Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0008503

Physical Location & Seq

Genomic Coordinates Reverse (-)

3932201 .. 3934731

Gene Structure 2531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g03540.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGTCGTTCACACTGCGGAGCGTGAAGGTCCCACCGAACTCGGTCTCCCTCGATGAAGCGAGACACCGAGTGTTCGATTTCTTCAGGGCCGCCTGTAGATCCATCCCTACAATCATGGACATCTACAACCTCCAAGACGTCGTCGCCCCTTCTCACCTCCGCTCCGTCGTCGCCGCCGAGATCCGCAAGCACGCCTCCGTCACCAACCCCAAGGTCATTGATATGCTGCTCTTCAAGGCAATGGAAGAGTTGAATAACATCACTGAGCATGCAAAGCAGCGACACCACATCATTGGCCAGTATGTTGTGGGTAGCGAAGGACTCATGCAAGATACAGGGATGAAGGACCAGGGTGCCTCGAATTTTCTCAAAGATTTCTACAAGACCAATTATTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Complex1_LYR

Protein Analysis

133

Amino Acids

15.04

Weight (kDa)

8.76

Isoelectric Point (pI)

48.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12260
fragaria_vesca	FvH4_7g03540
malus_domestica	MD02G1279300.v1.1 MD07G1047200.v1.1
prunus_persica	Prupe.2G041500_v2.0.a1
pyrus_communis	pycom02g23930 pycom07g03410
rosa_chinensis	RchiOBHm_Chr1g0325871 RchiOBHm_Chr1g0325941
rosa_laevigata	RLG00000030098
rosa_multiflora	Rmu_sc0008679.1_g000002 Rmu_sc0008679.1_g000022 Rmu_sc0013657.1_g000004
rosa_roxburghii	Rroxscaffold_4G00324220
rosa_rugosa	Rorug01G0055800
rosa_samantha	Rh1AG072000 Rh1BG058900 Rh1CG071400 Rh1DG076200 Rh1DG076400 Rh1DG076700 Rh1DG077000
rosa_wichuraiana	Rw1G005850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	141
AccB1I	GGYRCC	1 cut(s)	353
AccBSI	CCGCTC	1 cut(s)	162
AciI	CCGC	5 cut(s)	16, 90, 160, 174, 184
AclWI	GGATC	2 cut(s)	93, 175
AcoI	YGGCCR	1 cut(s)	295
AcsI	RAATTY	1 cut(s)	361
AcuI	CTGAAG	1 cut(s)	67
AcyI	GRCGYC	1 cut(s)	138
AdeI	CACNNNGTG	1 cut(s)	70
AgsI	TTSAA	2 cut(s)	235, 253
AjnI	CCWGG	1 cut(s)	348
AloI	GAACNNNNNNTCC	2 cut(s)	29, 61
Alw26I	GTCTC	2 cut(s)	49, 55
AlwI	GGATC	2 cut(s)	93, 175
AoxI	GGCC	2 cut(s)	87, 295
ApeKI	GCWGC	2 cut(s)	226, 277
ApoI	RAATTY	1 cut(s)	361
AspS9I	GGNCC	3 cut(s)	28, 87, 346
AsuHPI	GGTGA	2 cut(s)	146, 193
AvaII	GGWCC	2 cut(s)	28, 346
BalI	TGGCCA	1 cut(s)	297
BanI	GGYRCC	1 cut(s)	353
BbvI	GCAGC	2 cut(s)	213, 289
BccI	CCATC	1 cut(s)	110
BciT130I	CCWGG	1 cut(s)	350
BcoDI	GTCTC	2 cut(s)	49, 55
BfmI	CTRYAG	1 cut(s)	94
BisI	GCNGC	4 cut(s)	90, 174, 227, 278
BlsI	GCNGC	4 cut(s)	91, 175, 228, 279
Bme1390I	CCNGG	1 cut(s)	350
Bme18I	GGWCC	2 cut(s)	28, 346
BmgT120I	GGNCC	3 cut(s)	28, 87, 346
BmiI	GGNNCC	2 cut(s)	30, 355
BmrFI	CCNGG	1 cut(s)	350
BsaHI	GRCGYC	1 cut(s)	138
BsaI	GGTCTC	1 cut(s)	49
BsaJI	CCNNGG	2 cut(s)	210, 349
BsaXI	ACNNNNNCTCC	4 cut(s)	29, 59, 146, 176
Bse1I	ACTGG	1 cut(s)	298
Bse3DI	GCAATG	1 cut(s)	246
BseBI	CCWGG	1 cut(s)	350
BseDI	CCNNGG	2 cut(s)	210, 349
BseGI	GGATG	2 cut(s)	102, 345
BseMI	GCAATG	1 cut(s)	246
BseMII	CTCAG	1 cut(s)	255
BseNI	ACTGG	1 cut(s)	298
BseXI	GCAGC	2 cut(s)	213, 289
BshFI	GGCC	2 cut(s)	89, 297
BshNI	GGYRCC	1 cut(s)	353
BslFI	GGGAC	1 cut(s)	14
BsmAI	GTCTC	2 cut(s)	49, 55
BsmFI	GGGAC	1 cut(s)	14
BsnI	GGCC	2 cut(s)	89, 297
Bso31I	GGTCTC	1 cut(s)	49
Bsp143I	GATC	2 cut(s)	98, 180
BspACI	CCGC	5 cut(s)	16, 90, 160, 174, 184
BspANI	GGCC	2 cut(s)	89, 297
BspCNI	CTCAG	1 cut(s)	256
BspLI	GGNNCC	2 cut(s)	30, 355
BspPI	GGATC	2 cut(s)	93, 175
BspQI	GCTCTTC	1 cut(s)	236
BspT107I	GGYRCC	1 cut(s)	353
BspTNI	GGTCTC	1 cut(s)	49
BsrBI	CCGCTC	1 cut(s)	162
BsrDI	GCAATG	1 cut(s)	246
BsrI	ACTGG	1 cut(s)	298
BssECI	CCNNGG	2 cut(s)	210, 349
BssMI	GATC	2 cut(s)	98, 180
BssNI	GRCGYC	1 cut(s)	138
BssT1I	CCWWGG	1 cut(s)	210
Bst2UI	CCWGG	1 cut(s)	350
Bst6I	CTCTTC	2 cut(s)	236, 240
BstACI	GRCGYC	1 cut(s)	138
BstC8I	GCNNGC	3 cut(s)	188, 192, 270
BstDEI	CTNAG	1 cut(s)	264
BstF5I	GGATG	2 cut(s)	102, 345
BstKTI	GATC	2 cut(s)	101, 183
BstMAI	GTCTC	2 cut(s)	49, 55
BstMBI	GATC	2 cut(s)	98, 180
BstMWI	GCNNNNNNNGC	1 cut(s)	274
BstNI	CCWGG	1 cut(s)	350
BstNSI	RCATGY	1 cut(s)	272
BstSCI	CCNGG	1 cut(s)	348
BstSFI	CTRYAG	1 cut(s)	94
BstV1I	GCAGC	2 cut(s)	213, 289
BstX2I	RGATCY	2 cut(s)	98, 180
BstXI	CCANNNNNNTGG	1 cut(s)	293
BstYI	RGATCY	2 cut(s)	98, 180
BsuRI	GGCC	2 cut(s)	89, 297
BtsCI	GGATG	2 cut(s)	102, 345
BtsI	GCAGTG	1 cut(s)	11
BtsIMutI	CAGTG	2 cut(s)	11, 261
Cac8I	GCNNGC	3 cut(s)	188, 192, 270
Cfr13I	GGNCC	3 cut(s)	28, 87, 346
CviAII	CATG	3 cut(s)	115, 269, 325
CviJI	RGCY	2 cut(s)	89, 297
CviKI_1	RGCY	2 cut(s)	89, 297
DdeI	CTNAG	1 cut(s)	264
DpnI	GATC	2 cut(s)	100, 182
DpnII	GATC	2 cut(s)	98, 180
DraIII	CACNNNGTG	1 cut(s)	70
EaeI	YGGCCR	1 cut(s)	295
Eam1104I	CTCTTC	2 cut(s)	236, 240
EarI	CTCTTC	2 cut(s)	236, 240
Eco130I	CCWWGG	1 cut(s)	210
Eco31I	GGTCTC	1 cut(s)	49
Eco47I	GGWCC	2 cut(s)	28, 346
Eco57I	CTGAAG	1 cut(s)	67
EcoO109I	RGGNCCY	1 cut(s)	28
EcoRII	CCWGG	1 cut(s)	348
EcoT14I	CCWWGG	1 cut(s)	210
ErhI	CCWWGG	1 cut(s)	210
FaeI	CATG	3 cut(s)	118, 272, 328
FaiI	YATR	5 cut(s)	116, 224, 270, 303, 326
FaqI	GGGAC	1 cut(s)	14
FatI	CATG	3 cut(s)	114, 268, 324
Fnu4HI	GCNGC	4 cut(s)	90, 174, 227, 278
FokI	GGATG	2 cut(s)	89, 352
Fsp4HI	GCNGC	4 cut(s)	90, 174, 227, 278
GluI	GCNGC	4 cut(s)	90, 174, 227, 278
HaeIII	GGCC	2 cut(s)	89, 297
Hin1I	GRCGYC	1 cut(s)	138
Hin1II	CATG	3 cut(s)	118, 272, 328
HinfI	GANTC	1 cut(s)	321
HphI	GGTGA	2 cut(s)	146, 193
Hpy166II	GTNNAC	1 cut(s)	9
Hpy8I	GTNNAC	1 cut(s)	9
Hpy99I	CGWCG	4 cut(s)	143, 146, 170, 173
HpyAV	CCTTC	4 cut(s)	19, 159, 311, 337
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	2 cut(s)	272, 328
HpyF10VI	GCNNNNNNNGC	1 cut(s)	274
HpyF3I	CTNAG	1 cut(s)	264
HpySE526I	ACGT	1 cut(s)	138
Hsp92I	GRCGYC	1 cut(s)	138
Hsp92II	CATG	3 cut(s)	118, 272, 328
Kzo9I	GATC	2 cut(s)	98, 180
LguI	GCTCTTC	1 cut(s)	236
LmnI	GCTCC	2 cut(s)	18, 167
LpnPI	CCDG	6 cut(s)	70, 106, 311, 321, 335, 362
Lsp1109I	GCAGC	2 cut(s)	213, 289
MaeII	ACGT	1 cut(s)	138
MaeIII	GTNAC	1 cut(s)	199
MalI	GATC	2 cut(s)	100, 182
MbiI	CCGCTC	1 cut(s)	162
MboI	GATC	2 cut(s)	98, 180
MboII	GAAGA	3 cut(s)	73, 223, 257
MflI	RGATCY	2 cut(s)	98, 180
MlsI	TGGCCA	1 cut(s)	297
MluCI	AATT	2 cut(s)	361, 388
MluNI	TGGCCA	1 cut(s)	297
MlyI	GAGTC	1 cut(s)	315
MnlI	CCTC	5 cut(s)	59, 140, 167, 205, 367
Mox20I	TGGCCA	1 cut(s)	297
MscI	TGGCCA	1 cut(s)	297
MslI	CAYNNNNRTG	1 cut(s)	221
Msp20I	TGGCCA	1 cut(s)	297
MspR9I	CCNGG	1 cut(s)	350
MvaI	CCWGG	1 cut(s)	350
MwoI	GCNNNNNNNGC	1 cut(s)	274
NdeII	GATC	2 cut(s)	98, 180
NlaIII	CATG	3 cut(s)	118, 272, 328
NlaIV	GGNNCC	2 cut(s)	30, 355
NmeAIII	GCCGAG	1 cut(s)	202
NmuCI	GTSAC	1 cut(s)	199
NspI	RCATGY	1 cut(s)	272
PaeI	GCATGC	1 cut(s)	272
PciSI	GCTCTTC	1 cut(s)	236
PcsI	WCGNNNNNNNCGW	1 cut(s)	174
PflFI	GACNNNGTC	1 cut(s)	140
PkrI	GCNGC	4 cut(s)	91, 175, 228, 279
PleI	GAGTC	1 cut(s)	315
PpsI	GAGTC	1 cut(s)	315
PpuMI	RGGWCCY	1 cut(s)	28
Psp5II	RGGWCCY	1 cut(s)	28
Psp6I	CCWGG	1 cut(s)	348
PspGI	CCWGG	1 cut(s)	348
PspN4I	GGNNCC	2 cut(s)	30, 355
PspPI	GGNCC	3 cut(s)	28, 87, 346
PspPPI	RGGWCCY	1 cut(s)	28
PsuI	RGATCY	2 cut(s)	98, 180
PsyI	GACNNNGTC	1 cut(s)	140
RseI	CAYNNNNRTG	1 cut(s)	221
SapI	GCTCTTC	1 cut(s)	236
SatI	GCNGC	4 cut(s)	90, 174, 227, 278
Sau3AI	GATC	2 cut(s)	98, 180
Sau96I	GGNCC	3 cut(s)	28, 87, 346
SchI	GAGTC	1 cut(s)	315
ScrFI	CCNGG	1 cut(s)	350
SetI	ASST	5 cut(s)	30, 132, 141, 159, 216
SfcI	CTRYAG	1 cut(s)	94
SinI	GGWCC	2 cut(s)	28, 346
SmiMI	CAYNNNNRTG	1 cut(s)	221
SphI	GCATGC	1 cut(s)	272
Sse9I	AATT	2 cut(s)	361, 388
SsiI	CCGC	5 cut(s)	16, 90, 160, 174, 184
StyD4I	CCNGG	1 cut(s)	348
StyI	CCWWGG	1 cut(s)	210
TaiI	ACGT	1 cut(s)	141
TaqI	TCGA	3 cut(s)	51, 75, 359
TaqII	GACCGA	1 cut(s)	31
TasI	AATT	2 cut(s)	361, 388
TauI	GCSGC	2 cut(s)	92, 176
TscAI	CASTG	2 cut(s)	18, 268
TseFI	GTSAC	1 cut(s)	199
TseI	GCWGC	2 cut(s)	226, 277
Tsp45I	GTSAC	1 cut(s)	199
TspDTI	ATGAA	2 cut(s)	69, 356
TspGWI	ACGGA	2 cut(s)	154, 187
TspRI	CASTG	2 cut(s)	18, 268
Tth111I	GACNNNGTC	1 cut(s)	140
VpaK11BI	GGWCC	2 cut(s)	28, 346
XapI	RAATTY	1 cut(s)	361
XceI	RCATGY	1 cut(s)	272
ZraI	GACGTC	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.