Rh5AG181700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0012212
Physical Location & Seq
Reverse (-)
20581958 .. 20583111
1154 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG181700.1

Sequence Viewer

Length: 609 bp
ATGGCCGACGAGACCGCAAACCAAGCAATCATGGAGCCGAAAATCGCTCACCCACTTCACCAAATCGCCTCCACACCAAGCCACAAGCTCCTCCTCAAGCAATGGCTCAAAGAAGAGGAGCTAATCCTCAACCGTCTCTCCCTCAAGGAAACCCAAATCGACTCGGTCCGCAAAGAAATCACGACCCTCTTCATCTTCTTCTTCCTCTTCCACTCCATTTCCCTCATTCTCCTCTTCAACTCCTCCTCCACTGATCGACACGCGCTTGCTTGCCGCCGATCTTGGATCCCCTCGCTCTGTTCTCTCTGTTTCTCTCTGGGGATCATTTGGGCGATACGGTACAAGACCGACATGGAGGGGCACCTGGAGAAGCTGATGGAGCGGGAGAAGGAGGACCGGAAGCTTCTAGGGAAGTGTATCGAGGAGTTGAAGAAGAAGGGGCTGGAGTTTGATCTGTTGAAGGAGGTGGATGCGCTTAGGAGGGCCAAGAGTATGAGGGTTGAGGCCAAAGTGGTGAAGAATGGGTCTGCTAGGGACTTTGTGACTCTGTTTTTCTTTGCTGTTTCTTGTTTTGTTCTTGCTATAACAAGGGTTATCTTGTGCAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

202

Amino Acids

23.36

Weight (kDa)

9.04

Isoelectric Point (pI)

33.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012212)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12870
fragaria_vesca FvH4_3g15460
malus_domestica MD01G1075700.v1.1 MD05G1223200.v1.1 MD10G1204600.v1.1 MD12G1131000.v1.1
prunus_persica Prupe.4G137100_v2.0.a1
pyrus_communis pycom05g20560 pycom10g17530
rosa_chinensis RchiOBHm_Chr5g0025961
rosa_laevigata RLG00000032887
rosa_multiflora Rmu_sc0003020.1_g000010
rosa_roxburghii Rroxscaffold_1G00053280
rosa_rugosa Rorug05G0089900
rosa_samantha Rh5AG181700 Rh5BG179800 Rh5CG198200 Rh5DG180700
rosa_wichuraiana Rw5G016530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 360
AccBSI CCGCTC 1 cut(s) 382
AccII CGCG 1 cut(s) 263
AciI CCGC 4 cut(s) 15, 169, 274, 382
AclWI GGATC 3 cut(s) 280, 293, 329
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 1 cut(s) 341
AgsI TTSAA 3 cut(s) 238, 430, 460
AjnI CCWGG 1 cut(s) 363
AluBI AGCT 4 cut(s) 88, 121, 373, 403
AluI AGCT 4 cut(s) 88, 121, 373, 403
Alw26I GTCTC 2 cut(s) 5, 140
AlwI GGATC 3 cut(s) 280, 293, 329
AoxI GGCC 3 cut(s) 3, 483, 504
AspLEI GCGC 2 cut(s) 265, 475
AspS9I GGNCC 3 cut(s) 166, 394, 483
AsuHPI GGTGA 3 cut(s) 41, 50, 526
AvaII GGWCC 2 cut(s) 166, 394
BaeGI GKGCMC 1 cut(s) 363
BamHI GGATCC 1 cut(s) 285
BanI GGYRCC 1 cut(s) 360
BccI CCATC 1 cut(s) 370
BciT130I CCWGG 1 cut(s) 365
BcoDI GTCTC 2 cut(s) 5, 140
BfaI CTAG 2 cut(s) 407, 531
BisI GCNGC 1 cut(s) 274
BlsI GCNGC 1 cut(s) 275
Bme1390I CCNGG 1 cut(s) 365
Bme18I GGWCC 2 cut(s) 166, 394
BmgT120I GGNCC 3 cut(s) 166, 394, 483
BmiI GGNNCC 3 cut(s) 36, 287, 362
BmrFI CCNGG 1 cut(s) 365
BmsI GCATC 1 cut(s) 460
BpmI CTGGAG 2 cut(s) 386, 464
Bpu10I CCTNAGC 1 cut(s) 476
BpuEI CTTGAG 2 cut(s) 80, 128
BsaI GGTCTC 1 cut(s) 5
BsaWI WCCGGW 1 cut(s) 396
BsaXI ACNNNNNCTCC 4 cut(s) 122, 152, 230, 260
Bse3DI GCAATG 1 cut(s) 107
BseBI CCWGG 1 cut(s) 365
BseGI GGATG 1 cut(s) 475
BseMI GCAATG 1 cut(s) 107
BseRI GAGGAG 7 cut(s) 80, 83, 131, 221, 232, 235, 437
BseSI GKGCMC 1 cut(s) 363
Bsh1236I CGCG 1 cut(s) 263
BshFI GGCC 3 cut(s) 5, 485, 506
BshNI GGYRCC 1 cut(s) 360
BsiSI CCGG 1 cut(s) 397
BslFI GGGAC 1 cut(s) 548
BsmAI GTCTC 2 cut(s) 5, 140
BsmBI CGTCTC 1 cut(s) 140
BsmFI GGGAC 1 cut(s) 548
BsnI GGCC 3 cut(s) 5, 485, 506
Bso31I GGTCTC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 363
Bsp143I GATC 5 cut(s) 253, 278, 285, 321, 451
BspACI CCGC 4 cut(s) 15, 169, 274, 382
BspANI GGCC 3 cut(s) 5, 485, 506
BspFNI CGCG 1 cut(s) 263
BspLI GGNNCC 3 cut(s) 36, 287, 362
BspPI GGATC 3 cut(s) 280, 293, 329
BspT107I GGYRCC 1 cut(s) 360
BspTNI GGTCTC 1 cut(s) 5
BsrBI CCGCTC 1 cut(s) 382
BsrDI GCAATG 1 cut(s) 107
BssMI GATC 5 cut(s) 253, 278, 285, 321, 451
Bst2UI CCWGG 1 cut(s) 365
Bst4CI ACNGT 2 cut(s) 134, 339
Bst6I CTCTTC 4 cut(s) 108, 194, 212, 239
BstC8I GCNNGC 2 cut(s) 267, 271
BstDEI CTNAG 1 cut(s) 476
BstF5I GGATG 1 cut(s) 475
BstFNI CGCG 1 cut(s) 263
BstHHI GCGC 2 cut(s) 265, 475
BstKTI GATC 5 cut(s) 256, 281, 288, 324, 454
BstMAI GTCTC 2 cut(s) 5, 140
BstMBI GATC 5 cut(s) 253, 278, 285, 321, 451
BstMWI GCNNNNNNNGC 2 cut(s) 23, 379
BstNI CCWGG 1 cut(s) 365
BstSCI CCNGG 1 cut(s) 363
BstSLI GKGCMC 1 cut(s) 363
BstUI CGCG 1 cut(s) 263
BstX2I RGATCY 1 cut(s) 285
BstYI RGATCY 1 cut(s) 285
BsuRI GGCC 3 cut(s) 5, 485, 506
BtsCI GGATG 1 cut(s) 475
BtsIMutI CAGTG 1 cut(s) 249
Cac8I GCNNGC 2 cut(s) 267, 271
CfoI GCGC 2 cut(s) 265, 475
Cfr13I GGNCC 3 cut(s) 166, 394, 483
CpoI CGGWCCG 1 cut(s) 166
Csp6I GTAC 1 cut(s) 340
CspI CGGWCCG 1 cut(s) 166
CviAII CATG 2 cut(s) 31, 352
CviQI GTAC 1 cut(s) 340
DdeI CTNAG 1 cut(s) 476
DpnI GATC 5 cut(s) 255, 280, 287, 323, 453
DpnII GATC 5 cut(s) 253, 278, 285, 321, 451
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 4 cut(s) 108, 194, 212, 239
EarI CTCTTC 4 cut(s) 108, 194, 212, 239
Eco31I GGTCTC 1 cut(s) 5
Eco47I GGWCC 2 cut(s) 166, 394
EcoRII CCWGG 1 cut(s) 363
Esp3I CGTCTC 1 cut(s) 140
FaeI CATG 2 cut(s) 34, 355
FaiI YATR 4 cut(s) 32, 353, 494, 584
FaqI GGGAC 1 cut(s) 548
FatI CATG 2 cut(s) 30, 351
FauI CCCGC 1 cut(s) 375
Fnu4HI GCNGC 1 cut(s) 274
FokI GGATG 1 cut(s) 482
Fsp4HI GCNGC 1 cut(s) 274
FspBI CTAG 2 cut(s) 407, 531
GlaI GCGC 2 cut(s) 264, 474
GluI GCNGC 1 cut(s) 274
GsuI CTGGAG 2 cut(s) 386, 464
HaeIII GGCC 3 cut(s) 5, 485, 506
HapII CCGG 1 cut(s) 397
HhaI GCGC 2 cut(s) 265, 475
Hin1II CATG 2 cut(s) 34, 355
Hin6I GCGC 2 cut(s) 263, 473
HinP1I GCGC 2 cut(s) 263, 473
HindIII AAGCTT 1 cut(s) 401
HinfI GANTC 2 cut(s) 161, 544
HpaII CCGG 1 cut(s) 397
HphI GGTGA 3 cut(s) 41, 50, 526
Hpy188III TCNNGA 1 cut(s) 181
Hpy99I CGWCG 1 cut(s) 11
HpyAV CCTTC 3 cut(s) 382, 430, 454
HpyCH4III ACNGT 2 cut(s) 134, 339
HpyCH4V TGCA 1 cut(s) 603
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 379
HpyF3I CTNAG 1 cut(s) 476
Hsp92II CATG 2 cut(s) 34, 355
HspAI GCGC 2 cut(s) 263, 473
Kzo9I GATC 5 cut(s) 253, 278, 285, 321, 451
LmnI GCTCC 4 cut(s) 34, 93, 118, 379
LpnPI CCDG 5 cut(s) 302, 350, 377, 410, 428
LweI GCATC 1 cut(s) 460
MaeI CTAG 2 cut(s) 407, 531
MaeIII GTNAC 1 cut(s) 541
MalI GATC 5 cut(s) 255, 280, 287, 323, 453
MbiI CCGCTC 1 cut(s) 382
MboI GATC 5 cut(s) 253, 278, 285, 321, 451
MflI RGATCY 1 cut(s) 285
MhlI GDGCHC 1 cut(s) 363
MluCI AATT 1 cut(s) 604
MlyI GAGTC 2 cut(s) 155, 538
MspI CCGG 1 cut(s) 397
MspR9I CCNGG 1 cut(s) 365
MvaI CCWGG 1 cut(s) 365
MvnI CGCG 1 cut(s) 263
MwoI GCNNNNNNNGC 2 cut(s) 23, 379
NdeII GATC 5 cut(s) 253, 278, 285, 321, 451
NlaIII CATG 2 cut(s) 34, 355
NlaIV GGNNCC 3 cut(s) 36, 287, 362
NmuCI GTSAC 1 cut(s) 541
PflFI GACNNNGTC 1 cut(s) 164
PkrI GCNGC 1 cut(s) 275
PleI GAGTC 2 cut(s) 155, 538
PpsI GAGTC 2 cut(s) 155, 538
Psp6I CCWGG 1 cut(s) 363
PspGI CCWGG 1 cut(s) 363
PspN4I GGNNCC 3 cut(s) 36, 287, 362
PspPI GGNCC 3 cut(s) 166, 394, 483
PsuI RGATCY 1 cut(s) 285
PsyI GACNNNGTC 1 cut(s) 164
RsaI GTAC 1 cut(s) 341
RsaNI GTAC 1 cut(s) 340
Rsr2I CGGWCCG 1 cut(s) 166
RsrII CGGWCCG 1 cut(s) 166
SatI GCNGC 1 cut(s) 274
Sau3AI GATC 5 cut(s) 253, 278, 285, 321, 451
Sau96I GGNCC 3 cut(s) 166, 394, 483
SchI GAGTC 2 cut(s) 155, 538
ScrFI CCNGG 1 cut(s) 365
SduI GDGCHC 1 cut(s) 363
SetI ASST 6 cut(s) 90, 123, 366, 375, 405, 468
SfaNI GCATC 1 cut(s) 460
SinI GGWCC 2 cut(s) 166, 394
SmlI CTYRAG 2 cut(s) 95, 143
SmoI CTYRAG 2 cut(s) 95, 143
Sse9I AATT 1 cut(s) 604
SsiI CCGC 4 cut(s) 15, 169, 274, 382
SspMI CTAG 2 cut(s) 407, 531
StyD4I CCNGG 1 cut(s) 363
TaaI ACNGT 2 cut(s) 134, 339
TaqI TCGA 3 cut(s) 159, 256, 420
TaqII GACCGA 2 cut(s) 154, 362
TasI AATT 1 cut(s) 604
TauI GCSGC 1 cut(s) 276
TscAI CASTG 1 cut(s) 256
TseFI GTSAC 1 cut(s) 541
Tsp45I GTSAC 1 cut(s) 541
TspDTI ATGAA 1 cut(s) 181
TspRI CASTG 1 cut(s) 256
Tth111I GACNNNGTC 1 cut(s) 164
VpaK11BI GGWCC 2 cut(s) 166, 394
XspI CTAG 2 cut(s) 407, 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.