MD01G1075700.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0012212
Physical Location & Seq
Forward (+)
18172823 .. 18173215
393 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1075700.v1.1.491

Sequence Viewer

Length: 324 bp
ATGCTCTTCATCTTCTTCTTCCTCTTCCATTCCACAGCTTTCACTCTTCTCTTCAGTTCCTCGTCGCAGGACCCGCACGAGTTCACGTGCCGCAGCGACACGGAGGGGCACCTGGAGAAGTTGTTGGAGAGAGAAAATGAGGATAAGAACTTGCTGGAAAAGTGTATTGAGGAGCTGAAGAAGAAGGGGTTGGAGTTCGATTTGTTGAAGGAGGTCGACGCGTTGAGGAGGGCCAAGAGTTTGAGAGTCGAAGTGAAGACGGTGAGGAAGTGGAATGCGAGGGATTTTGCGACTCTGTTTTTCTTCATTGTGTCTTTCTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

12.7

Weight (kDa)

6.3

Isoelectric Point (pI)

36.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012212)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12870
fragaria_vesca FvH4_3g15460
malus_domestica MD01G1075700.v1.1 MD05G1223200.v1.1 MD10G1204600.v1.1 MD12G1131000.v1.1
prunus_persica Prupe.4G137100_v2.0.a1
pyrus_communis pycom05g20560 pycom10g17530
rosa_chinensis RchiOBHm_Chr5g0025961
rosa_laevigata RLG00000032887
rosa_multiflora Rmu_sc0003020.1_g000010
rosa_roxburghii Rroxscaffold_1G00053280
rosa_rugosa Rorug05G0089900
rosa_samantha Rh5AG181700 Rh5BG179800 Rh5CG198200 Rh5DG180700
rosa_wichuraiana Rw5G016530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 108
AccI GTMKAC 1 cut(s) 216
AccII CGCG 1 cut(s) 221
AciI CCGC 2 cut(s) 74, 91
AcuI CTGAAG 2 cut(s) 37, 197
AcvI CACGTG 1 cut(s) 87
AflIII ACRYGT 1 cut(s) 219
AgsI TTSAA 1 cut(s) 208
AjnI CCWGG 1 cut(s) 111
AjuI GAANNNNNNNTTGG 2 cut(s) 173, 205
AluBI AGCT 2 cut(s) 38, 175
AluI AGCT 2 cut(s) 38, 175
AoxI GGCC 1 cut(s) 231
ApeKI GCWGC 1 cut(s) 93
AspS9I GGNCC 2 cut(s) 70, 231
AsuHPI GGTGA 1 cut(s) 274
AvaII GGWCC 1 cut(s) 70
BaeGI GKGCMC 1 cut(s) 111
BanI GGYRCC 1 cut(s) 108
BauI CACGAG 1 cut(s) 77
BbrPI CACGTG 1 cut(s) 87
BbsI GAAGAC 1 cut(s) 263
BbvI GCAGC 1 cut(s) 105
BciT130I CCWGG 1 cut(s) 113
BisI GCNGC 2 cut(s) 91, 94
BlsI GCNGC 2 cut(s) 92, 95
Bme1390I CCNGG 1 cut(s) 113
Bme18I GGWCC 1 cut(s) 70
BmgT120I GGNCC 2 cut(s) 70, 231
BmiI GGNNCC 2 cut(s) 72, 110
BmrFI CCNGG 1 cut(s) 113
BpiI GAAGAC 1 cut(s) 263
BpmI CTGGAG 1 cut(s) 134
BsaAI YACGTR 1 cut(s) 87
BsaXI ACNNNNNCTCC 2 cut(s) 107, 137
BseBI CCWGG 1 cut(s) 113
BseRI GAGGAG 2 cut(s) 185, 241
BseSI GKGCMC 1 cut(s) 111
BseXI GCAGC 1 cut(s) 105
Bsh1236I CGCG 1 cut(s) 221
BshFI GGCC 1 cut(s) 233
BshNI GGYRCC 1 cut(s) 108
BsmI GAATGC 1 cut(s) 280
BsnI GGCC 1 cut(s) 233
Bsp1286I GDGCHC 1 cut(s) 111
BspACI CCGC 2 cut(s) 74, 91
BspANI GGCC 1 cut(s) 233
BspFNI CGCG 1 cut(s) 221
BspLI GGNNCC 2 cut(s) 72, 110
BspQI GCTCTTC 1 cut(s) 11
BspT107I GGYRCC 1 cut(s) 108
BssSI CACGAG 1 cut(s) 77
Bst2BI CACGAG 1 cut(s) 77
Bst2UI CCWGG 1 cut(s) 113
Bst4CI ACNGT 1 cut(s) 262
Bst6I CTCTTC 4 cut(s) 11, 29, 51, 56
BstBAI YACGTR 1 cut(s) 87
BstFNI CGCG 1 cut(s) 221
BstMWI GCNNNNNNNGC 1 cut(s) 73
BstNI CCWGG 1 cut(s) 113
BstSCI CCNGG 1 cut(s) 111
BstSLI GKGCMC 1 cut(s) 111
BstUI CGCG 1 cut(s) 221
BstV1I GCAGC 1 cut(s) 105
BstV2I GAAGAC 1 cut(s) 263
BsuRI GGCC 1 cut(s) 233
Cfr13I GGNCC 2 cut(s) 70, 231
CseI GACGC 1 cut(s) 227
CviJI RGCY 3 cut(s) 38, 175, 233
CviKI_1 RGCY 3 cut(s) 38, 175, 233
Eam1104I CTCTTC 4 cut(s) 11, 29, 51, 56
EarI CTCTTC 4 cut(s) 11, 29, 51, 56
Eco47I GGWCC 1 cut(s) 70
Eco57I CTGAAG 2 cut(s) 37, 197
Eco72I CACGTG 1 cut(s) 87
EcoO109I RGGNCCY 1 cut(s) 70
EcoRII CCWGG 1 cut(s) 111
FauI CCCGC 1 cut(s) 81
FblI GTMKAC 1 cut(s) 216
Fnu4HI GCNGC 2 cut(s) 91, 94
Fsp4HI GCNGC 2 cut(s) 91, 94
GluI GCNGC 2 cut(s) 91, 94
GsuI CTGGAG 1 cut(s) 134
HaeIII GGCC 1 cut(s) 233
HgaI GACGC 1 cut(s) 227
HincII GTYRAC 1 cut(s) 217
HindII GTYRAC 1 cut(s) 217
HinfI GANTC 2 cut(s) 246, 292
HphI GGTGA 1 cut(s) 274
Hpy166II GTNNAC 2 cut(s) 84, 217
Hpy8I GTNNAC 2 cut(s) 84, 217
Hpy99I CGWCG 2 cut(s) 67, 221
HpyAV CCTTC 2 cut(s) 178, 202
HpyCH4III ACNGT 1 cut(s) 262
HpyCH4IV ACGT 1 cut(s) 86
HpyF10VI GCNNNNNNNGC 1 cut(s) 73
HpySE526I ACGT 1 cut(s) 86
LguI GCTCTTC 1 cut(s) 11
LmnI GCTCC 1 cut(s) 172
LpnPI CCDG 4 cut(s) 53, 98, 125, 140
Lsp1109I GCAGC 1 cut(s) 105
MaeII ACGT 1 cut(s) 86
MhlI GDGCHC 1 cut(s) 111
MluI ACGCGT 1 cut(s) 219
MlyI GAGTC 2 cut(s) 255, 286
MmeI TCCRAC 2 cut(s) 105, 171
MspR9I CCNGG 1 cut(s) 113
Mva1269I GAATGC 1 cut(s) 280
MvaI CCWGG 1 cut(s) 113
MvnI CGCG 1 cut(s) 221
MwoI GCNNNNNNNGC 1 cut(s) 73
NlaIV GGNNCC 2 cut(s) 72, 110
PciSI GCTCTTC 1 cut(s) 11
PctI GAATGC 1 cut(s) 280
PkrI GCNGC 2 cut(s) 92, 95
PleI GAGTC 2 cut(s) 254, 286
PmaCI CACGTG 1 cut(s) 87
PmlI CACGTG 1 cut(s) 87
PpsI GAGTC 2 cut(s) 254, 286
Ppu21I YACGTR 1 cut(s) 87
PpuMI RGGWCCY 1 cut(s) 70
Psp5II RGGWCCY 1 cut(s) 70
Psp6I CCWGG 1 cut(s) 111
PspCI CACGTG 1 cut(s) 87
PspGI CCWGG 1 cut(s) 111
PspN4I GGNNCC 2 cut(s) 72, 110
PspPI GGNCC 2 cut(s) 70, 231
PspPPI RGGWCCY 1 cut(s) 70
SalI GTCGAC 1 cut(s) 215
SapI GCTCTTC 1 cut(s) 11
SatI GCNGC 2 cut(s) 91, 94
Sau96I GGNCC 2 cut(s) 70, 231
SchI GAGTC 2 cut(s) 255, 286
ScrFI CCNGG 1 cut(s) 113
SduI GDGCHC 1 cut(s) 111
SetI ASST 5 cut(s) 40, 89, 114, 177, 216
SinI GGWCC 1 cut(s) 70
SsiI CCGC 2 cut(s) 74, 91
StyD4I CCNGG 1 cut(s) 111
TaaI ACNGT 1 cut(s) 262
TaiI ACGT 1 cut(s) 89
TaqI TCGA 3 cut(s) 198, 216, 249
TauI GCSGC 1 cut(s) 93
TseI GCWGC 1 cut(s) 93
TspDTI ATGAA 1 cut(s) 295
TspGWI ACGGA 1 cut(s) 116
VpaK11BI GGWCC 1 cut(s) 70
XmiI GTMKAC 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.