Prupe.4G137100_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0012212
Physical Location & Seq
Reverse (-)
7629607 .. 7630484
878 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G137100.1

Sequence Viewer

Length: 609 bp
ATGGCCGACGAGAACGCAAACCAGTCAATCATGGAGCCAAAATCATGGCACCCTCTTCACCAAATCGCAGAGTCTCCAAGCCACAAGCTTCTGCTTAAGCAATGGCTGAAAGAAGAAGAGCTAATCCTCAACAGGGTCTCTCTGAAAGAGAACCAAATCGACTCCGTTCGCAAAGAGATCACAATGCTCTTCATATTCTTCTTCCTCTTCCACTCCACAGCTCTCATCCTTCTCTTCAGTTCCTCCTCGAGGGACCCACATGGGTTTGCATGCCGCCGGTCTTGGATCCCGTCACTCTGTTCTCTCTGCTTCTCTCTGGGGATCATTTGGGCCATAAGGTACAAGACTGACATGGAAGGTCACTTGGAGAAGCTTCTGGAGAGAGAGAAAGAGGATAAAAATCTTCTGGGCAAGTGCATCGAGGAGTTGAAGAAGAAGGGTTTGGAATTTGATTTGTTGAAGGAAGTTGATGCGCTTAGGAGGGCCAAGAGTTTGAGAGTTGAAGCTAAAGAGGTGAGGAAGTGGTCTGCTAGGGACTTTGTGACTTTGTTTTTCTTCACAGTGTCTTGCTTTGTGCTTGTTATCACAAGGGCTATTTTATGTAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

203

Amino Acids

23.65

Weight (kDa)

8.72

Isoelectric Point (pI)

44.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012212)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12870
fragaria_vesca FvH4_3g15460
malus_domestica MD01G1075700.v1.1 MD05G1223200.v1.1 MD10G1204600.v1.1 MD12G1131000.v1.1
prunus_persica Prupe.4G137100_v2.0.a1
pyrus_communis pycom05g20560 pycom10g17530
rosa_chinensis RchiOBHm_Chr5g0025961
rosa_laevigata RLG00000032887
rosa_multiflora Rmu_sc0003020.1_g000010
rosa_roxburghii Rroxscaffold_1G00053280
rosa_rugosa Rorug05G0089900
rosa_samantha Rh5AG181700 Rh5BG179800 Rh5CG198200 Rh5DG180700
rosa_wichuraiana Rw5G016530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 247
AccB1I GGYRCC 1 cut(s) 48
AciI CCGC 1 cut(s) 274
AclWI GGATC 3 cut(s) 280, 293, 329
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 446
AcuI CTGAAG 1 cut(s) 220
AfaI GTAC 1 cut(s) 341
AfiI CCNNNNNNNGG 2 cut(s) 133, 249
AflII CTTAAG 1 cut(s) 95
AgsI TTSAA 3 cut(s) 430, 460, 503
AjuI GAANNNNNNNTTGG 2 cut(s) 425, 457
AluBI AGCT 5 cut(s) 88, 121, 221, 373, 506
AluI AGCT 5 cut(s) 88, 121, 221, 373, 506
Alw26I GTCTC 2 cut(s) 78, 142
AlwI GGATC 3 cut(s) 280, 293, 329
Ama87I CYCGRG 1 cut(s) 247
AoxI GGCC 3 cut(s) 3, 330, 483
ApoI RAATTY 1 cut(s) 446
AspLEI GCGC 1 cut(s) 475
AspS9I GGNCC 3 cut(s) 253, 330, 483
AsuHPI GGTGA 2 cut(s) 50, 526
AvaI CYCGRG 1 cut(s) 247
AvaII GGWCC 1 cut(s) 253
BamHI GGATCC 1 cut(s) 285
BanI GGYRCC 1 cut(s) 48
BcgI CGANNNNNNTGC 2 cut(s) 400, 434
BcoDI GTCTC 2 cut(s) 78, 142
BfaI CTAG 2 cut(s) 531, 607
BfrI CTTAAG 1 cut(s) 95
BisI GCNGC 1 cut(s) 274
BlsI GCNGC 1 cut(s) 275
Bme18I GGWCC 1 cut(s) 253
BmeT110I CYCGRG 1 cut(s) 247
BmgT120I GGNCC 3 cut(s) 253, 330, 483
BmiI GGNNCC 5 cut(s) 36, 50, 254, 255, 287
BmsI GCATC 2 cut(s) 426, 460
BpmI CTGGAG 1 cut(s) 398
Bpu10I CCTNAGC 1 cut(s) 476
BsaBI GATNNNNATC 1 cut(s) 399
BsaI GGTCTC 1 cut(s) 142
Bsc4I CCNNNNNNNGG 2 cut(s) 133, 249
Bse118I RCCGGY 1 cut(s) 276
Bse1I ACTGG 1 cut(s) 22
Bse3DI GCAATG 1 cut(s) 107
Bse8I GATNNNNATC 1 cut(s) 399
BseGI GGATG 1 cut(s) 225
BseJI GATNNNNATC 1 cut(s) 399
BseLI CCNNNNNNNGG 2 cut(s) 133, 249
BseMI GCAATG 1 cut(s) 107
BseNI ACTGG 1 cut(s) 22
BseRI GAGGAG 2 cut(s) 235, 437
BshFI GGCC 3 cut(s) 5, 332, 485
BshNI GGYRCC 1 cut(s) 48
BsiHKCI CYCGRG 1 cut(s) 247
BsiSI CCGG 1 cut(s) 277
BslFI GGGAC 2 cut(s) 266, 548
BslI CCNNNNNNNGG 2 cut(s) 133, 249
BsmAI GTCTC 2 cut(s) 78, 142
BsmFI GGGAC 2 cut(s) 266, 548
BsnI GGCC 3 cut(s) 5, 332, 485
Bso31I GGTCTC 1 cut(s) 142
BsoBI CYCGRG 1 cut(s) 247
Bsp143I GATC 3 cut(s) 177, 285, 321
BspACI CCGC 1 cut(s) 274
BspANI GGCC 3 cut(s) 5, 332, 485
BspLI GGNNCC 5 cut(s) 36, 50, 254, 255, 287
BspPI GGATC 3 cut(s) 280, 293, 329
BspQI GCTCTTC 2 cut(s) 111, 194
BspT107I GGYRCC 1 cut(s) 48
BspTI CTTAAG 1 cut(s) 95
BspTNI GGTCTC 1 cut(s) 142
BsrDI GCAATG 1 cut(s) 107
BsrFI RCCGGY 1 cut(s) 276
BsrI ACTGG 1 cut(s) 22
BssAI RCCGGY 1 cut(s) 276
BssMI GATC 3 cut(s) 177, 285, 321
Bst4CI ACNGT 1 cut(s) 562
Bst6I CTCTTC 5 cut(s) 60, 111, 194, 212, 239
BstAFI CTTAAG 1 cut(s) 95
BstC8I GCNNGC 1 cut(s) 271
BstDEI CTNAG 1 cut(s) 476
BstENI CCTNNNNNAGG 1 cut(s) 247
BstF5I GGATG 1 cut(s) 225
BstHHI GCGC 1 cut(s) 475
BstKTI GATC 3 cut(s) 180, 288, 324
BstMAI GTCTC 2 cut(s) 78, 142
BstMBI GATC 3 cut(s) 177, 285, 321
BstNSI RCATGY 1 cut(s) 273
BstX2I RGATCY 1 cut(s) 285
BstXI CCANNNNNNTGG 1 cut(s) 45
BstYI RGATCY 1 cut(s) 285
BsuRI GGCC 3 cut(s) 5, 332, 485
BtsCI GGATG 1 cut(s) 225
BtsIMutI CAGTG 1 cut(s) 567
Cac8I GCNNGC 1 cut(s) 271
CfoI GCGC 1 cut(s) 475
Cfr10I RCCGGY 1 cut(s) 276
Cfr13I GGNCC 3 cut(s) 253, 330, 483
Csp6I GTAC 1 cut(s) 340
CviAII CATG 5 cut(s) 31, 45, 260, 270, 352
CviQI GTAC 1 cut(s) 340
DdeI CTNAG 1 cut(s) 476
DpnI GATC 3 cut(s) 179, 287, 323
DpnII GATC 3 cut(s) 177, 285, 321
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 5 cut(s) 60, 111, 194, 212, 239
EarI CTCTTC 5 cut(s) 60, 111, 194, 212, 239
Eco31I GGTCTC 1 cut(s) 142
Eco47I GGWCC 1 cut(s) 253
Eco57I CTGAAG 1 cut(s) 220
Eco88I CYCGRG 1 cut(s) 247
EcoNI CCTNNNNNAGG 1 cut(s) 247
EcoO109I RGGNCCY 1 cut(s) 253
FaeI CATG 5 cut(s) 34, 48, 263, 273, 355
FaiI YATR 8 cut(s) 32, 46, 194, 261, 271, 335, 353, 601
FaqI GGGAC 2 cut(s) 266, 548
FatI CATG 5 cut(s) 30, 44, 259, 269, 351
Fnu4HI GCNGC 1 cut(s) 274
FokI GGATG 1 cut(s) 212
Fsp4HI GCNGC 1 cut(s) 274
FspBI CTAG 2 cut(s) 531, 607
GlaI GCGC 1 cut(s) 474
GluI GCNGC 1 cut(s) 274
GsuI CTGGAG 1 cut(s) 398
HaeIII GGCC 3 cut(s) 5, 332, 485
HapII CCGG 1 cut(s) 277
HhaI GCGC 1 cut(s) 475
Hin1II CATG 5 cut(s) 34, 48, 263, 273, 355
Hin6I GCGC 1 cut(s) 473
HinP1I GCGC 1 cut(s) 473
HindIII AAGCTT 2 cut(s) 86, 371
HinfI GANTC 2 cut(s) 71, 161
HpaII CCGG 1 cut(s) 277
HphI GGTGA 2 cut(s) 50, 526
Hpy188I TCNGA 1 cut(s) 144
Hpy188III TCNNGA 1 cut(s) 377
Hpy99I CGWCG 1 cut(s) 11
HpyAV CCTTC 4 cut(s) 239, 350, 430, 454
HpyCH4III ACNGT 1 cut(s) 562
HpyCH4V TGCA 2 cut(s) 269, 417
HpyF3I CTNAG 1 cut(s) 476
Hsp92II CATG 5 cut(s) 34, 48, 263, 273, 355
HspAI GCGC 1 cut(s) 473
KflI GGGWCCC 1 cut(s) 253
Kzo9I GATC 3 cut(s) 177, 285, 321
LguI GCTCTTC 2 cut(s) 111, 194
LmnI GCTCC 1 cut(s) 34
LpnPI CCDG 6 cut(s) 35, 118, 290, 302, 362, 392
LweI GCATC 2 cut(s) 426, 460
MaeI CTAG 2 cut(s) 531, 607
MaeIII GTNAC 4 cut(s) 291, 359, 541, 602
MalI GATC 3 cut(s) 179, 287, 323
MboI GATC 3 cut(s) 177, 285, 321
MflI RGATCY 1 cut(s) 285
MluCI AATT 1 cut(s) 446
MlyI GAGTC 2 cut(s) 80, 155
MseI TTAA 1 cut(s) 96
MspCI CTTAAG 1 cut(s) 95
MspI CCGG 1 cut(s) 277
NdeII GATC 3 cut(s) 177, 285, 321
NlaIII CATG 5 cut(s) 34, 48, 263, 273, 355
NlaIV GGNNCC 5 cut(s) 36, 50, 254, 255, 287
NmuCI GTSAC 3 cut(s) 291, 359, 541
NspI RCATGY 1 cut(s) 273
PaeI GCATGC 1 cut(s) 273
PaeR7I CTCGAG 1 cut(s) 247
PciSI GCTCTTC 2 cut(s) 111, 194
PkrI GCNGC 1 cut(s) 275
PleI GAGTC 2 cut(s) 79, 155
PpsI GAGTC 2 cut(s) 79, 155
PpuMI RGGWCCY 1 cut(s) 253
Psp5II RGGWCCY 1 cut(s) 253
PspN4I GGNNCC 5 cut(s) 36, 50, 254, 255, 287
PspPI GGNCC 3 cut(s) 253, 330, 483
PspPPI RGGWCCY 1 cut(s) 253
PspXI VCTCGAGB 1 cut(s) 247
PsuI RGATCY 1 cut(s) 285
RsaI GTAC 1 cut(s) 341
RsaNI GTAC 1 cut(s) 340
SapI GCTCTTC 2 cut(s) 111, 194
SaqAI TTAA 1 cut(s) 96
SatI GCNGC 1 cut(s) 274
Sau3AI GATC 3 cut(s) 177, 285, 321
Sau96I GGNCC 3 cut(s) 253, 330, 483
SchI GAGTC 2 cut(s) 80, 155
SetI ASST 8 cut(s) 90, 123, 223, 341, 361, 375, 508, 516
SfaNI GCATC 2 cut(s) 426, 460
Sfr274I CTCGAG 1 cut(s) 247
SinI GGWCC 1 cut(s) 253
SlaI CTCGAG 1 cut(s) 247
SmlI CTYRAG 2 cut(s) 95, 247
SmoI CTYRAG 2 cut(s) 95, 247
SphI GCATGC 1 cut(s) 273
Sse9I AATT 1 cut(s) 446
SsiI CCGC 1 cut(s) 274
SspMI CTAG 2 cut(s) 531, 607
TaaI ACNGT 1 cut(s) 562
TaqI TCGA 3 cut(s) 159, 248, 420
TasI AATT 1 cut(s) 446
TauI GCSGC 1 cut(s) 276
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TscAI CASTG 1 cut(s) 567
TseFI GTSAC 3 cut(s) 291, 359, 541
Tsp45I GTSAC 3 cut(s) 291, 359, 541
TspDTI ATGAA 1 cut(s) 181
TspGWI ACGGA 1 cut(s) 154
TspRI CASTG 1 cut(s) 567
Vha464I CTTAAG 1 cut(s) 95
VpaK11BI GGWCC 1 cut(s) 253
XagI CCTNNNNNAGG 1 cut(s) 247
XapI RAATTY 1 cut(s) 446
XceI RCATGY 1 cut(s) 273
XhoI CTCGAG 1 cut(s) 247
XspI CTAG 2 cut(s) 531, 607
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.