domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G55930 AT1G55930 AT3G13070 |
| malus_domestica | MD03G1188400.v1.1 MD11G1204000.v1.1 |
| prunus_persica | Prupe.4G235000_v2.0.a1 Prupe.4G235000_v2.0.a1 Prupe.4G235000_v2.0.a1 Prupe.4G235000_v2.0.a1 |
| pyrus_communis | pycom03g14090 pycom11g17690 pycom11g17700 |
| rosa_chinensis | RchiOBHm_Chr1g0355491 RchiOBHm_Chr2g0115171 RchiOBHm_Chr5g0043101 |
| rosa_laevigata | RLG00000031847 |
| rosa_multiflora | Rmu_sc0001714.1_g000010 Rmu_sc0002079.1_g000010 Rmu_sc0008148.1_g000026 |
| rosa_roxburghii | Rroxscaffold_1G00037630 Rroxscaffold_1G00037750 |
| rosa_samantha | Rh2CG257200 Rh5BG295700 |
| rosa_wichuraiana | Rw2G047580 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 542 |
| Acc36I | ACCTGC | 1 cut(s) | 1297 |
| AccB1I | GGYRCC | 2 cut(s) | 1001, 1165 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 555, 599, 1643 |
| AccIII | TCCGGA | 1 cut(s) | 618 |
| AciI | CCGC | 1 cut(s) | 680 |
| AclWI | GGATC | 2 cut(s) | 1227, 1830 |
| AcoI | YGGCCR | 1 cut(s) | 557 |
| AcsI | RAATTY | 7 cut(s) | 64, 194, 450, 918, 1337, 1440, 1865 |
| AcuI | CTGAAG | 3 cut(s) | 720, 978, 1575 |
| AcyI | GRCGYC | 2 cut(s) | 539, 1107 |
| AdeI | CACNNNGTG | 1 cut(s) | 555 |
| AfaI | GTAC | 4 cut(s) | 1157, 1261, 1592, 1956 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 555, 599, 1643 |
| AflIII | ACRYGT | 1 cut(s) | 1951 |
| AgsI | TTSAA | 9 cut(s) | 20, 70, 931, 970, 1010, 1034, 1311, 1412, 1670 |
| AjnI | CCWGG | 1 cut(s) | 456 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1416, 1448 |
| Alw21I | GWGCWC | 2 cut(s) | 331, 810 |
| Alw26I | GTCTC | 3 cut(s) | 530, 1589, 1606 |
| Alw44I | GTGCAC | 1 cut(s) | 806 |
| AlwI | GGATC | 2 cut(s) | 1227, 1830 |
| Aor13HI | TCCGGA | 1 cut(s) | 618 |
| AoxI | GGCC | 3 cut(s) | 557, 842, 1620 |
| ApaLI | GTGCAC | 1 cut(s) | 806 |
| ApeKI | GCWGC | 7 cut(s) | 124, 497, 502, 704, 740, 1180, 1884 |
| ApoI | RAATTY | 7 cut(s) | 64, 194, 450, 918, 1337, 1440, 1865 |
| AspLEI | GCGC | 2 cut(s) | 502, 1115 |
| AsuHPI | GGTGA | 7 cut(s) | 284, 622, 1084, 1156, 1256, 1448, 1706 |
| BaeGI | GKGCMC | 1 cut(s) | 810 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1047, 1080 |
| BanI | GGYRCC | 2 cut(s) | 1001, 1165 |
| BanII | GRGCYC | 1 cut(s) | 331 |
| BauI | CACGAG | 1 cut(s) | 242 |
| BbsI | GAAGAC | 1 cut(s) | 1926 |
| Bbv12I | GWGCWC | 2 cut(s) | 331, 810 |
| BbvI | GCAGC | 7 cut(s) | 111, 484, 489, 716, 727, 1192, 1896 |
| BccI | CCATC | 3 cut(s) | 1158, 1685, 1892 |
| BceAI | ACGGC | 1 cut(s) | 544 |
| BciT130I | CCWGG | 1 cut(s) | 458 |
| BciVI | GTATCC | 1 cut(s) | 1048 |
| BcoDI | GTCTC | 3 cut(s) | 530, 1589, 1606 |
| BfaI | CTAG | 5 cut(s) | 332, 1043, 1121, 1226, 1766 |
| BfmI | CTRYAG | 2 cut(s) | 202, 1750 |
| BfoI | RGCGCY | 1 cut(s) | 1116 |
| BfuAI | ACCTGC | 1 cut(s) | 1297 |
| BfuI | GTATCC | 1 cut(s) | 1048 |
| BisI | GCNGC | 8 cut(s) | 125, 498, 503, 681, 705, 741, 1181, 1885 |
| BlpI | GCTNAGC | 2 cut(s) | 120, 506 |
| BlsI | GCNGC | 8 cut(s) | 126, 499, 504, 682, 706, 742, 1182, 1886 |
| BmcAI | AGTACT | 2 cut(s) | 1157, 1261 |
| Bme1390I | CCNGG | 1 cut(s) | 458 |
| BmiI | GGNNCC | 3 cut(s) | 1003, 1167, 1860 |
| BmrFI | CCNGG | 1 cut(s) | 458 |
| BmsI | GCATC | 3 cut(s) | 383, 966, 1516 |
| BpiI | GAAGAC | 1 cut(s) | 1926 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1586, 1618 |
| BpmI | CTGGAG | 3 cut(s) | 214, 305, 1665 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 120, 506 |
| BpuEI | CTTGAG | 2 cut(s) | 801, 1144 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1821 |
| BsaHI | GRCGYC | 2 cut(s) | 539, 1107 |
| BsaJI | CCNNGG | 1 cut(s) | 560 |
| BsaWI | WCCGGW | 2 cut(s) | 618, 1797 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 272, 302, 318, 348, 1638, 1668 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 555, 599, 1643 |
| Bse1I | ACTGG | 7 cut(s) | 231, 696, 751, 845, 1116, 1648, 1962 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1821 |
| BseAI | TCCGGA | 1 cut(s) | 618 |
| BseBI | CCWGG | 1 cut(s) | 458 |
| BseDI | CCNNGG | 1 cut(s) | 560 |
| BseGI | GGATG | 2 cut(s) | 362, 1696 |
| BseJI | GATNNNNATC | 1 cut(s) | 1821 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 555, 599, 1643 |
| BseMII | CTCAG | 6 cut(s) | 111, 520, 528, 573, 771, 1617 |
| BseNI | ACTGG | 7 cut(s) | 231, 696, 751, 845, 1116, 1648, 1962 |
| BseRI | GAGGAG | 4 cut(s) | 1031, 1481, 1712, 1715 |
| BseSI | GKGCMC | 1 cut(s) | 810 |
| BseXI | GCAGC | 7 cut(s) | 111, 484, 489, 716, 727, 1192, 1896 |
| BseYI | CCCAGC | 1 cut(s) | 1680 |
| BsgI | GTGCAG | 3 cut(s) | 110, 672, 1008 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1395 |
| BshFI | GGCC | 3 cut(s) | 559, 844, 1622 |
| BshNI | GGYRCC | 2 cut(s) | 1001, 1165 |
| BsiEI | CGRYCG | 1 cut(s) | 1395 |
| BsiHKAI | GWGCWC | 2 cut(s) | 331, 810 |
| BsiSI | CCGG | 2 cut(s) | 619, 1798 |
| BslFI | GGGAC | 2 cut(s) | 1286, 1286 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 555, 599, 1643 |
| BsmAI | GTCTC | 3 cut(s) | 530, 1589, 1606 |
| BsmBI | CGTCTC | 1 cut(s) | 530 |
| BsmFI | GGGAC | 2 cut(s) | 1286, 1286 |
| BsmI | GAATGC | 6 cut(s) | 442, 518, 618, 1584, 1780, 1939 |
| BsnI | GGCC | 3 cut(s) | 559, 844, 1622 |
| Bsp1286I | GDGCHC | 2 cut(s) | 331, 810 |
| Bsp13I | TCCGGA | 1 cut(s) | 618 |
| Bsp143I | GATC | 5 cut(s) | 38, 1219, 1246, 1392, 1822 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 120, 506 |
| BspACI | CCGC | 1 cut(s) | 680 |
| BspANI | GGCC | 3 cut(s) | 559, 844, 1622 |
| BspCNI | CTCAG | 6 cut(s) | 112, 519, 527, 574, 772, 1616 |
| BspEI | TCCGGA | 1 cut(s) | 618 |
| BspHI | TCATGA | 1 cut(s) | 1497 |
| BspLI | GGNNCC | 3 cut(s) | 1003, 1167, 1860 |
| BspMI | ACCTGC | 1 cut(s) | 1297 |
| BspPI | GGATC | 2 cut(s) | 1227, 1830 |
| BspT107I | GGYRCC | 2 cut(s) | 1001, 1165 |
| BsrI | ACTGG | 7 cut(s) | 231, 696, 751, 845, 1116, 1648, 1962 |
| BssECI | CCNNGG | 1 cut(s) | 560 |
| BssMI | GATC | 5 cut(s) | 38, 1219, 1246, 1392, 1822 |
| BssNI | GRCGYC | 2 cut(s) | 539, 1107 |
| BssSI | CACGAG | 1 cut(s) | 242 |
| Bst2BI | CACGAG | 1 cut(s) | 242 |
| Bst2UI | CCWGG | 1 cut(s) | 458 |
| Bst4CI | ACNGT | 4 cut(s) | 469, 667, 760, 1600 |
| Bst6I | CTCTTC | 4 cut(s) | 65, 1008, 1419, 1680 |
| BstACI | GRCGYC | 2 cut(s) | 539, 1107 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1775 |
| BstC8I | GCNNGC | 2 cut(s) | 397, 1111 |
| BstDSI | CCRYGG | 1 cut(s) | 560 |
| BstEII | GGTNACC | 1 cut(s) | 1144 |
| BstF5I | GGATG | 2 cut(s) | 362, 1696 |
| BstH2I | RGCGCY | 1 cut(s) | 1116 |
| BstHHI | GCGC | 2 cut(s) | 502, 1115 |
| BstKTI | GATC | 5 cut(s) | 41, 1222, 1249, 1395, 1825 |
| BstMAI | GTCTC | 3 cut(s) | 530, 1589, 1606 |
| BstMBI | GATC | 5 cut(s) | 38, 1219, 1246, 1392, 1822 |
| BstMCI | CGRYCG | 1 cut(s) | 1395 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 686, 710, 1106, 1775 |
| BstNI | CCWGG | 1 cut(s) | 458 |
| BstNSI | RCATGY | 1 cut(s) | 1955 |
| BstPI | GGTNACC | 1 cut(s) | 1144 |
| BstSCI | CCNGG | 1 cut(s) | 456 |
| BstSFI | CTRYAG | 2 cut(s) | 202, 1750 |
| BstSLI | GKGCMC | 1 cut(s) | 810 |
| BstV1I | GCAGC | 7 cut(s) | 111, 484, 489, 716, 727, 1192, 1896 |
| BstV2I | GAAGAC | 1 cut(s) | 1926 |
| BstX2I | RGATCY | 1 cut(s) | 1219 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 852 |
| BstYI | RGATCY | 1 cut(s) | 1219 |
| BsuI | GTATCC | 1 cut(s) | 1048 |
| BsuRI | GGCC | 3 cut(s) | 559, 844, 1622 |
| BtgI | CCRYGG | 1 cut(s) | 560 |
| BtsCI | GGATG | 2 cut(s) | 362, 1696 |
| BtsI | GCAGTG | 1 cut(s) | 127 |
| BtsIMutI | CAGTG | 6 cut(s) | 127, 689, 696, 744, 765, 852 |
| BveI | ACCTGC | 1 cut(s) | 1297 |
| Cac8I | GCNNGC | 2 cut(s) | 397, 1111 |
| CciI | TCATGA | 1 cut(s) | 1497 |
| CfoI | GCGC | 2 cut(s) | 502, 1115 |
| CseI | GACGC | 1 cut(s) | 1115 |
| CsiI | ACCWGGT | 1 cut(s) | 456 |
| Csp6I | GTAC | 4 cut(s) | 1156, 1260, 1591, 1955 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 816, 851 |
| CviAII | CATG | 6 cut(s) | 1061, 1276, 1360, 1498, 1855, 1952 |
| CviQI | GTAC | 4 cut(s) | 1156, 1260, 1591, 1955 |
| DpnI | GATC | 5 cut(s) | 40, 1221, 1248, 1394, 1824 |
| DpnII | GATC | 5 cut(s) | 38, 1219, 1246, 1392, 1822 |
| DraIII | CACNNNGTG | 1 cut(s) | 555 |
| EaeI | YGGCCR | 1 cut(s) | 557 |
| Eam1104I | CTCTTC | 4 cut(s) | 65, 1008, 1419, 1680 |
| EarI | CTCTTC | 4 cut(s) | 65, 1008, 1419, 1680 |
| Ecl136II | GAGCTC | 1 cut(s) | 329 |
| Eco147I | AGGCCT | 1 cut(s) | 1622 |
| Eco24I | GRGCYC | 1 cut(s) | 331 |
| Eco53kI | GAGCTC | 1 cut(s) | 329 |
| Eco57I | CTGAAG | 3 cut(s) | 720, 978, 1575 |
| Eco91I | GGTNACC | 1 cut(s) | 1144 |
| EcoICRI | GAGCTC | 1 cut(s) | 329 |
| EcoO65I | GGTNACC | 1 cut(s) | 1144 |
| EcoRI | GAATTC | 1 cut(s) | 1337 |
| EcoRII | CCWGG | 1 cut(s) | 456 |
| EcoT38I | GRGCYC | 1 cut(s) | 331 |
| Esp3I | CGTCTC | 1 cut(s) | 530 |
| FaeI | CATG | 6 cut(s) | 1064, 1279, 1363, 1501, 1858, 1955 |
| FaqI | GGGAC | 2 cut(s) | 1286, 1286 |
| FatI | CATG | 6 cut(s) | 1060, 1275, 1359, 1497, 1854, 1951 |
| FauNDI | CATATG | 2 cut(s) | 949, 1210 |
| Fnu4HI | GCNGC | 8 cut(s) | 125, 498, 503, 681, 705, 741, 1181, 1885 |
| FokI | GGATG | 2 cut(s) | 369, 1703 |
| FriOI | GRGCYC | 1 cut(s) | 331 |
| Fsp4HI | GCNGC | 8 cut(s) | 125, 498, 503, 681, 705, 741, 1181, 1885 |
| FspBI | CTAG | 5 cut(s) | 332, 1043, 1121, 1226, 1766 |
| GlaI | GCGC | 2 cut(s) | 501, 1114 |
| GluI | GCNGC | 8 cut(s) | 125, 498, 503, 681, 705, 741, 1181, 1885 |
| GsaI | CCCAGC | 1 cut(s) | 1684 |
| GsuI | CTGGAG | 3 cut(s) | 214, 305, 1665 |
| HaeII | RGCGCY | 1 cut(s) | 1116 |
| HaeIII | GGCC | 3 cut(s) | 559, 844, 1622 |
| HapII | CCGG | 2 cut(s) | 619, 1798 |
| HgaI | GACGC | 1 cut(s) | 1115 |
| HhaI | GCGC | 2 cut(s) | 502, 1115 |
| Hin1I | GRCGYC | 2 cut(s) | 539, 1107 |
| Hin1II | CATG | 6 cut(s) | 1064, 1279, 1363, 1501, 1858, 1955 |
| Hin6I | GCGC | 2 cut(s) | 500, 1113 |
| HinP1I | GCGC | 2 cut(s) | 500, 1113 |
| HincII | GTYRAC | 1 cut(s) | 254 |
| HindII | GTYRAC | 1 cut(s) | 254 |
| HindIII | AAGCTT | 1 cut(s) | 92 |
| HpaII | CCGG | 2 cut(s) | 619, 1798 |
| HphI | GGTGA | 7 cut(s) | 284, 622, 1084, 1156, 1256, 1448, 1706 |
| Hpy166II | GTNNAC | 6 cut(s) | 254, 808, 944, 1357, 1712, 1813 |
| Hpy8I | GTNNAC | 6 cut(s) | 254, 808, 944, 1357, 1712, 1813 |
| Hpy99I | CGWCG | 1 cut(s) | 186 |
| HpyAV | CCTTC | 4 cut(s) | 559, 1234, 1651, 1700 |
| HpyCH4III | ACNGT | 4 cut(s) | 469, 667, 760, 1600 |
| HpyCH4IV | ACGT | 2 cut(s) | 310, 539 |
| HpyCH4V | TGCA | 8 cut(s) | 127, 689, 808, 827, 989, 1208, 1292, 1778 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 686, 710, 1106, 1775 |
| HpySE526I | ACGT | 2 cut(s) | 310, 539 |
| Hsp92I | GRCGYC | 2 cut(s) | 539, 1107 |
| Hsp92II | CATG | 6 cut(s) | 1064, 1279, 1363, 1501, 1858, 1955 |
| HspAI | GCGC | 2 cut(s) | 500, 1113 |
| Kpn2I | TCCGGA | 1 cut(s) | 618 |
| Kzo9I | GATC | 5 cut(s) | 38, 1219, 1246, 1392, 1822 |
| LmnI | GCTCC | 6 cut(s) | 233, 280, 326, 621, 1018, 1881 |
| Lsp1109I | GCAGC | 7 cut(s) | 111, 484, 489, 716, 727, 1192, 1896 |
| LweI | GCATC | 3 cut(s) | 383, 966, 1516 |
| MabI | ACCWGGT | 1 cut(s) | 456 |
| MaeI | CTAG | 5 cut(s) | 332, 1043, 1121, 1226, 1766 |
| MaeII | ACGT | 2 cut(s) | 310, 539 |
| MaeIII | GTNAC | 7 cut(s) | 239, 628, 694, 889, 952, 1144, 1402 |
| MalI | GATC | 5 cut(s) | 40, 1221, 1248, 1394, 1824 |
| MboI | GATC | 5 cut(s) | 38, 1219, 1246, 1392, 1822 |
| MfeI | CAATTG | 2 cut(s) | 1101, 1539 |
| MflI | RGATCY | 1 cut(s) | 1219 |
| MhlI | GDGCHC | 2 cut(s) | 331, 810 |
| MlyI | GAGTC | 3 cut(s) | 44, 296, 1072 |
| MmeI | TCCRAC | 4 cut(s) | 205, 859, 1812, 1935 |
| MroI | TCCGGA | 1 cut(s) | 618 |
| MseI | TTAA | 5 cut(s) | 62, 294, 432, 1050, 1374 |
| MspI | CCGG | 2 cut(s) | 619, 1798 |
| MspR9I | CCNGG | 1 cut(s) | 458 |
| MunI | CAATTG | 2 cut(s) | 1101, 1539 |
| Mva1269I | GAATGC | 6 cut(s) | 442, 518, 618, 1584, 1780, 1939 |
| MvaI | CCWGG | 1 cut(s) | 458 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 686, 710, 1106, 1775 |
| NdeI | CATATG | 2 cut(s) | 949, 1210 |
| NdeII | GATC | 5 cut(s) | 38, 1219, 1246, 1392, 1822 |
| NlaIII | CATG | 6 cut(s) | 1064, 1279, 1363, 1501, 1858, 1955 |
| NlaIV | GGNNCC | 3 cut(s) | 1003, 1167, 1860 |
| NmuCI | GTSAC | 5 cut(s) | 239, 628, 694, 889, 1144 |
| NspI | RCATGY | 1 cut(s) | 1955 |
| PagI | TCATGA | 1 cut(s) | 1497 |
| PceI | AGGCCT | 1 cut(s) | 1622 |
| PciI | ACATGT | 1 cut(s) | 1951 |
| PctI | GAATGC | 6 cut(s) | 442, 518, 618, 1584, 1780, 1939 |
| PfeI | GAWTC | 7 cut(s) | 177, 266, 636, 1307, 1324, 1457, 1471 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 555, 599, 1643 |
| PkrI | GCNGC | 8 cut(s) | 126, 499, 504, 682, 706, 742, 1182, 1886 |
| Ple19I | CGATCG | 1 cut(s) | 1395 |
| PleI | GAGTC | 3 cut(s) | 44, 295, 1072 |
| PpsI | GAGTC | 3 cut(s) | 44, 295, 1072 |
| PscI | ACATGT | 1 cut(s) | 1951 |
| Psp124BI | GAGCTC | 1 cut(s) | 331 |
| Psp6I | CCWGG | 1 cut(s) | 456 |
| PspEI | GGTNACC | 1 cut(s) | 1144 |
| PspFI | CCCAGC | 1 cut(s) | 1680 |
| PspGI | CCWGG | 1 cut(s) | 456 |
| PspN4I | GGNNCC | 3 cut(s) | 1003, 1167, 1860 |
| PsuI | RGATCY | 1 cut(s) | 1219 |
| PvuI | CGATCG | 1 cut(s) | 1395 |
| RsaI | GTAC | 4 cut(s) | 1157, 1261, 1592, 1956 |
| RsaNI | GTAC | 4 cut(s) | 1156, 1260, 1591, 1955 |
| SacI | GAGCTC | 1 cut(s) | 331 |
| SaqAI | TTAA | 5 cut(s) | 62, 294, 432, 1050, 1374 |
| SatI | GCNGC | 8 cut(s) | 125, 498, 503, 681, 705, 741, 1181, 1885 |
| Sau3AI | GATC | 5 cut(s) | 38, 1219, 1246, 1392, 1822 |
| ScaI | AGTACT | 2 cut(s) | 1157, 1261 |
| SchI | GAGTC | 3 cut(s) | 44, 296, 1072 |
| ScrFI | CCNGG | 1 cut(s) | 458 |
| SduI | GDGCHC | 2 cut(s) | 331, 810 |
| SexAI | ACCWGGT | 1 cut(s) | 456 |
| SfaNI | GCATC | 3 cut(s) | 383, 966, 1516 |
| SfcI | CTRYAG | 2 cut(s) | 202, 1750 |
| SmlI | CTYRAG | 2 cut(s) | 816, 1159 |
| SmoI | CTYRAG | 2 cut(s) | 816, 1159 |
| SseBI | AGGCCT | 1 cut(s) | 1622 |
| SsiI | CCGC | 1 cut(s) | 680 |
| SspI | AATATT | 1 cut(s) | 676 |
| SspMI | CTAG | 5 cut(s) | 332, 1043, 1121, 1226, 1766 |
| SstI | GAGCTC | 1 cut(s) | 331 |
| StuI | AGGCCT | 1 cut(s) | 1622 |
| StyD4I | CCNGG | 1 cut(s) | 456 |
| TaaI | ACNGT | 4 cut(s) | 469, 667, 760, 1600 |
| TaiI | ACGT | 2 cut(s) | 313, 542 |
| TaqI | TCGA | 6 cut(s) | 37, 89, 290, 390, 1066, 1422 |
| TatI | WGTACW | 3 cut(s) | 1155, 1259, 1954 |
| TauI | GCSGC | 1 cut(s) | 683 |
| TfiI | GAWTC | 7 cut(s) | 177, 266, 636, 1307, 1324, 1457, 1471 |
| Tru1I | TTAA | 5 cut(s) | 62, 294, 432, 1050, 1374 |
| Tru9I | TTAA | 5 cut(s) | 62, 294, 432, 1050, 1374 |
| TscAI | CASTG | 6 cut(s) | 134, 696, 703, 751, 765, 852 |
| TseFI | GTSAC | 5 cut(s) | 239, 628, 694, 889, 1144 |
| TseI | GCWGC | 7 cut(s) | 124, 497, 502, 704, 740, 1180, 1884 |
| Tsp45I | GTSAC | 5 cut(s) | 239, 628, 694, 889, 1144 |
| TspDTI | ATGAA | 3 cut(s) | 1464, 1583, 1962 |
| TspGWI | ACGGA | 1 cut(s) | 952 |
| TspRI | CASTG | 6 cut(s) | 134, 696, 703, 751, 765, 852 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 555, 599, 1643 |
| VneI | GTGCAC | 1 cut(s) | 806 |
| XapI | RAATTY | 7 cut(s) | 64, 194, 450, 918, 1337, 1440, 1865 |
| XbaI | TCTAGA | 1 cut(s) | 1225 |
| XceI | RCATGY | 1 cut(s) | 1955 |
| XspI | CTAG | 5 cut(s) | 332, 1043, 1121, 1226, 1766 |
| ZraI | GACGTC | 1 cut(s) | 540 |
| ZrmI | AGTACT | 2 cut(s) | 1157, 1261 |