Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0007612

Physical Location & Seq

Genomic Coordinates Reverse (-)

37739414 .. 37747146

Gene Structure 7733 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG295700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGCGCTTGAGTCTTCAATTCTAAGCCCGCCCAGATTCATTTCTGGTTCTGGTTCGAAATCATTGTGTTTCTTGTATTACCATAAGCAGAAAAATTTCCCCACCAAGGTTTTGGTGCAAAATAATCGATACCCATTTCGATTGGTGTTGAATTGGATTGACACTAGCGATTTTGGGAGGTTCTTAGGTCCAAGATGCGAGGGAGTCGACTTGTTTGCGAATAGAGCTTGTTTGAGAGCTGTAGGTAAAGATAGTGAGAGTTCTAGTGGTACAAATGCTATTTTGGGTTTGAGTTTTGATTTTGTGAGGGTAATGGTGAAGTGTGGAGTTGTTTTAGCGGCTATGGTTTGTGGGGTTTTGGTGTATGGGGCTAGGAGAGCTTTTGCTGTGGAGGGTGTGGTCAATGCAAGCTATGGGGTTGTTGACAAGTGCATGTTGATGTTCAGAAATGCTTGGCCGAAGACGCTATGGCCTTGGAAGGTGTGTGAGTTGGCTGAGAAAGAGCCTGAAAATGGTGTCTTCAGTTTGCTTCGCAATGATGTGACTCGGTTCTTGTCAACCATACTTATTGGCACAACTGTTGTCAATATTAGAGCAACTGCTTTAGTTACAGAGGCTGCAACAGCGATATTTGGTGAAGCTGGTGTTTGTGCAGCAACTGGAGTAATGACTATAATTACCCTACAAGATGTGGTGGAGGAAATTGTTGGTAAAATATTTGATGAAAATGATTCCAAGGAGGTGATTCAGAAAAAAGGGTACATCGTAATGCGTGCAGAGGGAGTATTTGATGTGGATGCAAACACATCTATAGACCAGCTCTCTGAAGATCTAAATGTGAAAATGCCTGAGAAATGCTTGGCCGAAGACGCTGCTGGTTCTTCAGGTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS CorC_HlyC DUF21

Protein Analysis

297

Amino Acids

32.43

Weight (kDa)

5.67

Isoelectric Point (pI)

34.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CNNM	PF01595	159 - 237	7.4e-10	Cyclin M transmembrane N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007612)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55930 AT1G55930 AT3G13070
malus_domestica	MD03G1188400.v1.1 MD11G1204000.v1.1
prunus_persica	Prupe.4G235000_v2.0.a1 Prupe.4G235000_v2.0.a1 Prupe.4G235000_v2.0.a1 Prupe.4G235000_v2.0.a1
pyrus_communis	pycom03g14090 pycom11g17690 pycom11g17700
rosa_chinensis	RchiOBHm_Chr1g0355491 RchiOBHm_Chr2g0115171 RchiOBHm_Chr5g0043101
rosa_laevigata	RLG00000031847
rosa_multiflora	Rmu_sc0001714.1_g000010 Rmu_sc0002079.1_g000010 Rmu_sc0008148.1_g000026
rosa_roxburghii	Rroxscaffold_1G00037630 Rroxscaffold_1G00037750
rosa_samantha	Rh2CG257200 Rh5BG295700
rosa_wichuraiana	Rw2G047580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	207
AciI	CCGC	2 cut(s)	29, 338
AcoI	YGGCCR	2 cut(s)	455, 861
AcsI	RAATTY	1 cut(s)	94
AcuI	CTGAAG	3 cut(s)	505, 846, 867
AfaI	GTAC	2 cut(s)	271, 761
AfiI	CCNNNNNNNGG	2 cut(s)	106, 512
AgsI	TTSAA	2 cut(s)	18, 151
AluBI	AGCT	6 cut(s)	227, 239, 380, 411, 641, 820
AluI	AGCT	6 cut(s)	227, 239, 380, 411, 641, 820
AlwNI	CAGNNNCTG	2 cut(s)	617, 659
AoxI	GGCC	3 cut(s)	455, 470, 861
ApeKI	GCWGC	3 cut(s)	617, 653, 872
ApoI	RAATTY	1 cut(s)	94
Asp700I	GAANNNNTTC	1 cut(s)	95
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	1 cut(s)	188
AsuHPI	GGTGA	3 cut(s)	328, 647, 754
AsuII	TTCGAA	1 cut(s)	56
AvaII	GGWCC	1 cut(s)	188
BbsI	GAAGAC	4 cut(s)	6, 467, 511, 873
BbvI	GCAGC	3 cut(s)	604, 665, 859
BcgI	CGANNNNNNTGC	6 cut(s)	107, 141, 197, 231, 854, 888
BfaI	CTAG	3 cut(s)	165, 264, 372
BfmI	CTRYAG	2 cut(s)	240, 810
BfoI	RGCGCY	1 cut(s)	8
BglII	AGATCT	1 cut(s)	829
BisI	GCNGC	4 cut(s)	339, 618, 654, 873
BlsI	GCNGC	4 cut(s)	340, 619, 655, 874
Bme18I	GGWCC	1 cut(s)	188
BmgT120I	GGNCC	1 cut(s)	188
BmsI	GCATC	2 cut(s)	185, 787
BpiI	GAAGAC	4 cut(s)	6, 467, 511, 873
BpmI	CTGGAG	1 cut(s)	681
Bpu14I	TTCGAA	1 cut(s)	56
BpuEI	CTTGAG	1 cut(s)	29
Bsa29I	ATCGAT	1 cut(s)	127
BsaJI	CCNNGG	3 cut(s)	105, 473, 735
Bsc4I	CCNNNNNNNGG	2 cut(s)	106, 512
Bse1I	ACTGG	1 cut(s)	664
Bse3DI	GCAATG	1 cut(s)	541
BseCI	ATCGAT	1 cut(s)	127
BseDI	CCNNGG	3 cut(s)	105, 473, 735
BseGI	GGATG	1 cut(s)	802
BseLI	CCNNNNNNNGG	2 cut(s)	106, 512
BseMI	GCAATG	1 cut(s)	541
BseMII	CTCAG	2 cut(s)	486, 840
BseNI	ACTGG	1 cut(s)	664
BseXI	GCAGC	3 cut(s)	604, 665, 859
BsgI	GTGCAG	2 cut(s)	672, 795
BshFI	GGCC	3 cut(s)	457, 472, 863
BshVI	ATCGAT	1 cut(s)	127
BslI	CCNNNNNNNGG	2 cut(s)	106, 512
BsnI	GGCC	3 cut(s)	457, 472, 863
Bsp119I	TTCGAA	1 cut(s)	56
Bsp143I	GATC	1 cut(s)	829
BspACI	CCGC	2 cut(s)	29, 338
BspANI	GGCC	3 cut(s)	457, 472, 863
BspCNI	CTCAG	2 cut(s)	487, 841
BspDI	ATCGAT	1 cut(s)	127
BspT104I	TTCGAA	1 cut(s)	56
BsrDI	GCAATG	1 cut(s)	541
BsrI	ACTGG	1 cut(s)	664
BssECI	CCNNGG	3 cut(s)	105, 473, 735
BssMI	GATC	1 cut(s)	829
BssT1I	CCWWGG	3 cut(s)	105, 473, 735
Bst4CI	ACNGT	1 cut(s)	580
BstBI	TTCGAA	1 cut(s)	56
BstC8I	GCNNGC	3 cut(s)	29, 409, 774
BstDEI	CTNAG	4 cut(s)	23, 184, 495, 849
BstF5I	GGATG	1 cut(s)	802
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	1 cut(s)	832
BstMBI	GATC	1 cut(s)	829
BstMWI	GCNNNNNNNGC	5 cut(s)	224, 377, 463, 623, 869
BstNSI	RCATGY	1 cut(s)	436
BstSFI	CTRYAG	2 cut(s)	240, 810
BstV1I	GCAGC	3 cut(s)	604, 665, 859
BstV2I	GAAGAC	4 cut(s)	6, 467, 511, 873
BstX2I	RGATCY	1 cut(s)	829
BstXI	CCANNNNNNTGG	1 cut(s)	112
BstYI	RGATCY	1 cut(s)	829
Bsu15I	ATCGAT	1 cut(s)	127
BsuRI	GGCC	3 cut(s)	457, 472, 863
BsuTUI	ATCGAT	1 cut(s)	127
BtsCI	GGATG	1 cut(s)	802
Cac8I	GCNNGC	3 cut(s)	29, 409, 774
CaiI	CAGNNNCTG	2 cut(s)	617, 659
CfoI	GCGC	1 cut(s)	7
Cfr13I	GGNCC	1 cut(s)	188
ClaI	ATCGAT	1 cut(s)	127
CseI	GACGC	2 cut(s)	472, 878
Csp6I	GTAC	2 cut(s)	270, 760
CviAII	CATG	1 cut(s)	433
CviQI	GTAC	2 cut(s)	270, 760
DdeI	CTNAG	4 cut(s)	23, 184, 495, 849
DpnI	GATC	1 cut(s)	831
DpnII	GATC	1 cut(s)	829
EaeI	YGGCCR	2 cut(s)	455, 861
Eco130I	CCWWGG	3 cut(s)	105, 473, 735
Eco47I	GGWCC	1 cut(s)	188
Eco57I	CTGAAG	3 cut(s)	505, 846, 867
EcoT14I	CCWWGG	3 cut(s)	105, 473, 735
ErhI	CCWWGG	3 cut(s)	105, 473, 735
FaeI	CATG	1 cut(s)	436
FaiI	YATR	9 cut(s)	84, 344, 366, 414, 434, 469, 563, 674, 812
FatI	CATG	1 cut(s)	432
FauI	CCCGC	1 cut(s)	36
FblI	GTMKAC	1 cut(s)	207
Fnu4HI	GCNGC	4 cut(s)	339, 618, 654, 873
FokI	GGATG	1 cut(s)	809
Fsp4HI	GCNGC	4 cut(s)	339, 618, 654, 873
FspBI	CTAG	3 cut(s)	165, 264, 372
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	4 cut(s)	339, 618, 654, 873
GsuI	CTGGAG	1 cut(s)	681
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	3 cut(s)	457, 472, 863
HgaI	GACGC	2 cut(s)	472, 878
HhaI	GCGC	1 cut(s)	7
Hin1II	CATG	1 cut(s)	436
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HincII	GTYRAC	3 cut(s)	208, 424, 558
HindII	GTYRAC	3 cut(s)	208, 424, 558
HinfI	GANTC	6 cut(s)	11, 36, 204, 544, 731, 745
HphI	GGTGA	3 cut(s)	328, 647, 754
Hpy166II	GTNNAC	3 cut(s)	208, 424, 558
Hpy188I	TCNGA	3 cut(s)	446, 750, 826
Hpy8I	GTNNAC	3 cut(s)	208, 424, 558
HpyAV	CCTTC	1 cut(s)	472
HpyCH4III	ACNGT	1 cut(s)	580
HpyCH4V	TGCA	7 cut(s)	118, 407, 432, 620, 653, 776, 800
HpyF10VI	GCNNNNNNNGC	5 cut(s)	224, 377, 463, 623, 869
HpyF3I	CTNAG	4 cut(s)	23, 184, 495, 849
Hsp92II	CATG	1 cut(s)	436
HspAI	GCGC	1 cut(s)	5
Kzo9I	GATC	1 cut(s)	829
Lsp1109I	GCAGC	3 cut(s)	604, 665, 859
LweI	GCATC	2 cut(s)	185, 787
MaeI	CTAG	3 cut(s)	165, 264, 372
MaeIII	GTNAC	2 cut(s)	541, 607
MalI	GATC	1 cut(s)	831
MboI	GATC	1 cut(s)	829
MboII	GAAGA	6 cut(s)	6, 472, 511, 839, 873, 878
MflI	RGATCY	1 cut(s)	829
MluCI	AATT	5 cut(s)	18, 94, 151, 675, 702
MlyI	GAGTC	3 cut(s)	20, 213, 538
MnlI	CCTC	8 cut(s)	171, 193, 300, 385, 607, 691, 733, 772
MroXI	GAANNNNTTC	1 cut(s)	95
MseI	TTAA	1 cut(s)	892
MslI	CAYNNNNRTG	2 cut(s)	437, 767
MwoI	GCNNNNNNNGC	5 cut(s)	224, 377, 463, 623, 869
NdeII	GATC	1 cut(s)	829
NlaIII	CATG	1 cut(s)	436
NmuCI	GTSAC	1 cut(s)	541
NspI	RCATGY	1 cut(s)	436
NspV	TTCGAA	1 cut(s)	56
PdmI	GAANNNNTTC	1 cut(s)	95
PfeI	GAWTC	3 cut(s)	36, 731, 745
PkrI	GCNGC	4 cut(s)	340, 619, 655, 874
PleI	GAGTC	3 cut(s)	19, 212, 538
PpsI	GAGTC	3 cut(s)	19, 212, 538
PspPI	GGNCC	1 cut(s)	188
PstNI	CAGNNNCTG	2 cut(s)	617, 659
PsuI	RGATCY	1 cut(s)	829
RsaI	GTAC	2 cut(s)	271, 761
RsaNI	GTAC	2 cut(s)	270, 760
RseI	CAYNNNNRTG	2 cut(s)	437, 767
SalI	GTCGAC	1 cut(s)	206
SaqAI	TTAA	1 cut(s)	892
SatI	GCNGC	4 cut(s)	339, 618, 654, 873
Sau3AI	GATC	1 cut(s)	829
Sau96I	GGNCC	1 cut(s)	188
SchI	GAGTC	3 cut(s)	20, 213, 538
SfaNI	GCATC	2 cut(s)	185, 787
SfcI	CTRYAG	2 cut(s)	240, 810
SfuI	TTCGAA	1 cut(s)	56
SinI	GGWCC	1 cut(s)	188
SmiMI	CAYNNNNRTG	2 cut(s)	437, 767
SmlI	CTYRAG	1 cut(s)	8
SmoI	CTYRAG	1 cut(s)	8
Sse9I	AATT	5 cut(s)	18, 94, 151, 675, 702
SsiI	CCGC	2 cut(s)	29, 338
SspI	AATATT	2 cut(s)	589, 717
SspMI	CTAG	3 cut(s)	165, 264, 372
StyI	CCWWGG	3 cut(s)	105, 473, 735
TaaI	ACNGT	1 cut(s)	580
TaqI	TCGA	4 cut(s)	56, 127, 139, 207
TasI	AATT	5 cut(s)	18, 94, 151, 675, 702
TauI	GCSGC	1 cut(s)	341
TfiI	GAWTC	3 cut(s)	36, 731, 745
Tru1I	TTAA	1 cut(s)	892
Tru9I	TTAA	1 cut(s)	892
TseFI	GTSAC	1 cut(s)	541
TseI	GCWGC	3 cut(s)	617, 653, 872
Tsp45I	GTSAC	1 cut(s)	541
TspDTI	ATGAA	2 cut(s)	28, 738
VpaK11BI	GGWCC	1 cut(s)	188
XapI	RAATTY	1 cut(s)	94
XceI	RCATGY	1 cut(s)	436
XcmI	CCANNNNNNNNNTGG	1 cut(s)	109
XmiI	GTMKAC	1 cut(s)	207
XmnI	GAANNNNTTC	1 cut(s)	95
XspI	CTAG	3 cut(s)	165, 264, 372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.