Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008148.1

Orthogroup ID

OG0007612

Physical Location & Seq

Genomic Coordinates Reverse (-)

81091 .. 83014

Gene Structure 1924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008148.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

atggcgcttgagtcttcaattctaagcccgcccagattcaattctggttcgaaatcgttgggtttcttgtattaccataagcagaagaatttccccaccaatgcttcggtgcaaagtaatcgatacccaattcgattggtgtcgaattgcattggcagtagtgattttcggaggttcttaggtccaaaatgcgagggagttgacttgtttgccaatagagctcatttgagagctgtagcagctatggtttgtggggttttggtgtatgggtctaggagagcttttgctgtgggtgtggtcaatgcaagctatggggttgttgacaagtgcatattgatgttcggaaatgcttggccgaagacgctatggccttggaaggtgcgtgagttatctgagaaagagcctgaaaatggcgtctttagattgcttcgcaatgatgtgacttggttcttgacaaccatacttattggcacagctgttgtcaatattggagcaactgctttagttacagaggctgcaacagcgatatttggtgaagctggtgttggtgcagcaactggagtaatgactgttcttattttgctcctcaccgaaataactcccaaaagtgtttctgttcacagtccgcagaagttgctaggtttgtgtgaaagaaacctagaggctacatccagtggaccattgttgctcccccatccatccactgaagattgtactgttaatggcttctacaaacccaaaaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS CorC_HlyC DUF21

Protein Analysis

248

Amino Acids

26.92

Weight (kDa)

9.39

Isoelectric Point (pI)

37.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007612)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55930 AT1G55930 AT3G13070
malus_domestica	MD03G1188400.v1.1 MD11G1204000.v1.1
prunus_persica	Prupe.4G235000_v2.0.a1 Prupe.4G235000_v2.0.a1 Prupe.4G235000_v2.0.a1 Prupe.4G235000_v2.0.a1
pyrus_communis	pycom03g14090 pycom11g17690 pycom11g17700
rosa_chinensis	RchiOBHm_Chr1g0355491 RchiOBHm_Chr2g0115171 RchiOBHm_Chr5g0043101
rosa_laevigata	RLG00000031847
rosa_multiflora	Rmu_sc0001714.1_g000010 Rmu_sc0002079.1_g000010 Rmu_sc0008148.1_g000026
rosa_roxburghii	Rroxscaffold_1G00037630 Rroxscaffold_1G00037750
rosa_samantha	Rh2CG257200 Rh5BG295700
rosa_wichuraiana	Rw2G047580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	29, 626
AcoI	YGGCCR	1 cut(s)	353
AcsI	RAATTY	1 cut(s)	88
AcuI	CTGAAG	1 cut(s)	726
AcyI	GRCGYC	1 cut(s)	414
AfaI	GTAC	1 cut(s)	715
AfiI	CCNNNNNNNGG	1 cut(s)	410
AgsI	TTSAA	2 cut(s)	18, 40
AjuI	GAANNNNNNNTTGG	2 cut(s)	528, 560
AluBI	AGCT	7 cut(s)	221, 233, 242, 281, 309, 476, 539
AluI	AGCT	7 cut(s)	221, 233, 242, 281, 309, 476, 539
Alw21I	GWGCWC	1 cut(s)	223
AlwNI	CAGNNNCTG	2 cut(s)	515, 557
AoxI	GGCC	2 cut(s)	353, 368
ApeKI	GCWGC	3 cut(s)	239, 515, 551
ApoI	RAATTY	1 cut(s)	88
Asp700I	GAANNNNTTC	1 cut(s)	89
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	2 cut(s)	182, 677
AsuHPI	GGTGA	2 cut(s)	545, 580
AsuII	TTCGAA	1 cut(s)	50
AvaII	GGWCC	2 cut(s)	182, 677
BanII	GRGCYC	1 cut(s)	223
BbsI	GAAGAC	2 cut(s)	6, 365
Bbv12I	GWGCWC	1 cut(s)	223
BbvI	GCAGC	3 cut(s)	251, 502, 563
BccI	CCATC	2 cut(s)	702, 706
BcgI	CGANNNNNNTGC	2 cut(s)	101, 135
BfaI	CTAG	3 cut(s)	273, 638, 659
BfmI	CTRYAG	1 cut(s)	234
BfoI	RGCGCY	1 cut(s)	8
BisI	GCNGC	3 cut(s)	240, 516, 552
BlsI	GCNGC	3 cut(s)	241, 517, 553
Bme18I	GGWCC	2 cut(s)	182, 677
BmgT120I	GGNCC	2 cut(s)	182, 677
BpiI	GAAGAC	2 cut(s)	6, 365
BpmI	CTGGAG	1 cut(s)	579
Bpu14I	TTCGAA	1 cut(s)	50
BpuEI	CTTGAG	1 cut(s)	29
Bsa29I	ATCGAT	1 cut(s)	121
BsaHI	GRCGYC	1 cut(s)	414
BsaJI	CCNNGG	1 cut(s)	371
Bsc4I	CCNNNNNNNGG	1 cut(s)	410
Bse1I	ACTGG	2 cut(s)	562, 672
Bse3DI	GCAATG	1 cut(s)	439
BseCI	ATCGAT	1 cut(s)	121
BseDI	CCNNGG	1 cut(s)	371
BseGI	GGATG	3 cut(s)	668, 694, 698
BseLI	CCNNNNNNNGG	1 cut(s)	410
BseMI	GCAATG	1 cut(s)	439
BseMII	CTCAG	1 cut(s)	384
BseNI	ACTGG	2 cut(s)	562, 672
BseRI	GAGGAG	1 cut(s)	575
BseXI	GCAGC	3 cut(s)	251, 502, 563
BsgI	GTGCAG	1 cut(s)	570
BshFI	GGCC	2 cut(s)	355, 370
BshVI	ATCGAT	1 cut(s)	121
BsiHKAI	GWGCWC	1 cut(s)	223
BslI	CCNNNNNNNGG	1 cut(s)	410
BsnI	GGCC	2 cut(s)	355, 370
Bsp119I	TTCGAA	1 cut(s)	50
Bsp1286I	GDGCHC	1 cut(s)	223
BspACI	CCGC	2 cut(s)	29, 626
BspANI	GGCC	2 cut(s)	355, 370
BspCNI	CTCAG	1 cut(s)	385
BspDI	ATCGAT	1 cut(s)	121
BspT104I	TTCGAA	1 cut(s)	50
BsrDI	GCAATG	1 cut(s)	439
BsrI	ACTGG	2 cut(s)	562, 672
BssECI	CCNNGG	1 cut(s)	371
BssNI	GRCGYC	1 cut(s)	414
BssT1I	CCWWGG	1 cut(s)	371
Bst4CI	ACNGT	3 cut(s)	571, 623, 718
BstACI	GRCGYC	1 cut(s)	414
BstAPI	GCANNNNNTGC	1 cut(s)	634
BstBI	TTCGAA	1 cut(s)	50
BstC8I	GCNNGC	2 cut(s)	29, 307
BstDEI	CTNAG	3 cut(s)	23, 178, 393
BstF5I	GGATG	3 cut(s)	668, 694, 698
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstMWI	GCNNNNNNNGC	5 cut(s)	218, 239, 361, 521, 634
BstSFI	CTRYAG	1 cut(s)	234
BstV1I	GCAGC	3 cut(s)	251, 502, 563
BstV2I	GAAGAC	2 cut(s)	6, 365
Bsu15I	ATCGAT	1 cut(s)	121
BsuRI	GGCC	2 cut(s)	355, 370
BsuTUI	ATCGAT	1 cut(s)	121
BtsCI	GGATG	3 cut(s)	668, 694, 698
BtsIMutI	CAGTG	2 cut(s)	679, 702
Cac8I	GCNNGC	2 cut(s)	29, 307
CaiI	CAGNNNCTG	2 cut(s)	515, 557
CfoI	GCGC	1 cut(s)	7
Cfr13I	GGNCC	2 cut(s)	182, 677
ClaI	ATCGAT	1 cut(s)	121
CseI	GACGC	2 cut(s)	370, 403
Csp6I	GTAC	1 cut(s)	714
CviQI	GTAC	1 cut(s)	714
DdeI	CTNAG	3 cut(s)	23, 178, 393
EaeI	YGGCCR	1 cut(s)	353
Ecl136II	GAGCTC	1 cut(s)	221
Eco130I	CCWWGG	1 cut(s)	371
Eco24I	GRGCYC	1 cut(s)	223
Eco47I	GGWCC	2 cut(s)	182, 677
Eco53kI	GAGCTC	1 cut(s)	221
Eco57I	CTGAAG	1 cut(s)	726
EcoICRI	GAGCTC	1 cut(s)	221
EcoT14I	CCWWGG	1 cut(s)	371
EcoT38I	GRGCYC	1 cut(s)	223
ErhI	CCWWGG	1 cut(s)	371
FaiI	YATR	7 cut(s)	78, 245, 267, 312, 332, 367, 461
FauI	CCCGC	1 cut(s)	36
Fnu4HI	GCNGC	3 cut(s)	240, 516, 552
FokI	GGATG	3 cut(s)	655, 681, 685
FriOI	GRGCYC	1 cut(s)	223
Fsp4HI	GCNGC	3 cut(s)	240, 516, 552
FspBI	CTAG	3 cut(s)	273, 638, 659
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	3 cut(s)	240, 516, 552
GsuI	CTGGAG	1 cut(s)	579
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	2 cut(s)	355, 370
HgaI	GACGC	2 cut(s)	370, 403
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	1 cut(s)	414
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HincII	GTYRAC	2 cut(s)	202, 322
HindII	GTYRAC	2 cut(s)	202, 322
HinfI	GANTC	2 cut(s)	11, 36
HphI	GGTGA	2 cut(s)	545, 580
Hpy166II	GTNNAC	4 cut(s)	202, 322, 619, 677
Hpy188I	TCNGA	3 cut(s)	171, 344, 394
Hpy188III	TCNNGA	1 cut(s)	451
Hpy8I	GTNNAC	4 cut(s)	202, 322, 619, 677
HpyAV	CCTTC	1 cut(s)	370
HpyCH4III	ACNGT	3 cut(s)	571, 623, 718
HpyCH4V	TGCA	6 cut(s)	112, 150, 305, 330, 518, 551
HpyF10VI	GCNNNNNNNGC	5 cut(s)	218, 239, 361, 521, 634
HpyF3I	CTNAG	3 cut(s)	23, 178, 393
Hsp92I	GRCGYC	1 cut(s)	414
HspAI	GCGC	1 cut(s)	5
LmnI	GCTCC	3 cut(s)	491, 588, 693
LpnPI	CCDG	6 cut(s)	30, 46, 417, 525, 543, 685
Lsp1109I	GCAGC	3 cut(s)	251, 502, 563
MaeI	CTAG	3 cut(s)	273, 638, 659
MaeIII	GTNAC	2 cut(s)	439, 505
MboII	GAAGA	4 cut(s)	6, 97, 370, 719
MhlI	GDGCHC	1 cut(s)	223
MluCI	AATT	5 cut(s)	18, 40, 88, 129, 145
MlyI	GAGTC	1 cut(s)	20
MnlI	CCTC	5 cut(s)	165, 187, 505, 596, 655
MroXI	GAANNNNTTC	1 cut(s)	89
MseI	TTAA	1 cut(s)	720
MslI	CAYNNNNRTG	1 cut(s)	335
MspA1I	CMGCKG	1 cut(s)	476
MwoI	GCNNNNNNNGC	5 cut(s)	218, 239, 361, 521, 634
NmuCI	GTSAC	1 cut(s)	439
NspV	TTCGAA	1 cut(s)	50
PdmI	GAANNNNTTC	1 cut(s)	89
PfeI	GAWTC	1 cut(s)	36
PkrI	GCNGC	3 cut(s)	241, 517, 553
PleI	GAGTC	1 cut(s)	19
PpsI	GAGTC	1 cut(s)	19
Psp124BI	GAGCTC	1 cut(s)	223
PspPI	GGNCC	2 cut(s)	182, 677
PsrI	GAACNNNNNNTAC	2 cut(s)	555, 587
PstNI	CAGNNNCTG	2 cut(s)	515, 557
PvuII	CAGCTG	1 cut(s)	476
RsaI	GTAC	1 cut(s)	715
RsaNI	GTAC	1 cut(s)	714
RseI	CAYNNNNRTG	1 cut(s)	335
SacI	GAGCTC	1 cut(s)	223
SaqAI	TTAA	1 cut(s)	720
SatI	GCNGC	3 cut(s)	240, 516, 552
Sau96I	GGNCC	2 cut(s)	182, 677
SchI	GAGTC	1 cut(s)	20
SduI	GDGCHC	1 cut(s)	223
SfcI	CTRYAG	1 cut(s)	234
SfuI	TTCGAA	1 cut(s)	50
SinI	GGWCC	2 cut(s)	182, 677
SmiMI	CAYNNNNRTG	1 cut(s)	335
SmlI	CTYRAG	1 cut(s)	8
SmoI	CTYRAG	1 cut(s)	8
Sse9I	AATT	5 cut(s)	18, 40, 88, 129, 145
SsiI	CCGC	2 cut(s)	29, 626
SspI	AATATT	1 cut(s)	487
SspMI	CTAG	3 cut(s)	273, 638, 659
SstI	GAGCTC	1 cut(s)	223
StyI	CCWWGG	1 cut(s)	371
TaaI	ACNGT	3 cut(s)	571, 623, 718
TaqI	TCGA	4 cut(s)	50, 121, 133, 143
TasI	AATT	5 cut(s)	18, 40, 88, 129, 145
TatI	WGTACW	1 cut(s)	713
TfiI	GAWTC	1 cut(s)	36
Tru1I	TTAA	1 cut(s)	720
Tru9I	TTAA	1 cut(s)	720
TscAI	CASTG	2 cut(s)	679, 709
TseFI	GTSAC	1 cut(s)	439
TseI	GCWGC	3 cut(s)	239, 515, 551
Tsp45I	GTSAC	1 cut(s)	439
TspRI	CASTG	2 cut(s)	679, 709
VpaK11BI	GGWCC	2 cut(s)	182, 677
XapI	RAATTY	1 cut(s)	88
XmnI	GAANNNNTTC	1 cut(s)	89
XspI	CTAG	3 cut(s)	273, 638, 659

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.