGGCGAGTAGAGTGGAGCGACGCAGAAGAACTCAGTGAGTCGAGTTTTGAGTTTTCGGAGGAAGAAATGTCGTTTATTCAGCGGGCTGTGAAGGTGCCACCGAACTCGGCGTCTCTGGACGAAGCCCGGCACCGAGTCTTCGACTTCTTCAGGGCCGCCTGCAGATCCATCCCCACCATCATGGAAATCTACAACCTCGACGACGTCGTTACGCCCTCTCACCTCCGCACCGTCGTCGCCTCCGAGATCCGCAAGAACGCCAACGTCACTAACCCTAAGGTCATCGATATGCTGCTCTTCAAGGCAATGGAAGAGTTAAATAACATCACCGAGCATGCAAAGCAGCGACACCACATCATTGGCCAGTACGTCGTTGGTCAGCAAGGGCTTCTGCAGGATTCGGGCACGAAAGATCAGGGGACCTCTGCTTTTCTTAAAGAATTTTATAAGAGCAATTATTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Complex1_LYR

Protein Analysis

158

Amino Acids

17.93

Weight (kDa)

5.37

Isoelectric Point (pI)

54.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12260
fragaria_vesca	FvH4_7g03540
malus_domestica	MD02G1279300.v1.1 MD07G1047200.v1.1
prunus_persica	Prupe.2G041500_v2.0.a1
pyrus_communis	pycom02g23930 pycom07g03410
rosa_chinensis	RchiOBHm_Chr1g0325871 RchiOBHm_Chr1g0325941
rosa_laevigata	RLG00000030098
rosa_multiflora	Rmu_sc0008679.1_g000002 Rmu_sc0008679.1_g000022 Rmu_sc0013657.1_g000004
rosa_roxburghii	Rroxscaffold_4G00324220
rosa_rugosa	Rorug01G0055800
rosa_samantha	Rh1AG072000 Rh1BG058900 Rh1CG071400 Rh1DG076200 Rh1DG076400 Rh1DG076700 Rh1DG077000
rosa_wichuraiana	Rw1G005850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	456
AatII	GACGTC	1 cut(s)	216
AccB1I	GGYRCC	2 cut(s)	103, 138
AciI	CCGC	4 cut(s)	91, 165, 235, 259
AclWI	GGATC	2 cut(s)	168, 250
AcoI	YGGCCR	1 cut(s)	370
AcsI	RAATTY	1 cut(s)	449
AcuI	CTGAAG	1 cut(s)	142
AcyI	GRCGYC	2 cut(s)	119, 213
AfaI	GTAC	1 cut(s)	377
AgsI	TTSAA	1 cut(s)	310
Alw26I	GTCTC	1 cut(s)	126
AlwI	GGATC	2 cut(s)	168, 250
AoxI	GGCC	2 cut(s)	162, 370
ApeKI	GCWGC	2 cut(s)	301, 352
ApoI	RAATTY	1 cut(s)	449
ArsI	GACNNNNNNTTYG	2 cut(s)	104, 136
AspS9I	GGNCC	2 cut(s)	162, 429
AsuC2I	CCSGG	1 cut(s)	136
AsuHPI	GGTGA	2 cut(s)	221, 328
AvaII	GGWCC	1 cut(s)	429
AxyI	CCTNAGG	1 cut(s)	285
BaeGI	GKGCMC	1 cut(s)	416
BalI	TGGCCA	1 cut(s)	372
BanI	GGYRCC	2 cut(s)	103, 138
BbsI	GAAGAC	1 cut(s)	139
BbvI	GCAGC	2 cut(s)	288, 364
BccI	CCATC	3 cut(s)	13, 185, 194
BcgI	CGANNNNNNTGC	2 cut(s)	226, 260
BcnI	CCSGG	1 cut(s)	136
BcoDI	GTCTC	1 cut(s)	126
BfmI	CTRYAG	2 cut(s)	169, 401
BglI	GCCNNNNNGGC	1 cut(s)	10
BisI	GCNGC	3 cut(s)	165, 302, 353
BlsI	GCNGC	3 cut(s)	166, 303, 354
Bme1390I	CCNGG	1 cut(s)	136
Bme18I	GGWCC	1 cut(s)	429
BmgT120I	GGNCC	2 cut(s)	162, 429
BmiI	GGNNCC	3 cut(s)	105, 140, 430
BmrFI	CCNGG	1 cut(s)	136
BpiI	GAAGAC	1 cut(s)	139
BpuMI	CCSGG	1 cut(s)	136
Bsa29I	ATCGAT	1 cut(s)	294
BsaHI	GRCGYC	2 cut(s)	119, 213
Bse1I	ACTGG	1 cut(s)	373
Bse21I	CCTNAGG	1 cut(s)	285
Bse3DI	GCAATG	1 cut(s)	321
BseCI	ATCGAT	1 cut(s)	294
BseGI	GGATG	1 cut(s)	177
BseMI	GCAATG	1 cut(s)	321
BseMII	CTCAG	1 cut(s)	55
BseNI	ACTGG	1 cut(s)	373
BseSI	GKGCMC	1 cut(s)	416
BseXI	GCAGC	2 cut(s)	288, 364
BshFI	GGCC	2 cut(s)	164, 372
BshNI	GGYRCC	2 cut(s)	103, 138
BshVI	ATCGAT	1 cut(s)	294
BsiSI	CCGG	1 cut(s)	136
BslFI	GGGAC	1 cut(s)	442
BsmAI	GTCTC	1 cut(s)	126
BsmBI	CGTCTC	1 cut(s)	126
BsmFI	GGGAC	1 cut(s)	442
BsnI	GGCC	2 cut(s)	164, 372
Bsp1286I	GDGCHC	1 cut(s)	416
Bsp143I	GATC	3 cut(s)	173, 255, 421
BspACI	CCGC	4 cut(s)	91, 165, 235, 259
BspANI	GGCC	2 cut(s)	164, 372
BspCNI	CTCAG	1 cut(s)	54
BspDI	ATCGAT	1 cut(s)	294
BspLI	GGNNCC	3 cut(s)	105, 140, 430
BspMAI	CTGCAG	2 cut(s)	173, 405
BspPI	GGATC	2 cut(s)	168, 250
BspQI	GCTCTTC	1 cut(s)	311
BspT107I	GGYRCC	2 cut(s)	103, 138
BsrDI	GCAATG	1 cut(s)	321
BsrI	ACTGG	1 cut(s)	373
BssMI	GATC	3 cut(s)	173, 255, 421
BssNI	GRCGYC	2 cut(s)	119, 213
Bst4CI	ACNGT	1 cut(s)	241
Bst6I	CTCTTC	2 cut(s)	311, 315
BstACI	GRCGYC	2 cut(s)	119, 213
BstC8I	GCNNGC	3 cut(s)	93, 169, 345
BstDEI	CTNAG	2 cut(s)	41, 285
BstF5I	GGATG	1 cut(s)	177
BstKTI	GATC	3 cut(s)	176, 258, 424
BstMAI	GTCTC	1 cut(s)	126
BstMBI	GATC	3 cut(s)	173, 255, 421
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 349
BstNSI	RCATGY	1 cut(s)	347
BstSCI	CCNGG	1 cut(s)	134
BstSFI	CTRYAG	2 cut(s)	169, 401
BstSLI	GKGCMC	1 cut(s)	416
BstV1I	GCAGC	2 cut(s)	288, 364
BstV2I	GAAGAC	1 cut(s)	139
BstX2I	RGATCY	2 cut(s)	173, 255
BstXI	CCANNNNNNTGG	2 cut(s)	190, 368
BstYI	RGATCY	2 cut(s)	173, 255
Bsu15I	ATCGAT	1 cut(s)	294
Bsu36I	CCTNAGG	1 cut(s)	285
BsuRI	GGCC	2 cut(s)	164, 372
BsuTUI	ATCGAT	1 cut(s)	294
BtsCI	GGATG	1 cut(s)	177
BtsIMutI	CAGTG	1 cut(s)	49
Cac8I	GCNNGC	3 cut(s)	93, 169, 345
Cfr13I	GGNCC	2 cut(s)	162, 429
ClaI	ATCGAT	1 cut(s)	294
CseI	GACGC	2 cut(s)	38, 108
Csp6I	GTAC	1 cut(s)	376
CviAII	CATG	2 cut(s)	190, 344
CviJI	RGCY	5 cut(s)	95, 134, 164, 372, 397
CviKI_1	RGCY	5 cut(s)	95, 134, 164, 372, 397
CviQI	GTAC	1 cut(s)	376
DdeI	CTNAG	2 cut(s)	41, 285
DpnI	GATC	3 cut(s)	175, 257, 423
DpnII	GATC	3 cut(s)	173, 255, 421
EaeI	YGGCCR	1 cut(s)	370
Eam1104I	CTCTTC	2 cut(s)	311, 315
EarI	CTCTTC	2 cut(s)	311, 315
Eco47I	GGWCC	1 cut(s)	429
Eco57I	CTGAAG	1 cut(s)	142
Eco81I	CCTNAGG	1 cut(s)	285
EcoO109I	RGGNCCY	1 cut(s)	429
Esp3I	CGTCTC	1 cut(s)	126
FaeI	CATG	2 cut(s)	193, 347
FaiI	YATR	4 cut(s)	191, 299, 345, 456
FaqI	GGGAC	1 cut(s)	442
FatI	CATG	2 cut(s)	189, 343
FauI	CCCGC	1 cut(s)	84
Fnu4HI	GCNGC	3 cut(s)	165, 302, 353
FokI	GGATG	1 cut(s)	164
Fsp4HI	GCNGC	3 cut(s)	165, 302, 353
GluI	GCNGC	3 cut(s)	165, 302, 353
HaeIII	GGCC	2 cut(s)	164, 372
HapII	CCGG	1 cut(s)	136
HgaI	GACGC	2 cut(s)	38, 108
Hin1I	GRCGYC	2 cut(s)	119, 213
Hin1II	CATG	2 cut(s)	193, 347
HinfI	GANTC	3 cut(s)	47, 144, 407
HpaII	CCGG	1 cut(s)	136
HphI	GGTGA	2 cut(s)	221, 328
Hpy188I	TCNGA	2 cut(s)	67, 253
Hpy188III	TCNNGA	1 cut(s)	125
Hpy99I	CGWCG	7 cut(s)	32, 212, 215, 218, 245, 248, 383
HpyAV	CCTTC	1 cut(s)	94
HpyCH4III	ACNGT	1 cut(s)	241
HpyCH4IV	ACGT	3 cut(s)	213, 273, 378
HpyCH4V	TGCA	3 cut(s)	171, 347, 403
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 349
HpyF3I	CTNAG	2 cut(s)	41, 285
HpySE526I	ACGT	3 cut(s)	213, 273, 378
Hsp92I	GRCGYC	2 cut(s)	119, 213
Hsp92II	CATG	2 cut(s)	193, 347
Kzo9I	GATC	3 cut(s)	173, 255, 421
LguI	GCTCTTC	1 cut(s)	311
LmnI	GCTCC	1 cut(s)	24
LpnPI	CCDG	7 cut(s)	110, 145, 149, 181, 386, 389, 410
Lsp1109I	GCAGC	2 cut(s)	288, 364
MaeII	ACGT	3 cut(s)	213, 273, 378
MaeIII	GTNAC	2 cut(s)	217, 274
MalI	GATC	3 cut(s)	175, 257, 423
MboI	GATC	3 cut(s)	173, 255, 421
MboII	GAAGA	6 cut(s)	47, 83, 139, 148, 298, 332
MflI	RGATCY	2 cut(s)	173, 255
MhlI	GDGCHC	1 cut(s)	416
MlsI	TGGCCA	1 cut(s)	372
MluCI	AATT	2 cut(s)	449, 463
MluNI	TGGCCA	1 cut(s)	372
MlyI	GAGTC	2 cut(s)	56, 153
MnlI	CCTC	6 cut(s)	61, 215, 235, 242, 259, 442
Mox20I	TGGCCA	1 cut(s)	372
MscI	TGGCCA	1 cut(s)	372
MseI	TTAA	2 cut(s)	326, 444
MslI	CAYNNNNRTG	2 cut(s)	188, 296
Msp20I	TGGCCA	1 cut(s)	372
MspA1I	CMGCKG	1 cut(s)	91
MspI	CCGG	1 cut(s)	136
MspR9I	CCNGG	1 cut(s)	136
MwoI	GCNNNNNNNGC	2 cut(s)	10, 349
NciI	CCSGG	1 cut(s)	136
NdeII	GATC	3 cut(s)	173, 255, 421
NlaIII	CATG	2 cut(s)	193, 347
NlaIV	GGNNCC	3 cut(s)	105, 140, 430
NmeAIII	GCCGAG	1 cut(s)	95
NmuCI	GTSAC	1 cut(s)	274
NspI	RCATGY	1 cut(s)	347
PaeI	GCATGC	1 cut(s)	347
PciSI	GCTCTTC	1 cut(s)	311
PcsI	WCGNNNNNNNCGW	2 cut(s)	213, 249
PfeI	GAWTC	1 cut(s)	407
PflFI	GACNNNGTC	1 cut(s)	212
PkrI	GCNGC	3 cut(s)	166, 303, 354
PleI	GAGTC	2 cut(s)	55, 152
PpsI	GAGTC	2 cut(s)	55, 152
PpuMI	RGGWCCY	1 cut(s)	429
PsiI	TTATAA	1 cut(s)	456
Psp5II	RGGWCCY	1 cut(s)	429
PspN4I	GGNNCC	3 cut(s)	105, 140, 430
PspPI	GGNCC	2 cut(s)	162, 429
PspPPI	RGGWCCY	1 cut(s)	429
PstI	CTGCAG	2 cut(s)	173, 405
PsuI	RGATCY	2 cut(s)	173, 255
PsyI	GACNNNGTC	1 cut(s)	212
RsaI	GTAC	1 cut(s)	377
RsaNI	GTAC	1 cut(s)	376
RseI	CAYNNNNRTG	2 cut(s)	188, 296
SapI	GCTCTTC	1 cut(s)	311
SaqAI	TTAA	2 cut(s)	326, 444
SatI	GCNGC	3 cut(s)	165, 302, 353
Sau3AI	GATC	3 cut(s)	173, 255, 421
Sau96I	GGNCC	2 cut(s)	162, 429
SchI	GAGTC	2 cut(s)	56, 153
ScrFI	CCNGG	1 cut(s)	136
SduI	GDGCHC	1 cut(s)	416
SetI	ASST	8 cut(s)	105, 207, 216, 234, 276, 291, 381, 434
SfcI	CTRYAG	2 cut(s)	169, 401
SinI	GGWCC	1 cut(s)	429
SmiMI	CAYNNNNRTG	2 cut(s)	188, 296
SphI	GCATGC	1 cut(s)	347
Sse9I	AATT	2 cut(s)	449, 463
SsiI	CCGC	4 cut(s)	91, 165, 235, 259
StyD4I	CCNGG	1 cut(s)	134
TaaI	ACNGT	1 cut(s)	241
TaiI	ACGT	3 cut(s)	216, 276, 381
TaqI	TCGA	4 cut(s)	50, 150, 207, 294
TasI	AATT	2 cut(s)	449, 463
TauI	GCSGC	1 cut(s)	167
TfiI	GAWTC	1 cut(s)	407
Tru1I	TTAA	2 cut(s)	326, 444
Tru9I	TTAA	2 cut(s)	326, 444
TscAI	CASTG	1 cut(s)	49
TseFI	GTSAC	1 cut(s)	274
TseI	GCWGC	2 cut(s)	301, 352
Tsp45I	GTSAC	1 cut(s)	274
TspRI	CASTG	1 cut(s)	49
Tth111I	GACNNNGTC	1 cut(s)	212
VpaK11BI	GGWCC	1 cut(s)	429
XapI	RAATTY	1 cut(s)	449
XceI	RCATGY	1 cut(s)	347
XcmI	CCANNNNNNNNNTGG	1 cut(s)	380
ZraI	GACGTC	1 cut(s)	214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.