Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0008503

Physical Location & Seq

Genomic Coordinates Forward (+)

21999276 .. 22001286

Gene Structure 2011 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g23930.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGTCGTTTATTCAGCGGGCCGTGAAGGTGCCACCGAACTCGGCCTCTCTGGACGAAGCCCGGCACCGAGTCTTCGACTTCTTCAGGGCCGCCTGCAGATCCATCCCCACCATCATGGAAATCTACAACCTCGACGACGTCGTTACGCCCTCTCACCTCCGCACCGTCGTCGCCTCCGAGATCCGTAAGAACGCTAACGTCACTAACCCTAAGGTCATCGATATGCTGCTCTTCAAGGCAATGGAAGAGTTAAATAACATCACCGAGCATGCAAAGCAGCGACACCACATCATTGGCCAGTACGTCGTTGGTCAGCAAGGGCTTGTGCAGGATTTGGGTACCAACGATCAGGGGACCTCTGCTTTTCTTAAAGAATTTTATAAGAGCAATTATTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Complex1_LYR

Protein Analysis

133

Amino Acids

15.05

Weight (kDa)

7.92

Isoelectric Point (pI)

40.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12260
fragaria_vesca	FvH4_7g03540
malus_domestica	MD02G1279300.v1.1 MD07G1047200.v1.1
prunus_persica	Prupe.2G041500_v2.0.a1
pyrus_communis	pycom02g23930 pycom07g03410
rosa_chinensis	RchiOBHm_Chr1g0325871 RchiOBHm_Chr1g0325941
rosa_laevigata	RLG00000030098
rosa_multiflora	Rmu_sc0008679.1_g000002 Rmu_sc0008679.1_g000022 Rmu_sc0013657.1_g000004
rosa_roxburghii	Rroxscaffold_4G00324220
rosa_rugosa	Rorug01G0055800
rosa_samantha	Rh1AG072000 Rh1BG058900 Rh1CG071400 Rh1DG076200 Rh1DG076400 Rh1DG076700 Rh1DG077000
rosa_wichuraiana	Rw1G005850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	381
AatII	GACGTC	1 cut(s)	141
Acc65I	GGTACC	1 cut(s)	338
AccB1I	GGYRCC	3 cut(s)	28, 63, 338
AciI	CCGC	3 cut(s)	16, 90, 160
AclWI	GGATC	2 cut(s)	93, 175
AcoI	YGGCCR	1 cut(s)	295
AcsI	RAATTY	1 cut(s)	374
AcuI	CTGAAG	1 cut(s)	67
AcyI	GRCGYC	1 cut(s)	138
AfaI	GTAC	2 cut(s)	302, 340
AgsI	TTSAA	1 cut(s)	235
AlwI	GGATC	2 cut(s)	93, 175
AoxI	GGCC	4 cut(s)	18, 42, 87, 295
ApeKI	GCWGC	2 cut(s)	226, 277
ApoI	RAATTY	1 cut(s)	374
Asp718I	GGTACC	1 cut(s)	338
AspS9I	GGNCC	3 cut(s)	18, 87, 354
AsuC2I	CCSGG	1 cut(s)	61
AsuHPI	GGTGA	2 cut(s)	146, 253
AvaII	GGWCC	1 cut(s)	354
AxyI	CCTNAGG	1 cut(s)	210
BalI	TGGCCA	1 cut(s)	297
BanI	GGYRCC	3 cut(s)	28, 63, 338
BbsI	GAAGAC	1 cut(s)	64
BbvI	GCAGC	2 cut(s)	213, 289
BccI	CCATC	2 cut(s)	110, 119
BceAI	ACGGC	1 cut(s)	5
BcgI	CGANNNNNNTGC	2 cut(s)	151, 185
BcnI	CCSGG	1 cut(s)	61
BfmI	CTRYAG	1 cut(s)	94
BisI	GCNGC	3 cut(s)	90, 227, 278
BlsI	GCNGC	3 cut(s)	91, 228, 279
Bme1390I	CCNGG	1 cut(s)	61
Bme18I	GGWCC	1 cut(s)	354
BmgT120I	GGNCC	3 cut(s)	18, 87, 354
BmiI	GGNNCC	4 cut(s)	30, 65, 340, 355
BmrFI	CCNGG	1 cut(s)	61
BpiI	GAAGAC	1 cut(s)	64
BpuMI	CCSGG	1 cut(s)	61
Bsa29I	ATCGAT	1 cut(s)	219
BsaHI	GRCGYC	1 cut(s)	138
Bse1I	ACTGG	1 cut(s)	298
Bse21I	CCTNAGG	1 cut(s)	210
Bse3DI	GCAATG	1 cut(s)	246
BseCI	ATCGAT	1 cut(s)	219
BseGI	GGATG	1 cut(s)	102
BseMI	GCAATG	1 cut(s)	246
BseNI	ACTGG	1 cut(s)	298
BseXI	GCAGC	2 cut(s)	213, 289
BsgI	GTGCAG	1 cut(s)	347
BshFI	GGCC	4 cut(s)	20, 44, 89, 297
BshNI	GGYRCC	3 cut(s)	28, 63, 338
BshVI	ATCGAT	1 cut(s)	219
BsiSI	CCGG	1 cut(s)	61
BslFI	GGGAC	1 cut(s)	367
BsmFI	GGGAC	1 cut(s)	367
BsnI	GGCC	4 cut(s)	20, 44, 89, 297
Bsp143I	GATC	3 cut(s)	98, 180, 346
BspACI	CCGC	3 cut(s)	16, 90, 160
BspANI	GGCC	4 cut(s)	20, 44, 89, 297
BspDI	ATCGAT	1 cut(s)	219
BspLI	GGNNCC	4 cut(s)	30, 65, 340, 355
BspMAI	CTGCAG	1 cut(s)	98
BspPI	GGATC	2 cut(s)	93, 175
BspQI	GCTCTTC	1 cut(s)	236
BspT107I	GGYRCC	3 cut(s)	28, 63, 338
BsrDI	GCAATG	1 cut(s)	246
BsrI	ACTGG	1 cut(s)	298
BssMI	GATC	3 cut(s)	98, 180, 346
BssNI	GRCGYC	1 cut(s)	138
Bst4CI	ACNGT	1 cut(s)	166
Bst6I	CTCTTC	2 cut(s)	236, 240
BstACI	GRCGYC	1 cut(s)	138
BstC8I	GCNNGC	3 cut(s)	18, 94, 270
BstDEI	CTNAG	1 cut(s)	210
BstF5I	GGATG	1 cut(s)	102
BstKTI	GATC	3 cut(s)	101, 183, 349
BstMBI	GATC	3 cut(s)	98, 180, 346
BstMWI	GCNNNNNNNGC	1 cut(s)	274
BstNSI	RCATGY	1 cut(s)	272
BstSCI	CCNGG	1 cut(s)	59
BstSFI	CTRYAG	1 cut(s)	94
BstV1I	GCAGC	2 cut(s)	213, 289
BstV2I	GAAGAC	1 cut(s)	64
BstX2I	RGATCY	2 cut(s)	98, 180
BstXI	CCANNNNNNTGG	2 cut(s)	115, 293
BstYI	RGATCY	2 cut(s)	98, 180
Bsu15I	ATCGAT	1 cut(s)	219
Bsu36I	CCTNAGG	1 cut(s)	210
BsuRI	GGCC	4 cut(s)	20, 44, 89, 297
BsuTUI	ATCGAT	1 cut(s)	219
BtsCI	GGATG	1 cut(s)	102
Cac8I	GCNNGC	3 cut(s)	18, 94, 270
Cfr13I	GGNCC	3 cut(s)	18, 87, 354
ClaI	ATCGAT	1 cut(s)	219
Csp6I	GTAC	2 cut(s)	301, 339
CviAII	CATG	2 cut(s)	115, 269
CviJI	RGCY	6 cut(s)	20, 44, 59, 89, 297, 322
CviKI_1	RGCY	6 cut(s)	20, 44, 59, 89, 297, 322
CviQI	GTAC	2 cut(s)	301, 339
DdeI	CTNAG	1 cut(s)	210
DpnI	GATC	3 cut(s)	100, 182, 348
DpnII	GATC	3 cut(s)	98, 180, 346
EaeI	YGGCCR	1 cut(s)	295
Eam1104I	CTCTTC	2 cut(s)	236, 240
EarI	CTCTTC	2 cut(s)	236, 240
Eco47I	GGWCC	1 cut(s)	354
Eco57I	CTGAAG	1 cut(s)	67
Eco81I	CCTNAGG	1 cut(s)	210
EcoO109I	RGGNCCY	1 cut(s)	354
FaeI	CATG	2 cut(s)	118, 272
FaiI	YATR	4 cut(s)	116, 224, 270, 381
FaqI	GGGAC	1 cut(s)	367
FatI	CATG	2 cut(s)	114, 268
FauI	CCCGC	1 cut(s)	9
Fnu4HI	GCNGC	3 cut(s)	90, 227, 278
FokI	GGATG	1 cut(s)	89
Fsp4HI	GCNGC	3 cut(s)	90, 227, 278
GluI	GCNGC	3 cut(s)	90, 227, 278
HaeIII	GGCC	4 cut(s)	20, 44, 89, 297
HapII	CCGG	1 cut(s)	61
Hin1I	GRCGYC	1 cut(s)	138
Hin1II	CATG	2 cut(s)	118, 272
HinfI	GANTC	1 cut(s)	69
HpaII	CCGG	1 cut(s)	61
HphI	GGTGA	2 cut(s)	146, 253
Hpy188I	TCNGA	1 cut(s)	178
Hpy188III	TCNNGA	1 cut(s)	50
Hpy99I	CGWCG	6 cut(s)	137, 140, 143, 170, 173, 308
HpyAV	CCTTC	1 cut(s)	19
HpyCH4III	ACNGT	1 cut(s)	166
HpyCH4IV	ACGT	3 cut(s)	138, 198, 303
HpyCH4V	TGCA	3 cut(s)	96, 272, 328
HpyF10VI	GCNNNNNNNGC	1 cut(s)	274
HpyF3I	CTNAG	1 cut(s)	210
HpySE526I	ACGT	3 cut(s)	138, 198, 303
Hsp92I	GRCGYC	1 cut(s)	138
Hsp92II	CATG	2 cut(s)	118, 272
KpnI	GGTACC	1 cut(s)	342
Kzo9I	GATC	3 cut(s)	98, 180, 346
LguI	GCTCTTC	1 cut(s)	236
LpnPI	CCDG	7 cut(s)	35, 70, 74, 106, 311, 314, 335
Lsp1109I	GCAGC	2 cut(s)	213, 289
MaeII	ACGT	3 cut(s)	138, 198, 303
MaeIII	GTNAC	2 cut(s)	142, 199
MalI	GATC	3 cut(s)	100, 182, 348
MboI	GATC	3 cut(s)	98, 180, 346
MboII	GAAGA	4 cut(s)	64, 73, 223, 257
MflI	RGATCY	2 cut(s)	98, 180
MlsI	TGGCCA	1 cut(s)	297
MluCI	AATT	2 cut(s)	374, 388
MluNI	TGGCCA	1 cut(s)	297
MlyI	GAGTC	1 cut(s)	78
MnlI	CCTC	6 cut(s)	55, 140, 160, 167, 184, 367
Mox20I	TGGCCA	1 cut(s)	297
MscI	TGGCCA	1 cut(s)	297
MseI	TTAA	2 cut(s)	251, 369
MslI	CAYNNNNRTG	2 cut(s)	113, 221
Msp20I	TGGCCA	1 cut(s)	297
MspA1I	CMGCKG	1 cut(s)	16
MspI	CCGG	1 cut(s)	61
MspR9I	CCNGG	1 cut(s)	61
MwoI	GCNNNNNNNGC	1 cut(s)	274
NciI	CCSGG	1 cut(s)	61
NdeII	GATC	3 cut(s)	98, 180, 346
NlaIII	CATG	2 cut(s)	118, 272
NlaIV	GGNNCC	4 cut(s)	30, 65, 340, 355
NmeAIII	GCCGAG	1 cut(s)	20
NmuCI	GTSAC	1 cut(s)	199
NspI	RCATGY	1 cut(s)	272
PaeI	GCATGC	1 cut(s)	272
PciSI	GCTCTTC	1 cut(s)	236
PcsI	WCGNNNNNNNCGW	2 cut(s)	138, 174
PflFI	GACNNNGTC	1 cut(s)	137
PkrI	GCNGC	3 cut(s)	91, 228, 279
PleI	GAGTC	1 cut(s)	77
PpsI	GAGTC	1 cut(s)	77
PpuMI	RGGWCCY	1 cut(s)	354
PsiI	TTATAA	1 cut(s)	381
Psp5II	RGGWCCY	1 cut(s)	354
PspN4I	GGNNCC	4 cut(s)	30, 65, 340, 355
PspPI	GGNCC	3 cut(s)	18, 87, 354
PspPPI	RGGWCCY	1 cut(s)	354
PstI	CTGCAG	1 cut(s)	98
PsuI	RGATCY	2 cut(s)	98, 180
PsyI	GACNNNGTC	1 cut(s)	137
RsaI	GTAC	2 cut(s)	302, 340
RsaNI	GTAC	2 cut(s)	301, 339
RseI	CAYNNNNRTG	2 cut(s)	113, 221
SapI	GCTCTTC	1 cut(s)	236
SaqAI	TTAA	2 cut(s)	251, 369
SatI	GCNGC	3 cut(s)	90, 227, 278
Sau3AI	GATC	3 cut(s)	98, 180, 346
Sau96I	GGNCC	3 cut(s)	18, 87, 354
SchI	GAGTC	1 cut(s)	78
ScrFI	CCNGG	1 cut(s)	61
SetI	ASST	8 cut(s)	30, 132, 141, 159, 201, 216, 306, 359
SfcI	CTRYAG	1 cut(s)	94
SinI	GGWCC	1 cut(s)	354
SmiMI	CAYNNNNRTG	2 cut(s)	113, 221
SphI	GCATGC	1 cut(s)	272
Sse9I	AATT	2 cut(s)	374, 388
SsiI	CCGC	3 cut(s)	16, 90, 160
StyD4I	CCNGG	1 cut(s)	59
TaaI	ACNGT	1 cut(s)	166
TaiI	ACGT	3 cut(s)	141, 201, 306
TaqI	TCGA	3 cut(s)	75, 132, 219
TasI	AATT	2 cut(s)	374, 388
TauI	GCSGC	1 cut(s)	92
Tru1I	TTAA	2 cut(s)	251, 369
Tru9I	TTAA	2 cut(s)	251, 369
TseFI	GTSAC	1 cut(s)	199
TseI	GCWGC	2 cut(s)	226, 277
Tsp45I	GTSAC	1 cut(s)	199
TspGWI	ACGGA	1 cut(s)	173
Tth111I	GACNNNGTC	1 cut(s)	137
VpaK11BI	GGWCC	1 cut(s)	354
XapI	RAATTY	1 cut(s)	374
XceI	RCATGY	1 cut(s)	272
XcmI	CCANNNNNNNNNTGG	1 cut(s)	305
ZraI	GACGTC	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.