AT3G12870

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0012212
Physical Location & Seq
Reverse (-)
4094191 .. 4095112
922 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G12870.1

Sequence Viewer

Length: 621 bp
ATGGCGTCAGATCAGAGCACGAATCCACCGATCATGGAGGCAAAGACAAGACATCCTCTTCACCAGATCGCAGATACACCAACACACAAGCTTCTCCTGAAACAATGGTTAAAAGAAGAAGAGCTAATTCTAAGCCGTGTCTCTCACAAAGAATCTCAGATCGATTCTGTTCGAAGAGAAATCACTCAGCTCTACATCTTCTTCTTTCTCTTCCACTCCATTTCTCTGCTACTTCTCTTCCACGCTTCTTCATCCTCATCTTCCTCTGCTTCTTCCAGTGCTTGTAAAAGATCATGGATCCCTTCACTCTGCGCTCTGCTATCTTCCTTGGGGATCATTTGGGCGGTACGGTACAAATCTGAAGTGGAATCGCATCTTGAGAAGTTGTTGGAGAGGGAGAAAGAAGATGCGAAGCTGTTGCGTAAATGTGTTGAAGAGTTGAAGAAGAAAGGTATCGAATTTGATTTGCTTAAGGAAGTGGATGCGCTTCGTAGAGCCAAGAGTTTAAGAGTTGAGTCGAAGCCTGTGAAGAAATGGTCTGCTAGGGATTTTGTGACGCTCTTCTTCTTCTCTGTTTCGTGTTTGGTTCTTGCCATGATTAGACTCATTCTCTGCGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

206

Amino Acids

23.7

Weight (kDa)

9.21

Isoelectric Point (pI)

54.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012212)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12870
fragaria_vesca FvH4_3g15460
malus_domestica MD01G1075700.v1.1 MD05G1223200.v1.1 MD10G1204600.v1.1 MD12G1131000.v1.1
prunus_persica Prupe.4G137100_v2.0.a1
pyrus_communis pycom05g20560 pycom10g17530
rosa_chinensis RchiOBHm_Chr5g0025961
rosa_laevigata RLG00000032887
rosa_multiflora Rmu_sc0003020.1_g000010
rosa_roxburghii Rroxscaffold_1G00053280
rosa_rugosa Rorug05G0089900
rosa_samantha Rh5AG181700 Rh5BG179800 Rh5CG198200 Rh5DG180700
rosa_wichuraiana Rw5G016530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 344
AclWI GGATC 3 cut(s) 292, 305, 341
AcsI RAATTY 1 cut(s) 458
AcuI CTGAAG 1 cut(s) 381
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 2 cut(s) 348, 353
AflII CTTAAG 1 cut(s) 470
AgsI TTSAA 2 cut(s) 434, 442
AluBI AGCT 4 cut(s) 91, 124, 190, 415
AluI AGCT 4 cut(s) 91, 124, 190, 415
Alw21I GWGCWC 1 cut(s) 20
Alw26I GTCTC 1 cut(s) 145
AlwI GGATC 3 cut(s) 292, 305, 341
ApoI RAATTY 1 cut(s) 458
AspLEI GCGC 2 cut(s) 314, 487
AsuHPI GGTGA 1 cut(s) 53
AsuII TTCGAA 1 cut(s) 172
BamHI GGATCC 1 cut(s) 297
Bbv12I GWGCWC 1 cut(s) 20
BceAI ACGGC 1 cut(s) 120
BcgI CGANNNNNNTGC 2 cut(s) 400, 434
BcoDI GTCTC 1 cut(s) 145
BfaI CTAG 1 cut(s) 543
BfrI CTTAAG 1 cut(s) 470
BmiI GGNNCC 1 cut(s) 299
BmsI GCATC 3 cut(s) 382, 397, 472
Bpu14I TTCGAA 1 cut(s) 172
BpuEI CTTGAG 1 cut(s) 398
Bsa29I ATCGAT 1 cut(s) 162
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 1 cut(s) 327
Bse1I ACTGG 1 cut(s) 276
BseCI ATCGAT 1 cut(s) 162
BseDI CCNNGG 1 cut(s) 327
BseGI GGATG 3 cut(s) 52, 251, 487
BseMII CTCAG 2 cut(s) 170, 200
BseNI ACTGG 1 cut(s) 276
BshVI ATCGAT 1 cut(s) 162
BsiHKAI GWGCWC 1 cut(s) 20
BsmAI GTCTC 1 cut(s) 145
Bsp119I TTCGAA 1 cut(s) 172
Bsp1286I GDGCHC 1 cut(s) 20
Bsp143I GATC 7 cut(s) 10, 30, 66, 159, 290, 297, 333
BspACI CCGC 1 cut(s) 344
BspCNI CTCAG 2 cut(s) 169, 199
BspDI ATCGAT 1 cut(s) 162
BspLI GGNNCC 1 cut(s) 299
BspPI GGATC 3 cut(s) 292, 305, 341
BspQI GCTCTTC 2 cut(s) 114, 566
BspT104I TTCGAA 1 cut(s) 172
BspTI CTTAAG 1 cut(s) 470
BsrI ACTGG 1 cut(s) 276
BssECI CCNNGG 1 cut(s) 327
BssMI GATC 7 cut(s) 10, 30, 66, 159, 290, 297, 333
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 327
Bst4CI ACNGT 1 cut(s) 351
Bst6I CTCTTC 7 cut(s) 63, 114, 169, 215, 242, 429, 566
BstACI GRCGYC 1 cut(s) 5
BstAFI CTTAAG 1 cut(s) 470
BstBI TTCGAA 1 cut(s) 172
BstDEI CTNAG 3 cut(s) 131, 156, 186
BstF5I GGATG 3 cut(s) 52, 251, 487
BstHHI GCGC 2 cut(s) 314, 487
BstKTI GATC 7 cut(s) 13, 33, 69, 162, 293, 300, 336
BstMAI GTCTC 1 cut(s) 145
BstMBI GATC 7 cut(s) 10, 30, 66, 159, 290, 297, 333
BstX2I RGATCY 1 cut(s) 297
BstYI RGATCY 1 cut(s) 297
Bsu15I ATCGAT 1 cut(s) 162
BsuTUI ATCGAT 1 cut(s) 162
BtsCI GGATG 3 cut(s) 52, 251, 487
BtsIMutI CAGTG 1 cut(s) 283
CfoI GCGC 2 cut(s) 314, 487
ClaI ATCGAT 1 cut(s) 162
CseI GACGC 1 cut(s) 565
Csp6I GTAC 2 cut(s) 347, 352
CviAII CATG 3 cut(s) 34, 294, 595
CviJI RGCY 7 cut(s) 91, 124, 135, 190, 415, 497, 523
CviKI_1 RGCY 7 cut(s) 91, 124, 135, 190, 415, 497, 523
CviQI GTAC 2 cut(s) 347, 352
DdeI CTNAG 3 cut(s) 131, 156, 186
DpnI GATC 7 cut(s) 12, 32, 68, 161, 292, 299, 335
DpnII GATC 7 cut(s) 10, 30, 66, 159, 290, 297, 333
Eam1104I CTCTTC 7 cut(s) 63, 114, 169, 215, 242, 429, 566
EarI CTCTTC 7 cut(s) 63, 114, 169, 215, 242, 429, 566
Eco130I CCWWGG 1 cut(s) 327
Eco57I CTGAAG 1 cut(s) 381
EcoT14I CCWWGG 1 cut(s) 327
ErhI CCWWGG 1 cut(s) 327
FaeI CATG 3 cut(s) 37, 297, 598
FaiI YATR 3 cut(s) 35, 295, 596
FatI CATG 3 cut(s) 33, 293, 594
FokI GGATG 3 cut(s) 39, 238, 494
FspBI CTAG 1 cut(s) 543
GlaI GCGC 2 cut(s) 313, 486
HgaI GACGC 1 cut(s) 565
HhaI GCGC 2 cut(s) 314, 487
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 3 cut(s) 37, 297, 598
Hin6I GCGC 2 cut(s) 312, 485
HinP1I GCGC 2 cut(s) 312, 485
HindIII AAGCTT 1 cut(s) 89
HinfI GANTC 6 cut(s) 22, 152, 164, 368, 515, 603
HphI GGTGA 1 cut(s) 53
Hpy188I TCNGA 4 cut(s) 10, 15, 159, 361
Hpy188III TCNNGA 2 cut(s) 97, 377
HpyAV CCTTC 1 cut(s) 312
HpyCH4III ACNGT 1 cut(s) 351
HpyF3I CTNAG 3 cut(s) 131, 156, 186
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 3 cut(s) 37, 297, 598
HspAI GCGC 2 cut(s) 312, 485
Kzo9I GATC 7 cut(s) 10, 30, 66, 159, 290, 297, 333
LguI GCTCTTC 2 cut(s) 114, 566
LpnPI CCDG 4 cut(s) 77, 110, 289, 537
LweI GCATC 3 cut(s) 382, 397, 472
MaeI CTAG 1 cut(s) 543
MaeIII GTNAC 1 cut(s) 553
MalI GATC 7 cut(s) 12, 32, 68, 161, 292, 299, 335
MboI GATC 7 cut(s) 10, 30, 66, 159, 290, 297, 333
MflI RGATCY 1 cut(s) 297
MhlI GDGCHC 1 cut(s) 20
MluCI AATT 2 cut(s) 126, 458
MlyI GAGTC 2 cut(s) 524, 597
MmeI TCCRAC 1 cut(s) 369
MnlI CCTC 5 cut(s) 31, 66, 265, 274, 387
MseI TTAA 3 cut(s) 110, 471, 506
MspCI CTTAAG 1 cut(s) 470
NdeII GATC 7 cut(s) 10, 30, 66, 159, 290, 297, 333
NlaIII CATG 3 cut(s) 37, 297, 598
NlaIV GGNNCC 1 cut(s) 299
NmuCI GTSAC 1 cut(s) 553
NspV TTCGAA 1 cut(s) 172
PciSI GCTCTTC 2 cut(s) 114, 566
PcsI WCGNNNNNNNCGW 1 cut(s) 26
PfeI GAWTC 4 cut(s) 22, 152, 164, 368
PleI GAGTC 2 cut(s) 523, 597
PpsI GAGTC 2 cut(s) 523, 597
PspN4I GGNNCC 1 cut(s) 299
PsuI RGATCY 1 cut(s) 297
RsaI GTAC 2 cut(s) 348, 353
RsaNI GTAC 2 cut(s) 347, 352
SapI GCTCTTC 2 cut(s) 114, 566
SaqAI TTAA 3 cut(s) 110, 471, 506
Sau3AI GATC 7 cut(s) 10, 30, 66, 159, 290, 297, 333
SchI GAGTC 2 cut(s) 524, 597
SduI GDGCHC 1 cut(s) 20
SetI ASST 5 cut(s) 93, 126, 192, 417, 454
SfaNI GCATC 3 cut(s) 382, 397, 472
SfuI TTCGAA 1 cut(s) 172
SmlI CTYRAG 2 cut(s) 377, 470
SmoI CTYRAG 2 cut(s) 377, 470
Sse9I AATT 2 cut(s) 126, 458
SsiI CCGC 1 cut(s) 344
SspMI CTAG 1 cut(s) 543
StyI CCWWGG 1 cut(s) 327
TaaI ACNGT 1 cut(s) 351
TaqI TCGA 4 cut(s) 162, 172, 456, 518
TasI AATT 2 cut(s) 126, 458
TfiI GAWTC 4 cut(s) 22, 152, 164, 368
Tru1I TTAA 3 cut(s) 110, 471, 506
Tru9I TTAA 3 cut(s) 110, 471, 506
TscAI CASTG 1 cut(s) 283
TseFI GTSAC 1 cut(s) 553
Tsp45I GTSAC 1 cut(s) 553
TspDTI ATGAA 1 cut(s) 240
TspRI CASTG 1 cut(s) 283
Vha464I CTTAAG 1 cut(s) 470
XapI RAATTY 1 cut(s) 458
XspI CTAG 1 cut(s) 543
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.