Rroxscaffold_1G00053280

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0012212
Physical Location & Seq
Forward (+)
74105795 .. 74106762
968 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00053280.1

Sequence Viewer

Length: 678 bp
ATGGCCGACGAGACGGCAAACCAAGCAATCATGGAGCCGAAAATCGCTCACCCACTTCACCAAATCGCCTCCACACCCAGCCACAAGCTCCTCCTCAAGCAATGGCTCAAAGAAGAGGAGCTAATCCTCAACCGCCTCTCCCTCAAGGAAACCCAAATCGACTCGGTCCGCAAAGAAATCACGACCCTCTTCATCTTCTTCTTCCTCTTCCACTCCATTTCCCTCATACTTCTCTTCAACTCCTCCTCCACTGATCGACACGCGCTTGCTTGCCGCCGATCTTGGATCCCCTCGCTCTGTTCTCTCTGTTTCTCTCTGGGGATCATTTGGGCGATACGGTACAAGACCGACATGGAGGGGCACCTGGAGAAGCTGATGGAGCGGGAGAAGGAGGACCGGAAGCTTCTCGGGAAGTGTATAGAGGAGTTGAAGAAGAAGGGGCTGGAGTTTGATCTGTTGAAGGAGGTGGATGCGCTCAGGAGGGCCAAGAGTATGAGGGTTGAGGCCAAAGTTGTGAAGAAATGGTCTGCTAGGGACTTTGTTACTCTTTTTTTCTTTGCTGTTTCTTGCTTTGTGCTTGCTATTACAAGGGTTATCTTGCCCAAGGGCCACGGAAATTGGATTAGTCTAGTTGATCTAATAGATGAAGTCCTGGATTTGGACATACATTTGGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

225

Amino Acids

26.03

Weight (kDa)

8.55

Isoelectric Point (pI)

30.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012212)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12870
fragaria_vesca FvH4_3g15460
malus_domestica MD01G1075700.v1.1 MD05G1223200.v1.1 MD10G1204600.v1.1 MD12G1131000.v1.1
prunus_persica Prupe.4G137100_v2.0.a1
pyrus_communis pycom05g20560 pycom10g17530
rosa_chinensis RchiOBHm_Chr5g0025961
rosa_laevigata RLG00000032887
rosa_multiflora Rmu_sc0003020.1_g000010
rosa_roxburghii Rroxscaffold_1G00053280
rosa_rugosa Rorug05G0089900
rosa_samantha Rh5AG181700 Rh5BG179800 Rh5CG198200 Rh5DG180700
rosa_wichuraiana Rw5G016530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 360
AccBSI CCGCTC 1 cut(s) 382
AccII CGCG 1 cut(s) 263
AciI CCGC 4 cut(s) 133, 169, 274, 382
AclWI GGATC 3 cut(s) 280, 293, 329
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 1 cut(s) 341
AfiI CCNNNNNNNGG 1 cut(s) 658
AgsI TTSAA 3 cut(s) 238, 430, 460
AjnI CCWGG 2 cut(s) 363, 651
AluBI AGCT 4 cut(s) 88, 121, 373, 403
AluI AGCT 4 cut(s) 88, 121, 373, 403
Alw26I GTCTC 1 cut(s) 5
AlwI GGATC 3 cut(s) 280, 293, 329
Ama87I CYCGRG 1 cut(s) 407
AoxI GGCC 4 cut(s) 3, 483, 504, 607
AspLEI GCGC 2 cut(s) 265, 475
AspS9I GGNCC 4 cut(s) 166, 394, 483, 607
AsuHPI GGTGA 2 cut(s) 41, 50
AvaI CYCGRG 1 cut(s) 407
AvaII GGWCC 2 cut(s) 166, 394
BaeGI GKGCMC 1 cut(s) 363
BamHI GGATCC 1 cut(s) 285
BanI GGYRCC 1 cut(s) 360
BccI CCATC 1 cut(s) 370
BceAI ACGGC 1 cut(s) 30
BciT130I CCWGG 2 cut(s) 365, 653
BcoDI GTCTC 1 cut(s) 5
BfaI CTAG 2 cut(s) 531, 629
BisI GCNGC 1 cut(s) 274
BlsI GCNGC 1 cut(s) 275
Bme1390I CCNGG 2 cut(s) 365, 653
Bme18I GGWCC 2 cut(s) 166, 394
BmeT110I CYCGRG 1 cut(s) 407
BmgT120I GGNCC 4 cut(s) 166, 394, 483, 607
BmiI GGNNCC 3 cut(s) 36, 287, 362
BmrFI CCNGG 2 cut(s) 365, 653
BmsI GCATC 1 cut(s) 460
BpmI CTGGAG 2 cut(s) 386, 464
Bpu10I CCTNAGC 1 cut(s) 476
BpuEI CTTGAG 2 cut(s) 80, 128
BsaJI CCNNGG 2 cut(s) 603, 610
BsaWI WCCGGW 1 cut(s) 396
BsaXI ACNNNNNCTCC 4 cut(s) 122, 152, 230, 260
Bsc4I CCNNNNNNNGG 1 cut(s) 658
Bse3DI GCAATG 1 cut(s) 107
BseBI CCWGG 2 cut(s) 365, 653
BseDI CCNNGG 2 cut(s) 603, 610
BseGI GGATG 1 cut(s) 475
BseLI CCNNNNNNNGG 1 cut(s) 658
BseMI GCAATG 1 cut(s) 107
BseMII CTCAG 1 cut(s) 490
BseRI GAGGAG 6 cut(s) 80, 83, 131, 232, 235, 437
BseSI GKGCMC 1 cut(s) 363
BseYI CCCAGC 1 cut(s) 77
Bsh1236I CGCG 1 cut(s) 263
BshFI GGCC 4 cut(s) 5, 485, 506, 609
BshNI GGYRCC 1 cut(s) 360
BsiHKCI CYCGRG 1 cut(s) 407
BsiSI CCGG 1 cut(s) 397
BslFI GGGAC 1 cut(s) 548
BslI CCNNNNNNNGG 1 cut(s) 658
BsmAI GTCTC 1 cut(s) 5
BsmBI CGTCTC 1 cut(s) 5
BsmFI GGGAC 1 cut(s) 548
BsnI GGCC 4 cut(s) 5, 485, 506, 609
BsoBI CYCGRG 1 cut(s) 407
Bsp1286I GDGCHC 1 cut(s) 363
Bsp143I GATC 6 cut(s) 253, 278, 285, 321, 451, 634
BspACI CCGC 4 cut(s) 133, 169, 274, 382
BspANI GGCC 4 cut(s) 5, 485, 506, 609
BspCNI CTCAG 1 cut(s) 489
BspFNI CGCG 1 cut(s) 263
BspLI GGNNCC 3 cut(s) 36, 287, 362
BspPI GGATC 3 cut(s) 280, 293, 329
BspT107I GGYRCC 1 cut(s) 360
BsrBI CCGCTC 1 cut(s) 382
BsrDI GCAATG 1 cut(s) 107
BssECI CCNNGG 2 cut(s) 603, 610
BssMI GATC 6 cut(s) 253, 278, 285, 321, 451, 634
BssT1I CCWWGG 1 cut(s) 603
Bst2UI CCWGG 2 cut(s) 365, 653
Bst4CI ACNGT 1 cut(s) 339
Bst6I CTCTTC 4 cut(s) 108, 194, 212, 239
BstC8I GCNNGC 3 cut(s) 267, 271, 579
BstDEI CTNAG 1 cut(s) 476
BstDSI CCRYGG 1 cut(s) 610
BstF5I GGATG 1 cut(s) 475
BstFNI CGCG 1 cut(s) 263
BstHHI GCGC 2 cut(s) 265, 475
BstKTI GATC 6 cut(s) 256, 281, 288, 324, 454, 637
BstMAI GTCTC 1 cut(s) 5
BstMBI GATC 6 cut(s) 253, 278, 285, 321, 451, 634
BstMWI GCNNNNNNNGC 2 cut(s) 23, 379
BstNI CCWGG 2 cut(s) 365, 653
BstSCI CCNGG 2 cut(s) 363, 651
BstSLI GKGCMC 1 cut(s) 363
BstUI CGCG 1 cut(s) 263
BstX2I RGATCY 1 cut(s) 285
BstYI RGATCY 1 cut(s) 285
BsuRI GGCC 4 cut(s) 5, 485, 506, 609
BtgI CCRYGG 1 cut(s) 610
BtsCI GGATG 1 cut(s) 475
BtsIMutI CAGTG 1 cut(s) 249
Cac8I GCNNGC 3 cut(s) 267, 271, 579
CfoI GCGC 2 cut(s) 265, 475
Cfr13I GGNCC 4 cut(s) 166, 394, 483, 607
CpoI CGGWCCG 1 cut(s) 166
Csp6I GTAC 1 cut(s) 340
CspCI CAANNNNNGTGG 2 cut(s) 599, 634
CspI CGGWCCG 1 cut(s) 166
CviAII CATG 2 cut(s) 31, 352
CviQI GTAC 1 cut(s) 340
DdeI CTNAG 1 cut(s) 476
DpnI GATC 6 cut(s) 255, 280, 287, 323, 453, 636
DpnII GATC 6 cut(s) 253, 278, 285, 321, 451, 634
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 4 cut(s) 108, 194, 212, 239
EarI CTCTTC 4 cut(s) 108, 194, 212, 239
Eco130I CCWWGG 1 cut(s) 603
Eco47I GGWCC 2 cut(s) 166, 394
Eco88I CYCGRG 1 cut(s) 407
EcoRII CCWGG 2 cut(s) 363, 651
EcoT14I CCWWGG 1 cut(s) 603
ErhI CCWWGG 1 cut(s) 603
Esp3I CGTCTC 1 cut(s) 5
FaeI CATG 2 cut(s) 34, 355
FaiI YATR 6 cut(s) 32, 227, 353, 419, 494, 665
FaqI GGGAC 1 cut(s) 548
FatI CATG 2 cut(s) 30, 351
FauI CCCGC 1 cut(s) 375
Fnu4HI GCNGC 1 cut(s) 274
FokI GGATG 1 cut(s) 482
Fsp4HI GCNGC 1 cut(s) 274
FspBI CTAG 2 cut(s) 531, 629
GlaI GCGC 2 cut(s) 264, 474
GluI GCNGC 1 cut(s) 274
GsaI CCCAGC 1 cut(s) 81
GsuI CTGGAG 2 cut(s) 386, 464
HaeIII GGCC 4 cut(s) 5, 485, 506, 609
HapII CCGG 1 cut(s) 397
HhaI GCGC 2 cut(s) 265, 475
Hin1II CATG 2 cut(s) 34, 355
Hin6I GCGC 2 cut(s) 263, 473
HinP1I GCGC 2 cut(s) 263, 473
HindIII AAGCTT 1 cut(s) 401
HinfI GANTC 1 cut(s) 161
HpaII CCGG 1 cut(s) 397
HphI GGTGA 2 cut(s) 41, 50
Hpy188III TCNNGA 3 cut(s) 181, 409, 478
Hpy99I CGWCG 1 cut(s) 11
HpyAV CCTTC 3 cut(s) 382, 430, 454
HpyCH4III ACNGT 1 cut(s) 339
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 379
HpyF3I CTNAG 1 cut(s) 476
Hsp92II CATG 2 cut(s) 34, 355
HspAI GCGC 2 cut(s) 263, 473
Kzo9I GATC 6 cut(s) 253, 278, 285, 321, 451, 634
LmnI GCTCC 4 cut(s) 34, 93, 118, 379
LpnPI CCDG 9 cut(s) 91, 302, 350, 377, 410, 428, 463, 638, 665
LweI GCATC 1 cut(s) 460
MaeI CTAG 2 cut(s) 531, 629
MaeIII GTNAC 1 cut(s) 541
MalI GATC 6 cut(s) 255, 280, 287, 323, 453, 636
MbiI CCGCTC 1 cut(s) 382
MboI GATC 6 cut(s) 253, 278, 285, 321, 451, 634
MflI RGATCY 1 cut(s) 285
MhlI GDGCHC 1 cut(s) 363
MluCI AATT 1 cut(s) 616
MlyI GAGTC 1 cut(s) 155
MspI CCGG 1 cut(s) 397
MspR9I CCNGG 2 cut(s) 365, 653
MvaI CCWGG 2 cut(s) 365, 653
MvnI CGCG 1 cut(s) 263
MwoI GCNNNNNNNGC 2 cut(s) 23, 379
NdeII GATC 6 cut(s) 253, 278, 285, 321, 451, 634
NlaIII CATG 2 cut(s) 34, 355
NlaIV GGNNCC 3 cut(s) 36, 287, 362
PflFI GACNNNGTC 1 cut(s) 164
PfoI TCCNGGA 1 cut(s) 651
PkrI GCNGC 1 cut(s) 275
PleI GAGTC 1 cut(s) 155
PpsI GAGTC 1 cut(s) 155
Psp6I CCWGG 2 cut(s) 363, 651
PspFI CCCAGC 1 cut(s) 77
PspGI CCWGG 2 cut(s) 363, 651
PspN4I GGNNCC 3 cut(s) 36, 287, 362
PspPI GGNCC 4 cut(s) 166, 394, 483, 607
PsuI RGATCY 1 cut(s) 285
PsyI GACNNNGTC 1 cut(s) 164
RsaI GTAC 1 cut(s) 341
RsaNI GTAC 1 cut(s) 340
Rsr2I CGGWCCG 1 cut(s) 166
RsrII CGGWCCG 1 cut(s) 166
SatI GCNGC 1 cut(s) 274
Sau3AI GATC 6 cut(s) 253, 278, 285, 321, 451, 634
Sau96I GGNCC 4 cut(s) 166, 394, 483, 607
SchI GAGTC 1 cut(s) 155
ScrFI CCNGG 2 cut(s) 365, 653
SduI GDGCHC 1 cut(s) 363
SetI ASST 6 cut(s) 90, 123, 366, 375, 405, 468
SfaNI GCATC 1 cut(s) 460
SinI GGWCC 2 cut(s) 166, 394
SmlI CTYRAG 2 cut(s) 95, 143
SmoI CTYRAG 2 cut(s) 95, 143
Sse9I AATT 1 cut(s) 616
SsiI CCGC 4 cut(s) 133, 169, 274, 382
SspMI CTAG 2 cut(s) 531, 629
StyD4I CCNGG 2 cut(s) 363, 651
StyI CCWWGG 1 cut(s) 603
TaaI ACNGT 1 cut(s) 339
TaqI TCGA 2 cut(s) 159, 256
TaqII GACCGA 2 cut(s) 154, 362
TasI AATT 1 cut(s) 616
TauI GCSGC 1 cut(s) 276
TscAI CASTG 1 cut(s) 256
TspDTI ATGAA 2 cut(s) 181, 660
TspGWI ACGGA 1 cut(s) 627
TspRI CASTG 1 cut(s) 256
Tth111I GACNNNGTC 1 cut(s) 164
VpaK11BI GGWCC 2 cut(s) 166, 394
XspI CTAG 2 cut(s) 531, 629
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.