Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0008503

Physical Location & Seq

Genomic Coordinates Forward (+)

4051710 .. 4053855

Gene Structure 2146 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1047200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGTCGTTTATTCAGCGGGCAGTGAAGGTGCCACCGAACTCGGCGTCTCTGGACGAAGCCAGGCACCGAGTCTTCGACTTCTTCAGGGCCGCCTGCAGATCCATCCCCACCATCATGGACATCTACAACCTCGACGACGTCGTTGCGCCCTCTCACCTCCGCTCCGCCGTCGCCTCCGAGATCCGCAAGAACGCCTCCGTCACTAACCCTAAGGTCATCGATATGCTGCTCTTCAAGGCAATGGAAGAGTTGAATAACATCACCGAGCATGCAAAGCAGCGACACCACATCATTGGCCAGTATGTGGTTGGTCACCAAGGGCTTGTCCAGGATTTGGGCACCAAAGATCAGGGGGCCTCTGCTTTTCTCAAAGATTTTTATAAGAGCAATTATTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Complex1_LYR

Protein Analysis

133

Amino Acids

14.92

Weight (kDa)

8.76

Isoelectric Point (pI)

43.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12260
fragaria_vesca	FvH4_7g03540
malus_domestica	MD02G1279300.v1.1 MD07G1047200.v1.1
prunus_persica	Prupe.2G041500_v2.0.a1
pyrus_communis	pycom02g23930 pycom07g03410
rosa_chinensis	RchiOBHm_Chr1g0325871 RchiOBHm_Chr1g0325941
rosa_laevigata	RLG00000030098
rosa_multiflora	Rmu_sc0008679.1_g000002 Rmu_sc0008679.1_g000022 Rmu_sc0013657.1_g000004
rosa_roxburghii	Rroxscaffold_4G00324220
rosa_rugosa	Rorug01G0055800
rosa_samantha	Rh1AG072000 Rh1BG058900 Rh1CG071400 Rh1DG076200 Rh1DG076400 Rh1DG076700 Rh1DG077000
rosa_wichuraiana	Rw1G005850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	381
AatII	GACGTC	1 cut(s)	141
AccB1I	GGYRCC	3 cut(s)	28, 63, 338
AccB7I	CCANNNNNTGG	2 cut(s)	304, 334
AccBSI	CCGCTC	1 cut(s)	162
AciI	CCGC	5 cut(s)	16, 90, 160, 165, 184
AclWI	GGATC	2 cut(s)	93, 175
AcoI	YGGCCR	1 cut(s)	295
AcuI	CTGAAG	1 cut(s)	67
AcyI	GRCGYC	2 cut(s)	44, 138
AfiI	CCNNNNNNNGG	2 cut(s)	304, 334
AgsI	TTSAA	2 cut(s)	235, 253
AjnI	CCWGG	2 cut(s)	59, 327
Alw26I	GTCTC	1 cut(s)	51
AlwI	GGATC	2 cut(s)	93, 175
AoxI	GGCC	3 cut(s)	87, 295, 354
ApeKI	GCWGC	2 cut(s)	226, 277
ArsI	GACNNNNNNTTYG	2 cut(s)	29, 61
AspLEI	GCGC	1 cut(s)	148
AspS9I	GGNCC	2 cut(s)	87, 354
AsuHPI	GGTGA	3 cut(s)	146, 253, 305
AxyI	CCTNAGG	1 cut(s)	210
BaeGI	GKGCMC	1 cut(s)	341
BalI	TGGCCA	1 cut(s)	297
BanI	GGYRCC	3 cut(s)	28, 63, 338
BbsI	GAAGAC	1 cut(s)	64
BbvI	GCAGC	2 cut(s)	213, 289
BccI	CCATC	2 cut(s)	110, 119
BceAI	ACGGC	1 cut(s)	152
BcgI	CGANNNNNNTGC	2 cut(s)	125, 159
BciT130I	CCWGG	2 cut(s)	61, 329
BcoDI	GTCTC	1 cut(s)	51
BfmI	CTRYAG	1 cut(s)	94
BisI	GCNGC	3 cut(s)	90, 227, 278
BlsI	GCNGC	3 cut(s)	91, 228, 279
Bme1390I	CCNGG	2 cut(s)	61, 329
BmgT120I	GGNCC	2 cut(s)	87, 354
BmiI	GGNNCC	4 cut(s)	30, 65, 340, 355
BmrFI	CCNGG	2 cut(s)	61, 329
BpiI	GAAGAC	1 cut(s)	64
Bsa29I	ATCGAT	1 cut(s)	219
BsaHI	GRCGYC	2 cut(s)	44, 138
BsaJI	CCNNGG	1 cut(s)	316
BsaXI	ACNNNNNCTCC	2 cut(s)	146, 176
Bsc4I	CCNNNNNNNGG	2 cut(s)	304, 334
Bse1I	ACTGG	1 cut(s)	298
Bse21I	CCTNAGG	1 cut(s)	210
Bse3DI	GCAATG	1 cut(s)	246
BseBI	CCWGG	2 cut(s)	61, 329
BseCI	ATCGAT	1 cut(s)	219
BseDI	CCNNGG	1 cut(s)	316
BseGI	GGATG	1 cut(s)	102
BseLI	CCNNNNNNNGG	2 cut(s)	304, 334
BseMI	GCAATG	1 cut(s)	246
BseNI	ACTGG	1 cut(s)	298
BseSI	GKGCMC	1 cut(s)	341
BseXI	GCAGC	2 cut(s)	213, 289
BshFI	GGCC	3 cut(s)	89, 297, 356
BshNI	GGYRCC	3 cut(s)	28, 63, 338
BshVI	ATCGAT	1 cut(s)	219
BslI	CCNNNNNNNGG	2 cut(s)	304, 334
BsmAI	GTCTC	1 cut(s)	51
BsmBI	CGTCTC	1 cut(s)	51
BsnI	GGCC	3 cut(s)	89, 297, 356
Bsp1286I	GDGCHC	1 cut(s)	341
Bsp143I	GATC	3 cut(s)	98, 180, 346
BspACI	CCGC	5 cut(s)	16, 90, 160, 165, 184
BspANI	GGCC	3 cut(s)	89, 297, 356
BspDI	ATCGAT	1 cut(s)	219
BspLI	GGNNCC	4 cut(s)	30, 65, 340, 355
BspMAI	CTGCAG	1 cut(s)	98
BspPI	GGATC	2 cut(s)	93, 175
BspQI	GCTCTTC	1 cut(s)	236
BspT107I	GGYRCC	3 cut(s)	28, 63, 338
BsrBI	CCGCTC	1 cut(s)	162
BsrDI	GCAATG	1 cut(s)	246
BsrI	ACTGG	1 cut(s)	298
BssECI	CCNNGG	1 cut(s)	316
BssMI	GATC	3 cut(s)	98, 180, 346
BssNI	GRCGYC	2 cut(s)	44, 138
BssT1I	CCWWGG	1 cut(s)	316
Bst2UI	CCWGG	2 cut(s)	61, 329
Bst6I	CTCTTC	2 cut(s)	236, 240
BstACI	GRCGYC	2 cut(s)	44, 138
BstC8I	GCNNGC	3 cut(s)	18, 94, 270
BstDEI	CTNAG	1 cut(s)	210
BstEII	GGTNACC	1 cut(s)	311
BstF5I	GGATG	1 cut(s)	102
BstHHI	GCGC	1 cut(s)	148
BstKTI	GATC	3 cut(s)	101, 183, 349
BstMAI	GTCTC	1 cut(s)	51
BstMBI	GATC	3 cut(s)	98, 180, 346
BstMWI	GCNNNNNNNGC	1 cut(s)	274
BstNI	CCWGG	2 cut(s)	61, 329
BstNSI	RCATGY	1 cut(s)	272
BstPI	GGTNACC	1 cut(s)	311
BstSCI	CCNGG	2 cut(s)	59, 327
BstSFI	CTRYAG	1 cut(s)	94
BstSLI	GKGCMC	1 cut(s)	341
BstV1I	GCAGC	2 cut(s)	213, 289
BstV2I	GAAGAC	1 cut(s)	64
BstX2I	RGATCY	2 cut(s)	98, 180
BstXI	CCANNNNNNTGG	2 cut(s)	115, 293
BstYI	RGATCY	2 cut(s)	98, 180
Bsu15I	ATCGAT	1 cut(s)	219
Bsu36I	CCTNAGG	1 cut(s)	210
BsuRI	GGCC	3 cut(s)	89, 297, 356
BsuTUI	ATCGAT	1 cut(s)	219
BtsCI	GGATG	1 cut(s)	102
BtsI	GCAGTG	1 cut(s)	27
BtsIMutI	CAGTG	1 cut(s)	27
Cac8I	GCNNGC	3 cut(s)	18, 94, 270
CfoI	GCGC	1 cut(s)	148
Cfr13I	GGNCC	2 cut(s)	87, 354
ClaI	ATCGAT	1 cut(s)	219
CseI	GACGC	1 cut(s)	33
CviAII	CATG	2 cut(s)	115, 269
CviJI	RGCY	5 cut(s)	59, 89, 297, 322, 356
CviKI_1	RGCY	5 cut(s)	59, 89, 297, 322, 356
DdeI	CTNAG	1 cut(s)	210
DpnI	GATC	3 cut(s)	100, 182, 348
DpnII	GATC	3 cut(s)	98, 180, 346
EaeI	YGGCCR	1 cut(s)	295
Eam1104I	CTCTTC	2 cut(s)	236, 240
EarI	CTCTTC	2 cut(s)	236, 240
EciI	GGCGGA	1 cut(s)	154
Eco130I	CCWWGG	1 cut(s)	316
Eco57I	CTGAAG	1 cut(s)	67
Eco81I	CCTNAGG	1 cut(s)	210
Eco91I	GGTNACC	1 cut(s)	311
EcoO109I	RGGNCCY	1 cut(s)	354
EcoO65I	GGTNACC	1 cut(s)	311
EcoRII	CCWGG	2 cut(s)	59, 327
EcoT14I	CCWWGG	1 cut(s)	316
ErhI	CCWWGG	1 cut(s)	316
Esp3I	CGTCTC	1 cut(s)	51
FaeI	CATG	2 cut(s)	118, 272
FaiI	YATR	5 cut(s)	116, 224, 270, 303, 381
FatI	CATG	2 cut(s)	114, 268
FauI	CCCGC	1 cut(s)	9
Fnu4HI	GCNGC	3 cut(s)	90, 227, 278
FokI	GGATG	1 cut(s)	89
Fsp4HI	GCNGC	3 cut(s)	90, 227, 278
GlaI	GCGC	1 cut(s)	147
GluI	GCNGC	3 cut(s)	90, 227, 278
HaeIII	GGCC	3 cut(s)	89, 297, 356
HgaI	GACGC	1 cut(s)	33
HhaI	GCGC	1 cut(s)	148
Hin1I	GRCGYC	2 cut(s)	44, 138
Hin1II	CATG	2 cut(s)	118, 272
Hin6I	GCGC	1 cut(s)	146
HinP1I	GCGC	1 cut(s)	146
HinfI	GANTC	1 cut(s)	69
HphI	GGTGA	3 cut(s)	146, 253, 305
Hpy188I	TCNGA	1 cut(s)	178
Hpy188III	TCNNGA	1 cut(s)	50
Hpy99I	CGWCG	4 cut(s)	137, 140, 143, 173
HpyAV	CCTTC	1 cut(s)	19
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	2 cut(s)	96, 272
HpyF10VI	GCNNNNNNNGC	1 cut(s)	274
HpyF3I	CTNAG	1 cut(s)	210
HpySE526I	ACGT	1 cut(s)	138
Hsp92I	GRCGYC	2 cut(s)	44, 138
Hsp92II	CATG	2 cut(s)	118, 272
HspAI	GCGC	1 cut(s)	146
Kzo9I	GATC	3 cut(s)	98, 180, 346
LguI	GCTCTTC	1 cut(s)	236
LmnI	GCTCC	1 cut(s)	167
LpnPI	CCDG	9 cut(s)	35, 46, 70, 73, 106, 311, 314, 335, 341
Lsp1109I	GCAGC	2 cut(s)	213, 289
MaeII	ACGT	1 cut(s)	138
MaeIII	GTNAC	2 cut(s)	199, 311
MalI	GATC	3 cut(s)	100, 182, 348
MbiI	CCGCTC	1 cut(s)	162
MboI	GATC	3 cut(s)	98, 180, 346
MboII	GAAGA	4 cut(s)	64, 73, 223, 257
MflI	RGATCY	2 cut(s)	98, 180
MhlI	GDGCHC	1 cut(s)	341
MlsI	TGGCCA	1 cut(s)	297
MluCI	AATT	1 cut(s)	388
MluNI	TGGCCA	1 cut(s)	297
MlyI	GAGTC	1 cut(s)	78
MnlI	CCTC	6 cut(s)	140, 160, 167, 184, 205, 367
Mox20I	TGGCCA	1 cut(s)	297
MscI	TGGCCA	1 cut(s)	297
MslI	CAYNNNNRTG	2 cut(s)	113, 221
Msp20I	TGGCCA	1 cut(s)	297
MspA1I	CMGCKG	1 cut(s)	16
MspR9I	CCNGG	2 cut(s)	61, 329
MvaI	CCWGG	2 cut(s)	61, 329
MwoI	GCNNNNNNNGC	1 cut(s)	274
NdeII	GATC	3 cut(s)	98, 180, 346
NlaIII	CATG	2 cut(s)	118, 272
NlaIV	GGNNCC	4 cut(s)	30, 65, 340, 355
NmeAIII	GCCGAG	1 cut(s)	20
NmuCI	GTSAC	2 cut(s)	199, 311
NspI	RCATGY	1 cut(s)	272
PaeI	GCATGC	1 cut(s)	272
PciSI	GCTCTTC	1 cut(s)	236
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PflFI	GACNNNGTC	1 cut(s)	137
PflMI	CCANNNNNTGG	2 cut(s)	304, 334
PfoI	TCCNGGA	1 cut(s)	327
PkrI	GCNGC	3 cut(s)	91, 228, 279
PleI	GAGTC	1 cut(s)	77
PpsI	GAGTC	1 cut(s)	77
PsiI	TTATAA	1 cut(s)	381
Psp6I	CCWGG	2 cut(s)	59, 327
PspEI	GGTNACC	1 cut(s)	311
PspGI	CCWGG	2 cut(s)	59, 327
PspN4I	GGNNCC	4 cut(s)	30, 65, 340, 355
PspPI	GGNCC	2 cut(s)	87, 354
PstI	CTGCAG	1 cut(s)	98
PsuI	RGATCY	2 cut(s)	98, 180
PsyI	GACNNNGTC	1 cut(s)	137
RseI	CAYNNNNRTG	2 cut(s)	113, 221
SapI	GCTCTTC	1 cut(s)	236
SatI	GCNGC	3 cut(s)	90, 227, 278
Sau3AI	GATC	3 cut(s)	98, 180, 346
Sau96I	GGNCC	2 cut(s)	87, 354
SchI	GAGTC	1 cut(s)	78
ScrFI	CCNGG	2 cut(s)	61, 329
SduI	GDGCHC	1 cut(s)	341
SetI	ASST	5 cut(s)	30, 132, 141, 159, 216
SfcI	CTRYAG	1 cut(s)	94
SmiMI	CAYNNNNRTG	2 cut(s)	113, 221
SphI	GCATGC	1 cut(s)	272
Sse9I	AATT	1 cut(s)	388
SsiI	CCGC	5 cut(s)	16, 90, 160, 165, 184
StyD4I	CCNGG	2 cut(s)	59, 327
StyI	CCWWGG	1 cut(s)	316
TaiI	ACGT	1 cut(s)	141
TaqI	TCGA	3 cut(s)	75, 132, 219
TasI	AATT	1 cut(s)	388
TauI	GCSGC	1 cut(s)	92
TscAI	CASTG	1 cut(s)	27
TseFI	GTSAC	2 cut(s)	199, 311
TseI	GCWGC	2 cut(s)	226, 277
Tsp45I	GTSAC	2 cut(s)	199, 311
TspGWI	ACGGA	1 cut(s)	187
TspRI	CASTG	1 cut(s)	27
Tth111I	GACNNNGTC	1 cut(s)	137
Van91I	CCANNNNNTGG	2 cut(s)	304, 334
XceI	RCATGY	1 cut(s)	272
XcmI	CCANNNNNNNNNTGG	1 cut(s)	305
ZraI	GACGTC	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.