MD12G1131000.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0012212
Physical Location & Seq
Reverse (-)
20605343 .. 20605739
397 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1131000.v1.1.491

Sequence Viewer

Length: 330 bp
ATGATGCTCTTCATCTTCTTCTTCCTCTTCCACTCCACGGCTCTCACCCTTCTCTTCAGTTCCTTGTTGTGGGACCCGCACTGGTTCGCGTGTATAAAAGCGACACGGAGGGGGCACCTGGAGAAGTTGTTGCAGAGAGAAAAGGAGGATAAGAACCTACTGGGAAAGTGCATTGAGGAGCTAAAGAAGAAAGGGTTAGAGTTCGATTTGTTGAAGGAGGTCGAAGCGCTGAGAAGGGCCAATAGTTTGAGAGTCGAAGCAAAGGCGGTGAGGAAGTGGAATGCCAAGGATTTTGTGATTCTGTTTTTCTTCATTGTGTCTTCCTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

12.91

Weight (kDa)

9.59

Isoelectric Point (pI)

43.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012212)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12870
fragaria_vesca FvH4_3g15460
malus_domestica MD01G1075700.v1.1 MD05G1223200.v1.1 MD10G1204600.v1.1 MD12G1131000.v1.1
prunus_persica Prupe.4G137100_v2.0.a1
pyrus_communis pycom05g20560 pycom10g17530
rosa_chinensis RchiOBHm_Chr5g0025961
rosa_laevigata RLG00000032887
rosa_multiflora Rmu_sc0003020.1_g000010
rosa_roxburghii Rroxscaffold_1G00053280
rosa_rugosa Rorug05G0089900
rosa_samantha Rh5AG181700 Rh5BG179800 Rh5CG198200 Rh5DG180700
rosa_wichuraiana Rw5G016530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 114
AccII CGCG 1 cut(s) 89
AciI CCGC 2 cut(s) 77, 266
AcuI CTGAAG 1 cut(s) 40
AfeI AGCGCT 1 cut(s) 228
AfiI CCNNNNNNNGG 2 cut(s) 37, 69
AgsI TTSAA 1 cut(s) 214
AjnI CCWGG 1 cut(s) 117
AluBI AGCT 1 cut(s) 181
AluI AGCT 1 cut(s) 181
Aor51HI AGCGCT 1 cut(s) 228
AoxI GGCC 1 cut(s) 237
AspLEI GCGC 1 cut(s) 229
AspS9I GGNCC 2 cut(s) 73, 237
AsuHPI GGTGA 2 cut(s) 37, 280
AvaII GGWCC 1 cut(s) 73
BaeGI GKGCMC 1 cut(s) 117
BanI GGYRCC 1 cut(s) 114
BbsI GAAGAC 1 cut(s) 312
BceAI ACGGC 1 cut(s) 54
BciT130I CCWGG 1 cut(s) 119
BfoI RGCGCY 1 cut(s) 230
Bme1390I CCNGG 1 cut(s) 119
Bme18I GGWCC 1 cut(s) 73
BmgT120I GGNCC 2 cut(s) 73, 237
BmiI GGNNCC 3 cut(s) 74, 75, 116
BmrFI CCNGG 1 cut(s) 119
BmrI ACTGGG 1 cut(s) 170
BmuI ACTGGG 1 cut(s) 170
BpiI GAAGAC 1 cut(s) 312
BpmI CTGGAG 1 cut(s) 140
BsaJI CCNNGG 2 cut(s) 36, 285
BsaXI ACNNNNNCTCC 2 cut(s) 113, 143
Bsc4I CCNNNNNNNGG 2 cut(s) 37, 69
Bse1I ACTGG 2 cut(s) 86, 165
BseBI CCWGG 1 cut(s) 119
BseDI CCNNGG 2 cut(s) 36, 285
BseLI CCNNNNNNNGG 2 cut(s) 37, 69
BseMII CTCAG 1 cut(s) 221
BseNI ACTGG 2 cut(s) 86, 165
BseRI GAGGAG 1 cut(s) 191
BseSI GKGCMC 1 cut(s) 117
Bsh1236I CGCG 1 cut(s) 89
BshFI GGCC 1 cut(s) 239
BshNI GGYRCC 1 cut(s) 114
BslFI GGGAC 1 cut(s) 86
BslI CCNNNNNNNGG 2 cut(s) 37, 69
BsmFI GGGAC 1 cut(s) 86
BsmI GAATGC 1 cut(s) 286
BsnI GGCC 1 cut(s) 239
Bsp1286I GDGCHC 1 cut(s) 117
BspACI CCGC 2 cut(s) 77, 266
BspANI GGCC 1 cut(s) 239
BspCNI CTCAG 1 cut(s) 222
BspFNI CGCG 1 cut(s) 89
BspLI GGNNCC 3 cut(s) 74, 75, 116
BspQI GCTCTTC 1 cut(s) 14
BspT107I GGYRCC 1 cut(s) 114
BsrI ACTGG 2 cut(s) 86, 165
BssECI CCNNGG 2 cut(s) 36, 285
BssT1I CCWWGG 1 cut(s) 285
Bst2UI CCWGG 1 cut(s) 119
Bst6I CTCTTC 3 cut(s) 14, 32, 59
BstDEI CTNAG 1 cut(s) 230
BstDSI CCRYGG 1 cut(s) 36
BstFNI CGCG 1 cut(s) 89
BstH2I RGCGCY 1 cut(s) 230
BstHHI GCGC 1 cut(s) 229
BstNI CCWGG 1 cut(s) 119
BstSCI CCNGG 1 cut(s) 117
BstSLI GKGCMC 1 cut(s) 117
BstUI CGCG 1 cut(s) 89
BstV2I GAAGAC 1 cut(s) 312
BsuRI GGCC 1 cut(s) 239
BtgI CCRYGG 1 cut(s) 36
BtsIMutI CAGTG 1 cut(s) 79
CfoI GCGC 1 cut(s) 229
Cfr13I GGNCC 2 cut(s) 73, 237
CviJI RGCY 3 cut(s) 41, 181, 239
CviKI_1 RGCY 3 cut(s) 41, 181, 239
DdeI CTNAG 1 cut(s) 230
Eam1104I CTCTTC 3 cut(s) 14, 32, 59
EarI CTCTTC 3 cut(s) 14, 32, 59
Eco130I CCWWGG 1 cut(s) 285
Eco47I GGWCC 1 cut(s) 73
Eco47III AGCGCT 1 cut(s) 228
Eco57I CTGAAG 1 cut(s) 40
EcoO109I RGGNCCY 1 cut(s) 73
EcoRII CCWGG 1 cut(s) 117
EcoT14I CCWWGG 1 cut(s) 285
ErhI CCWWGG 1 cut(s) 285
FaiI YATR 1 cut(s) 95
FaqI GGGAC 1 cut(s) 86
FauI CCCGC 1 cut(s) 84
GlaI GCGC 1 cut(s) 228
GsuI CTGGAG 1 cut(s) 140
HaeII RGCGCY 1 cut(s) 230
HaeIII GGCC 1 cut(s) 239
HhaI GCGC 1 cut(s) 229
Hin6I GCGC 1 cut(s) 227
HinP1I GCGC 1 cut(s) 227
HinfI GANTC 2 cut(s) 252, 298
HphI GGTGA 2 cut(s) 37, 280
HpyAV CCTTC 3 cut(s) 59, 208, 228
HpyCH4V TGCA 2 cut(s) 133, 171
HpyF3I CTNAG 1 cut(s) 230
HspAI GCGC 1 cut(s) 227
KflI GGGWCCC 1 cut(s) 73
LguI GCTCTTC 1 cut(s) 14
LmnI GCTCC 1 cut(s) 178
LpnPI CCDG 4 cut(s) 67, 104, 131, 146
MboII GAAGA 8 cut(s) 7, 10, 13, 19, 46, 199, 301, 312
MhlI GDGCHC 1 cut(s) 117
MlyI GAGTC 1 cut(s) 261
MnlI CCTC 6 cut(s) 35, 102, 139, 169, 211, 264
MspR9I CCNGG 1 cut(s) 119
Mva1269I GAATGC 1 cut(s) 286
MvaI CCWGG 1 cut(s) 119
MvnI CGCG 1 cut(s) 89
NlaIV GGNNCC 3 cut(s) 74, 75, 116
PciSI GCTCTTC 1 cut(s) 14
PctI GAATGC 1 cut(s) 286
PfeI GAWTC 1 cut(s) 298
PleI GAGTC 1 cut(s) 260
PpsI GAGTC 1 cut(s) 260
PpuMI RGGWCCY 1 cut(s) 73
Psp5II RGGWCCY 1 cut(s) 73
Psp6I CCWGG 1 cut(s) 117
PspGI CCWGG 1 cut(s) 117
PspN4I GGNNCC 3 cut(s) 74, 75, 116
PspPI GGNCC 2 cut(s) 73, 237
PspPPI RGGWCCY 1 cut(s) 73
SapI GCTCTTC 1 cut(s) 14
Sau96I GGNCC 2 cut(s) 73, 237
SchI GAGTC 1 cut(s) 261
ScrFI CCNGG 1 cut(s) 119
SduI GDGCHC 1 cut(s) 117
SetI ASST 4 cut(s) 120, 159, 183, 222
SinI GGWCC 1 cut(s) 73
SsiI CCGC 2 cut(s) 77, 266
StyD4I CCNGG 1 cut(s) 117
StyI CCWWGG 1 cut(s) 285
TaqI TCGA 3 cut(s) 204, 222, 255
TfiI GAWTC 1 cut(s) 298
TscAI CASTG 1 cut(s) 86
TspDTI ATGAA 1 cut(s) 301
TspGWI ACGGA 1 cut(s) 121
TspRI CASTG 1 cut(s) 86
VpaK11BI GGWCC 1 cut(s) 73
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.