Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0008503

Physical Location & Seq

Genomic Coordinates Forward (+)

55494911 .. 55497355

Gene Structure 2445 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00324220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGTCGTTCACACTCCGGAGCGTGAAGGTGCCACCGAACTCCGTCTCTCTCGACGAAGCCCGGCACCGAGTCTTCGACTTCTTCAGGGCCGCCTGCAGATCCATCCCTACAGTCATGGACATCTACAACCTTAACGACGTCGTCGCCCCATCTCACCTCCGCTCCGTCGTCGCCGCCGAGATCCGCAAGCACGCCTCCGTCACCAACCCCAAGGTCATTGATATGCTGCTCTTCAAGGCAATGGAAGAGTTAAATAACATCACTGAGCATGCAAAGCAACGACACCACATCATTGGCCAGTATGTTGTGGGTCGCGAAGGACTCATGCAGGATACAGGCGCAAAGGACCAGGGGGCCTCTAATTTTCTCAAAGAGTTCTACAAGACCAATTATTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Complex1_LYR

Protein Analysis

132

Amino Acids

15.04

Weight (kDa)

9.13

Isoelectric Point (pI)

43.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12260
fragaria_vesca	FvH4_7g03540
malus_domestica	MD02G1279300.v1.1 MD07G1047200.v1.1
prunus_persica	Prupe.2G041500_v2.0.a1
pyrus_communis	pycom02g23930 pycom07g03410
rosa_chinensis	RchiOBHm_Chr1g0325871 RchiOBHm_Chr1g0325941
rosa_laevigata	RLG00000030098
rosa_multiflora	Rmu_sc0008679.1_g000002 Rmu_sc0008679.1_g000022 Rmu_sc0013657.1_g000004
rosa_roxburghii	Rroxscaffold_4G00324220
rosa_rugosa	Rorug01G0055800
rosa_samantha	Rh1AG072000 Rh1BG058900 Rh1CG071400 Rh1DG076200 Rh1DG076400 Rh1DG076700 Rh1DG077000
rosa_wichuraiana	Rw1G005850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	141
AccB1I	GGYRCC	2 cut(s)	28, 63
AccBSI	CCGCTC	1 cut(s)	162
AccII	CGCG	1 cut(s)	315
AccIII	TCCGGA	1 cut(s)	15
AciI	CCGC	4 cut(s)	90, 160, 174, 184
AclWI	GGATC	2 cut(s)	93, 175
AcoI	YGGCCR	1 cut(s)	295
AcuI	CTGAAG	1 cut(s)	67
AcyI	GRCGYC	1 cut(s)	138
AgsI	TTSAA	1 cut(s)	235
AjnI	CCWGG	1 cut(s)	348
Alw26I	GTCTC	1 cut(s)	49
AlwI	GGATC	2 cut(s)	93, 175
Aor13HI	TCCGGA	1 cut(s)	15
AoxI	GGCC	3 cut(s)	87, 295, 354
ApeKI	GCWGC	1 cut(s)	226
AspLEI	GCGC	1 cut(s)	341
AspS9I	GGNCC	3 cut(s)	87, 346, 354
AsuC2I	CCSGG	1 cut(s)	61
AsuHPI	GGTGA	2 cut(s)	146, 193
AvaII	GGWCC	1 cut(s)	346
BalI	TGGCCA	1 cut(s)	297
BanI	GGYRCC	2 cut(s)	28, 63
BbsI	GAAGAC	1 cut(s)	64
BbvI	GCAGC	1 cut(s)	213
BccI	CCATC	2 cut(s)	110, 157
BciT130I	CCWGG	1 cut(s)	350
BciVI	GTATCC	1 cut(s)	325
BcnI	CCSGG	1 cut(s)	61
BcoDI	GTCTC	1 cut(s)	49
BfmI	CTRYAG	2 cut(s)	94, 108
BfuI	GTATCC	1 cut(s)	325
BisI	GCNGC	3 cut(s)	90, 174, 227
BlsI	GCNGC	3 cut(s)	91, 175, 228
Bme1390I	CCNGG	2 cut(s)	61, 350
Bme18I	GGWCC	1 cut(s)	346
BmgT120I	GGNCC	3 cut(s)	87, 346, 354
BmiI	GGNNCC	3 cut(s)	30, 65, 355
BmrFI	CCNGG	2 cut(s)	61, 350
BpiI	GAAGAC	1 cut(s)	64
BpuMI	CCSGG	1 cut(s)	61
BsaHI	GRCGYC	1 cut(s)	138
BsaJI	CCNNGG	2 cut(s)	210, 349
BsaWI	WCCGGW	1 cut(s)	15
BsaXI	ACNNNNNCTCC	2 cut(s)	146, 176
Bse1I	ACTGG	1 cut(s)	298
Bse3DI	GCAATG	1 cut(s)	246
BseAI	TCCGGA	1 cut(s)	15
BseBI	CCWGG	1 cut(s)	350
BseDI	CCNNGG	2 cut(s)	210, 349
BseGI	GGATG	1 cut(s)	102
BseMI	GCAATG	1 cut(s)	246
BseMII	CTCAG	1 cut(s)	255
BseNI	ACTGG	1 cut(s)	298
BseXI	GCAGC	1 cut(s)	213
Bsh1236I	CGCG	1 cut(s)	315
BshFI	GGCC	3 cut(s)	89, 297, 356
BshNI	GGYRCC	2 cut(s)	28, 63
BsiSI	CCGG	2 cut(s)	16, 61
BsmAI	GTCTC	1 cut(s)	49
BsmBI	CGTCTC	1 cut(s)	49
BsnI	GGCC	3 cut(s)	89, 297, 356
Bsp13I	TCCGGA	1 cut(s)	15
Bsp143I	GATC	2 cut(s)	98, 180
Bsp68I	TCGCGA	1 cut(s)	315
BspACI	CCGC	4 cut(s)	90, 160, 174, 184
BspANI	GGCC	3 cut(s)	89, 297, 356
BspCNI	CTCAG	1 cut(s)	256
BspEI	TCCGGA	1 cut(s)	15
BspFNI	CGCG	1 cut(s)	315
BspLI	GGNNCC	3 cut(s)	30, 65, 355
BspMAI	CTGCAG	1 cut(s)	98
BspPI	GGATC	2 cut(s)	93, 175
BspQI	GCTCTTC	1 cut(s)	236
BspT107I	GGYRCC	2 cut(s)	28, 63
BsrBI	CCGCTC	1 cut(s)	162
BsrDI	GCAATG	1 cut(s)	246
BsrI	ACTGG	1 cut(s)	298
BssECI	CCNNGG	2 cut(s)	210, 349
BssMI	GATC	2 cut(s)	98, 180
BssNI	GRCGYC	1 cut(s)	138
BssT1I	CCWWGG	1 cut(s)	210
Bst2UI	CCWGG	1 cut(s)	350
Bst4CI	ACNGT	1 cut(s)	112
Bst6I	CTCTTC	2 cut(s)	236, 240
BstACI	GRCGYC	1 cut(s)	138
BstC8I	GCNNGC	4 cut(s)	94, 188, 192, 270
BstDEI	CTNAG	1 cut(s)	264
BstF5I	GGATG	1 cut(s)	102
BstFNI	CGCG	1 cut(s)	315
BstHHI	GCGC	1 cut(s)	341
BstKTI	GATC	2 cut(s)	101, 183
BstMAI	GTCTC	1 cut(s)	49
BstMBI	GATC	2 cut(s)	98, 180
BstMWI	GCNNNNNNNGC	1 cut(s)	274
BstNI	CCWGG	1 cut(s)	350
BstNSI	RCATGY	1 cut(s)	272
BstSCI	CCNGG	2 cut(s)	59, 348
BstSFI	CTRYAG	2 cut(s)	94, 108
BstUI	CGCG	1 cut(s)	315
BstV1I	GCAGC	1 cut(s)	213
BstV2I	GAAGAC	1 cut(s)	64
BstX2I	RGATCY	2 cut(s)	98, 180
BstXI	CCANNNNNNTGG	1 cut(s)	293
BstYI	RGATCY	2 cut(s)	98, 180
BsuI	GTATCC	1 cut(s)	325
BsuRI	GGCC	3 cut(s)	89, 297, 356
BtsCI	GGATG	1 cut(s)	102
BtsIMutI	CAGTG	1 cut(s)	261
BtuMI	TCGCGA	1 cut(s)	315
Cac8I	GCNNGC	4 cut(s)	94, 188, 192, 270
CfoI	GCGC	1 cut(s)	341
Cfr13I	GGNCC	3 cut(s)	87, 346, 354
CviAII	CATG	3 cut(s)	115, 269, 325
CviJI	RGCY	4 cut(s)	59, 89, 297, 356
CviKI_1	RGCY	4 cut(s)	59, 89, 297, 356
DdeI	CTNAG	1 cut(s)	264
DpnI	GATC	2 cut(s)	100, 182
DpnII	GATC	2 cut(s)	98, 180
EaeI	YGGCCR	1 cut(s)	295
Eam1104I	CTCTTC	2 cut(s)	236, 240
EarI	CTCTTC	2 cut(s)	236, 240
Eco130I	CCWWGG	1 cut(s)	210
Eco47I	GGWCC	1 cut(s)	346
Eco57I	CTGAAG	1 cut(s)	67
EcoO109I	RGGNCCY	1 cut(s)	354
EcoRII	CCWGG	1 cut(s)	348
EcoT14I	CCWWGG	1 cut(s)	210
ErhI	CCWWGG	1 cut(s)	210
Esp3I	CGTCTC	1 cut(s)	49
FaeI	CATG	3 cut(s)	118, 272, 328
FaiI	YATR	5 cut(s)	116, 224, 270, 303, 326
FatI	CATG	3 cut(s)	114, 268, 324
Fnu4HI	GCNGC	3 cut(s)	90, 174, 227
FokI	GGATG	1 cut(s)	89
Fsp4HI	GCNGC	3 cut(s)	90, 174, 227
GlaI	GCGC	1 cut(s)	340
GluI	GCNGC	3 cut(s)	90, 174, 227
HaeIII	GGCC	3 cut(s)	89, 297, 356
HapII	CCGG	2 cut(s)	16, 61
HhaI	GCGC	1 cut(s)	341
Hin1I	GRCGYC	1 cut(s)	138
Hin1II	CATG	3 cut(s)	118, 272, 328
Hin6I	GCGC	1 cut(s)	339
HinP1I	GCGC	1 cut(s)	339
HinfI	GANTC	2 cut(s)	69, 321
HpaII	CCGG	2 cut(s)	16, 61
HphI	GGTGA	2 cut(s)	146, 193
Hpy166II	GTNNAC	1 cut(s)	9
Hpy188III	TCNNGA	3 cut(s)	16, 50, 314
Hpy8I	GTNNAC	1 cut(s)	9
Hpy99I	CGWCG	6 cut(s)	56, 140, 143, 146, 170, 173
HpyAV	CCTTC	2 cut(s)	19, 311
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	3 cut(s)	96, 272, 328
HpyF10VI	GCNNNNNNNGC	1 cut(s)	274
HpyF3I	CTNAG	1 cut(s)	264
HpySE526I	ACGT	1 cut(s)	138
Hsp92I	GRCGYC	1 cut(s)	138
Hsp92II	CATG	3 cut(s)	118, 272, 328
HspAI	GCGC	1 cut(s)	339
Kpn2I	TCCGGA	1 cut(s)	15
Kzo9I	GATC	2 cut(s)	98, 180
LguI	GCTCTTC	1 cut(s)	236
LmnI	GCTCC	2 cut(s)	18, 167
LpnPI	CCDG	9 cut(s)	29, 70, 74, 106, 311, 314, 321, 335, 362
Lsp1109I	GCAGC	1 cut(s)	213
MaeII	ACGT	1 cut(s)	138
MaeIII	GTNAC	1 cut(s)	199
MalI	GATC	2 cut(s)	100, 182
MbiI	CCGCTC	1 cut(s)	162
MboI	GATC	2 cut(s)	98, 180
MboII	GAAGA	4 cut(s)	64, 73, 223, 257
MflI	RGATCY	2 cut(s)	98, 180
MlsI	TGGCCA	1 cut(s)	297
MluCI	AATT	2 cut(s)	361, 388
MluNI	TGGCCA	1 cut(s)	297
MlyI	GAGTC	2 cut(s)	78, 315
MnlI	CCTC	3 cut(s)	167, 205, 367
Mox20I	TGGCCA	1 cut(s)	297
MroI	TCCGGA	1 cut(s)	15
MscI	TGGCCA	1 cut(s)	297
MseI	TTAA	2 cut(s)	132, 251
MslI	CAYNNNNRTG	1 cut(s)	221
Msp20I	TGGCCA	1 cut(s)	297
MspI	CCGG	2 cut(s)	16, 61
MspR9I	CCNGG	2 cut(s)	61, 350
MvaI	CCWGG	1 cut(s)	350
MvnI	CGCG	1 cut(s)	315
MwoI	GCNNNNNNNGC	1 cut(s)	274
NciI	CCSGG	1 cut(s)	61
NdeII	GATC	2 cut(s)	98, 180
NlaIII	CATG	3 cut(s)	118, 272, 328
NlaIV	GGNNCC	3 cut(s)	30, 65, 355
NmeAIII	GCCGAG	1 cut(s)	202
NmuCI	GTSAC	1 cut(s)	199
NruI	TCGCGA	1 cut(s)	315
NspI	RCATGY	1 cut(s)	272
PaeI	GCATGC	1 cut(s)	272
PciSI	GCTCTTC	1 cut(s)	236
PcsI	WCGNNNNNNNCGW	1 cut(s)	174
PflFI	GACNNNGTC	1 cut(s)	140
PkrI	GCNGC	3 cut(s)	91, 175, 228
PleI	GAGTC	2 cut(s)	77, 315
PpsI	GAGTC	2 cut(s)	77, 315
Psp6I	CCWGG	1 cut(s)	348
PspGI	CCWGG	1 cut(s)	348
PspN4I	GGNNCC	3 cut(s)	30, 65, 355
PspPI	GGNCC	3 cut(s)	87, 346, 354
PstI	CTGCAG	1 cut(s)	98
PsuI	RGATCY	2 cut(s)	98, 180
PsyI	GACNNNGTC	1 cut(s)	140
RruI	TCGCGA	1 cut(s)	315
RseI	CAYNNNNRTG	1 cut(s)	221
SapI	GCTCTTC	1 cut(s)	236
SaqAI	TTAA	2 cut(s)	132, 251
SatI	GCNGC	3 cut(s)	90, 174, 227
Sau3AI	GATC	2 cut(s)	98, 180
Sau96I	GGNCC	3 cut(s)	87, 346, 354
SchI	GAGTC	2 cut(s)	78, 315
ScrFI	CCNGG	2 cut(s)	61, 350
SetI	ASST	5 cut(s)	30, 132, 141, 159, 216
SfcI	CTRYAG	2 cut(s)	94, 108
SinI	GGWCC	1 cut(s)	346
SmiMI	CAYNNNNRTG	1 cut(s)	221
SphI	GCATGC	1 cut(s)	272
Sse9I	AATT	2 cut(s)	361, 388
SsiI	CCGC	4 cut(s)	90, 160, 174, 184
StyD4I	CCNGG	2 cut(s)	59, 348
StyI	CCWWGG	1 cut(s)	210
TaaI	ACNGT	1 cut(s)	112
TaiI	ACGT	1 cut(s)	141
TaqI	TCGA	2 cut(s)	51, 75
TasI	AATT	2 cut(s)	361, 388
TauI	GCSGC	2 cut(s)	92, 176
Tru1I	TTAA	2 cut(s)	132, 251
Tru9I	TTAA	2 cut(s)	132, 251
TscAI	CASTG	1 cut(s)	268
TseFI	GTSAC	1 cut(s)	199
TseI	GCWGC	1 cut(s)	226
Tsp45I	GTSAC	1 cut(s)	199
TspGWI	ACGGA	3 cut(s)	31, 154, 187
TspRI	CASTG	1 cut(s)	268
Tth111I	GACNNNGTC	1 cut(s)	140
VpaK11BI	GGWCC	1 cut(s)	346
XceI	RCATGY	1 cut(s)	272
ZraI	GACGTC	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.