FvH4_3g15460

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0012212
Physical Location & Seq
Reverse (-)
9670061 .. 9671241
1181 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g15460.t1

Sequence Viewer

Length: 606 bp
ATGGCCGACGAGACCAACCAAGCAATCATGGAGCCGAGAATCGCTCACCCACTTCACCAAATAGCGTCGACACCAAGCCACAAGCTCCTCCTGAAGCAATGGCTCAAAGAAGAGGAGCTAATCCTCAACCGGCTCTCCCTCAAAGAAACCCAAATCGATTCCGTCCGCAAAGAAATCACAACCCTCTTCATTTTCTTCTTCCTCTTCCACTCCATCTCCCTCATCCTCCTCTTCAACTCCTCCTCCACTGATCGACACGCCCTCGCTTGCCGCCGCTCTTGGATCCCCTCGCTCTGTTCTCTCTGCTTCTCTCTCGGGATCATCTGGGCAATTCGGTACAAGACCGACACCGAGGGGCATCTGGAGAAGCTGATGGAAAGGGAGAAGGAGGACCGGAAGCTTCTCGGGAAGTGTATCGAGGAGTTGAAGAAGAAGGGGCTGGAGTTTGATCTGTTGAAGGAGGTGGATGCGCTTAGGAGGGCCAAGAGTATGAGGGTGGATGCCAAAGTGGTGAAAAAGTGGTCTGCTAGGGACTTTGTGACTCTGTTTTTCTTTGCTGTTTCTTGCTTTGTGCTTGCTATTACAAGGGTTATCTTGTGCAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

202

Amino Acids

23.41

Weight (kDa)

9.17

Isoelectric Point (pI)

32.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012212)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12870
fragaria_vesca FvH4_3g15460
malus_domestica MD01G1075700.v1.1 MD05G1223200.v1.1 MD10G1204600.v1.1 MD12G1131000.v1.1
prunus_persica Prupe.4G137100_v2.0.a1
pyrus_communis pycom05g20560 pycom10g17530
rosa_chinensis RchiOBHm_Chr5g0025961
rosa_laevigata RLG00000032887
rosa_multiflora Rmu_sc0003020.1_g000010
rosa_roxburghii Rroxscaffold_1G00053280
rosa_rugosa Rorug05G0089900
rosa_samantha Rh5AG181700 Rh5BG179800 Rh5CG198200 Rh5DG180700
rosa_wichuraiana Rw5G016530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 276
AccI GTMKAC 1 cut(s) 68
AciI CCGC 3 cut(s) 166, 271, 274
AclWI GGATC 3 cut(s) 277, 290, 326
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 113
AfaI GTAC 1 cut(s) 338
AgsI TTSAA 3 cut(s) 235, 427, 457
AluBI AGCT 4 cut(s) 85, 118, 370, 400
AluI AGCT 4 cut(s) 85, 118, 370, 400
Alw26I GTCTC 1 cut(s) 5
AlwI GGATC 3 cut(s) 277, 290, 326
Ama87I CYCGRG 2 cut(s) 314, 404
AoxI GGCC 2 cut(s) 3, 480
AspLEI GCGC 1 cut(s) 472
AspS9I GGNCC 2 cut(s) 391, 480
AsuHPI GGTGA 3 cut(s) 38, 47, 523
AvaI CYCGRG 2 cut(s) 314, 404
AvaII GGWCC 1 cut(s) 391
BamHI GGATCC 1 cut(s) 282
BccI CCATC 2 cut(s) 221, 367
BcoDI GTCTC 1 cut(s) 5
BfaI CTAG 1 cut(s) 528
BisI GCNGC 2 cut(s) 271, 274
BlsI GCNGC 2 cut(s) 272, 275
Bme18I GGWCC 1 cut(s) 391
BmeT110I CYCGRG 2 cut(s) 314, 404
BmgT120I GGNCC 2 cut(s) 391, 480
BmiI GGNNCC 2 cut(s) 33, 284
BmsI GCATC 3 cut(s) 367, 457, 490
BplI GAGNNNNNCTC 2 cut(s) 28, 60
BpmI CTGGAG 2 cut(s) 383, 461
Bpu10I CCTNAGC 1 cut(s) 473
Bsa29I ATCGAT 1 cut(s) 156
BsaI GGTCTC 1 cut(s) 5
BsaJI CCNNGG 1 cut(s) 351
BsaWI WCCGGW 1 cut(s) 393
BsaXI ACNNNNNCTCC 6 cut(s) 119, 149, 200, 227, 230, 257
Bse118I RCCGGY 1 cut(s) 129
Bse3DI GCAATG 1 cut(s) 104
BseCI ATCGAT 1 cut(s) 156
BseDI CCNNGG 1 cut(s) 351
BseGI GGATG 3 cut(s) 222, 472, 505
BseMI GCAATG 1 cut(s) 104
BseRI GAGGAG 6 cut(s) 77, 128, 218, 229, 232, 434
BshFI GGCC 2 cut(s) 5, 482
BshVI ATCGAT 1 cut(s) 156
BsiHKCI CYCGRG 2 cut(s) 314, 404
BsiSI CCGG 2 cut(s) 130, 394
BslFI GGGAC 1 cut(s) 545
BsmAI GTCTC 1 cut(s) 5
BsmFI GGGAC 1 cut(s) 545
BsnI GGCC 2 cut(s) 5, 482
Bso31I GGTCTC 1 cut(s) 5
BsoBI CYCGRG 2 cut(s) 314, 404
Bsp143I GATC 4 cut(s) 250, 282, 318, 448
BspACI CCGC 3 cut(s) 166, 271, 274
BspANI GGCC 2 cut(s) 5, 482
BspDI ATCGAT 1 cut(s) 156
BspLI GGNNCC 2 cut(s) 33, 284
BspPI GGATC 3 cut(s) 277, 290, 326
BspTNI GGTCTC 1 cut(s) 5
BsrBI CCGCTC 1 cut(s) 276
BsrDI GCAATG 1 cut(s) 104
BsrFI RCCGGY 1 cut(s) 129
BssAI RCCGGY 1 cut(s) 129
BssECI CCNNGG 1 cut(s) 351
BssMI GATC 4 cut(s) 250, 282, 318, 448
Bst6I CTCTTC 4 cut(s) 105, 191, 209, 236
BstC8I GCNNGC 2 cut(s) 268, 576
BstDEI CTNAG 1 cut(s) 473
BstF5I GGATG 3 cut(s) 222, 472, 505
BstHHI GCGC 1 cut(s) 472
BstKTI GATC 4 cut(s) 253, 285, 321, 451
BstMAI GTCTC 1 cut(s) 5
BstMBI GATC 4 cut(s) 250, 282, 318, 448
BstX2I RGATCY 1 cut(s) 282
BstYI RGATCY 1 cut(s) 282
Bsu15I ATCGAT 1 cut(s) 156
BsuRI GGCC 2 cut(s) 5, 482
BsuTUI ATCGAT 1 cut(s) 156
BtsCI GGATG 3 cut(s) 222, 472, 505
BtsIMutI CAGTG 1 cut(s) 246
Cac8I GCNNGC 2 cut(s) 268, 576
CfoI GCGC 1 cut(s) 472
Cfr10I RCCGGY 1 cut(s) 129
Cfr13I GGNCC 2 cut(s) 391, 480
ClaI ATCGAT 1 cut(s) 156
CseI GACGC 1 cut(s) 54
Csp6I GTAC 1 cut(s) 337
CviAII CATG 1 cut(s) 28
CviQI GTAC 1 cut(s) 337
DdeI CTNAG 1 cut(s) 473
DpnI GATC 4 cut(s) 252, 284, 320, 450
DpnII GATC 4 cut(s) 250, 282, 318, 448
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 4 cut(s) 105, 191, 209, 236
EarI CTCTTC 4 cut(s) 105, 191, 209, 236
Eco31I GGTCTC 1 cut(s) 5
Eco47I GGWCC 1 cut(s) 391
Eco57I CTGAAG 1 cut(s) 113
Eco88I CYCGRG 2 cut(s) 314, 404
FaeI CATG 1 cut(s) 31
FaiI YATR 2 cut(s) 29, 491
FaqI GGGAC 1 cut(s) 545
FatI CATG 1 cut(s) 27
FblI GTMKAC 1 cut(s) 68
Fnu4HI GCNGC 2 cut(s) 271, 274
FokI GGATG 3 cut(s) 209, 479, 512
Fsp4HI GCNGC 2 cut(s) 271, 274
FspBI CTAG 1 cut(s) 528
GlaI GCGC 1 cut(s) 471
GluI GCNGC 2 cut(s) 271, 274
GsuI CTGGAG 2 cut(s) 383, 461
HaeIII GGCC 2 cut(s) 5, 482
HapII CCGG 2 cut(s) 130, 394
HgaI GACGC 1 cut(s) 54
HhaI GCGC 1 cut(s) 472
Hin1II CATG 1 cut(s) 31
Hin6I GCGC 1 cut(s) 470
HinP1I GCGC 1 cut(s) 470
HincII GTYRAC 1 cut(s) 69
HindII GTYRAC 1 cut(s) 69
HindIII AAGCTT 1 cut(s) 398
HinfI GANTC 3 cut(s) 39, 158, 541
HpaII CCGG 2 cut(s) 130, 394
HphI GGTGA 3 cut(s) 38, 47, 523
Hpy166II GTNNAC 1 cut(s) 69
Hpy188III TCNNGA 4 cut(s) 91, 316, 362, 406
Hpy8I GTNNAC 1 cut(s) 69
Hpy99I CGWCG 2 cut(s) 11, 70
HpyAV CCTTC 3 cut(s) 379, 427, 451
HpyCH4V TGCA 1 cut(s) 600
HpyF3I CTNAG 1 cut(s) 473
Hsp92II CATG 1 cut(s) 31
HspAI GCGC 1 cut(s) 470
Kzo9I GATC 4 cut(s) 250, 282, 318, 448
LmnI GCTCC 3 cut(s) 31, 90, 115
LpnPI CCDG 6 cut(s) 104, 143, 310, 347, 407, 425
LweI GCATC 3 cut(s) 367, 457, 490
MaeI CTAG 1 cut(s) 528
MaeIII GTNAC 1 cut(s) 538
MalI GATC 4 cut(s) 252, 284, 320, 450
MbiI CCGCTC 1 cut(s) 276
MboI GATC 4 cut(s) 250, 282, 318, 448
MboII GAAGA 8 cut(s) 122, 178, 187, 190, 196, 223, 439, 442
MflI RGATCY 1 cut(s) 282
MluCI AATT 2 cut(s) 330, 601
MlyI GAGTC 1 cut(s) 535
MspI CCGG 2 cut(s) 130, 394
NdeII GATC 4 cut(s) 250, 282, 318, 448
NlaIII CATG 1 cut(s) 31
NlaIV GGNNCC 2 cut(s) 33, 284
NmeAIII GCCGAG 1 cut(s) 60
NmuCI GTSAC 1 cut(s) 538
PfeI GAWTC 2 cut(s) 39, 158
PkrI GCNGC 2 cut(s) 272, 275
PleI GAGTC 1 cut(s) 535
PpsI GAGTC 1 cut(s) 535
PspN4I GGNNCC 2 cut(s) 33, 284
PspPI GGNCC 2 cut(s) 391, 480
PsuI RGATCY 1 cut(s) 282
RsaI GTAC 1 cut(s) 338
RsaNI GTAC 1 cut(s) 337
SalI GTCGAC 1 cut(s) 67
SatI GCNGC 2 cut(s) 271, 274
Sau3AI GATC 4 cut(s) 250, 282, 318, 448
Sau96I GGNCC 2 cut(s) 391, 480
SchI GAGTC 1 cut(s) 535
SetI ASST 5 cut(s) 87, 120, 372, 402, 465
SfaNI GCATC 3 cut(s) 367, 457, 490
SinI GGWCC 1 cut(s) 391
Sse9I AATT 2 cut(s) 330, 601
SsiI CCGC 3 cut(s) 166, 271, 274
SspMI CTAG 1 cut(s) 528
TaqI TCGA 4 cut(s) 68, 156, 253, 417
TaqII GACCGA 1 cut(s) 359
TasI AATT 2 cut(s) 330, 601
TauI GCSGC 2 cut(s) 273, 276
TfiI GAWTC 2 cut(s) 39, 158
TscAI CASTG 1 cut(s) 253
TseFI GTSAC 1 cut(s) 538
Tsp45I GTSAC 1 cut(s) 538
TspDTI ATGAA 1 cut(s) 178
TspGWI ACGGA 1 cut(s) 151
TspRI CASTG 1 cut(s) 253
VpaK11BI GGWCC 1 cut(s) 391
XmiI GTMKAC 1 cut(s) 68
XspI CTAG 1 cut(s) 528
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.