Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0007612

Physical Location & Seq

Genomic Coordinates Forward (+)

54804463 .. 54810151

Gene Structure 5689 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00037630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGCGTGCAGAGGGAGTATTTGATGTGGATGCAAACACATCTATAGACCAGCTCTCTGAAGATCTAAATGTGAAAATGCTCGAGCAGAAGAATTTCCCCACCAAGGTTTTGTTGCAAAATAATCGATACCCATTTCGATTGGTGTCGAATTGCATTGACACTAGCGATTTTGGGAGGTTCTTTGGTCCAAGATGCAAGGGAGTTGACTTGTTTGCGAATAGAGCTCGTTTGAGAGCTGTAGGTAAAGATAGTGAGAGTTCTAGTGGTACAAATGCTGGTTCAGGTTCGAGTTTTGATTTTGTAGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS CorC_HlyC DUF21

Protein Analysis

102

Amino Acids

11.23

Weight (kDa)

6.19

Isoelectric Point (pI)

25.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007612)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55930 AT1G55930 AT3G13070
malus_domestica	MD03G1188400.v1.1 MD11G1204000.v1.1
prunus_persica	Prupe.4G235000_v2.0.a1 Prupe.4G235000_v2.0.a1 Prupe.4G235000_v2.0.a1 Prupe.4G235000_v2.0.a1
pyrus_communis	pycom03g14090 pycom11g17690 pycom11g17700
rosa_chinensis	RchiOBHm_Chr1g0355491 RchiOBHm_Chr2g0115171 RchiOBHm_Chr5g0043101
rosa_laevigata	RLG00000031847
rosa_multiflora	Rmu_sc0001714.1_g000010 Rmu_sc0002079.1_g000010 Rmu_sc0008148.1_g000026
rosa_roxburghii	Rroxscaffold_1G00037630 Rroxscaffold_1G00037750
rosa_samantha	Rh2CG257200 Rh5BG295700
rosa_wichuraiana	Rw2G047580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	91
AcuI	CTGAAG	1 cut(s)	78
AfaI	GTAC	1 cut(s)	268
AfiI	CCNNNNNNNGG	1 cut(s)	103
AluBI	AGCT	3 cut(s)	52, 224, 236
AluI	AGCT	3 cut(s)	52, 224, 236
Alw21I	GWGCWC	1 cut(s)	226
Ama87I	CYCGRG	1 cut(s)	80
ApoI	RAATTY	1 cut(s)	91
Asp700I	GAANNNNTTC	1 cut(s)	92
AspS9I	GGNCC	1 cut(s)	185
AvaI	CYCGRG	1 cut(s)	80
AvaII	GGWCC	1 cut(s)	185
BanII	GRGCYC	1 cut(s)	226
Bbv12I	GWGCWC	1 cut(s)	226
BcgI	CGANNNNNNTGC	2 cut(s)	104, 138
BfaI	CTAG	2 cut(s)	162, 261
BfmI	CTRYAG	2 cut(s)	42, 237
BglII	AGATCT	1 cut(s)	61
Bme18I	GGWCC	1 cut(s)	185
BmeT110I	CYCGRG	1 cut(s)	80
BmgT120I	GGNCC	1 cut(s)	185
BmsI	GCATC	2 cut(s)	19, 182
Bsa29I	ATCGAT	1 cut(s)	124
BsaJI	CCNNGG	1 cut(s)	102
Bsc4I	CCNNNNNNNGG	1 cut(s)	103
BseCI	ATCGAT	1 cut(s)	124
BseDI	CCNNGG	1 cut(s)	102
BseGI	GGATG	1 cut(s)	34
BseLI	CCNNNNNNNGG	1 cut(s)	103
BsgI	GTGCAG	1 cut(s)	27
BshVI	ATCGAT	1 cut(s)	124
BsiHKAI	GWGCWC	1 cut(s)	226
BsiHKCI	CYCGRG	1 cut(s)	80
BslI	CCNNNNNNNGG	1 cut(s)	103
BsoBI	CYCGRG	1 cut(s)	80
Bsp1286I	GDGCHC	1 cut(s)	226
Bsp143I	GATC	1 cut(s)	61
BspDI	ATCGAT	1 cut(s)	124
BssECI	CCNNGG	1 cut(s)	102
BssMI	GATC	1 cut(s)	61
BssT1I	CCWWGG	1 cut(s)	102
BstC8I	GCNNGC	1 cut(s)	6
BstF5I	GGATG	1 cut(s)	34
BstKTI	GATC	1 cut(s)	64
BstMBI	GATC	1 cut(s)	61
BstMWI	GCNNNNNNNGC	1 cut(s)	221
BstSFI	CTRYAG	2 cut(s)	42, 237
BstX2I	RGATCY	1 cut(s)	61
BstYI	RGATCY	1 cut(s)	61
Bsu15I	ATCGAT	1 cut(s)	124
BsuTUI	ATCGAT	1 cut(s)	124
BtsCI	GGATG	1 cut(s)	34
Cac8I	GCNNGC	1 cut(s)	6
Cfr13I	GGNCC	1 cut(s)	185
ClaI	ATCGAT	1 cut(s)	124
Csp6I	GTAC	1 cut(s)	267
CviJI	RGCY	3 cut(s)	52, 224, 236
CviKI_1	RGCY	3 cut(s)	52, 224, 236
CviQI	GTAC	1 cut(s)	267
DpnI	GATC	1 cut(s)	63
DpnII	GATC	1 cut(s)	61
Ecl136II	GAGCTC	1 cut(s)	224
Eco130I	CCWWGG	1 cut(s)	102
Eco24I	GRGCYC	1 cut(s)	226
Eco47I	GGWCC	1 cut(s)	185
Eco53kI	GAGCTC	1 cut(s)	224
Eco57I	CTGAAG	1 cut(s)	78
Eco88I	CYCGRG	1 cut(s)	80
EcoICRI	GAGCTC	1 cut(s)	224
EcoT14I	CCWWGG	1 cut(s)	102
EcoT38I	GRGCYC	1 cut(s)	226
ErhI	CCWWGG	1 cut(s)	102
FaiI	YATR	1 cut(s)	44
FokI	GGATG	1 cut(s)	41
FriOI	GRGCYC	1 cut(s)	226
FspBI	CTAG	2 cut(s)	162, 261
HincII	GTYRAC	1 cut(s)	205
HindII	GTYRAC	1 cut(s)	205
Hpy166II	GTNNAC	1 cut(s)	205
Hpy188I	TCNGA	1 cut(s)	58
Hpy8I	GTNNAC	1 cut(s)	205
HpyCH4V	TGCA	5 cut(s)	8, 32, 115, 153, 195
HpyF10VI	GCNNNNNNNGC	1 cut(s)	221
Kzo9I	GATC	1 cut(s)	61
LpnPI	CCDG	3 cut(s)	62, 261, 267
LweI	GCATC	2 cut(s)	19, 182
MaeI	CTAG	2 cut(s)	162, 261
MalI	GATC	1 cut(s)	63
MboI	GATC	1 cut(s)	61
MboII	GAAGA	2 cut(s)	71, 100
MflI	RGATCY	1 cut(s)	61
MhlI	GDGCHC	1 cut(s)	226
MluCI	AATT	2 cut(s)	91, 148
MnlI	CCTC	2 cut(s)	4, 168
MroXI	GAANNNNTTC	1 cut(s)	92
MwoI	GCNNNNNNNGC	1 cut(s)	221
NdeII	GATC	1 cut(s)	61
PaeR7I	CTCGAG	1 cut(s)	80
PdmI	GAANNNNTTC	1 cut(s)	92
Psp124BI	GAGCTC	1 cut(s)	226
PspPI	GGNCC	1 cut(s)	185
PspXI	VCTCGAGB	1 cut(s)	80
PsuI	RGATCY	1 cut(s)	61
RsaI	GTAC	1 cut(s)	268
RsaNI	GTAC	1 cut(s)	267
SacI	GAGCTC	1 cut(s)	226
Sau3AI	GATC	1 cut(s)	61
Sau96I	GGNCC	1 cut(s)	185
SduI	GDGCHC	1 cut(s)	226
SetI	ASST	7 cut(s)	54, 108, 179, 226, 238, 244, 286
SfaNI	GCATC	2 cut(s)	19, 182
SfcI	CTRYAG	2 cut(s)	42, 237
Sfr274I	CTCGAG	1 cut(s)	80
SinI	GGWCC	1 cut(s)	185
SlaI	CTCGAG	1 cut(s)	80
SmlI	CTYRAG	1 cut(s)	80
SmoI	CTYRAG	1 cut(s)	80
Sse9I	AATT	2 cut(s)	91, 148
SspMI	CTAG	2 cut(s)	162, 261
SstI	GAGCTC	1 cut(s)	226
StyI	CCWWGG	1 cut(s)	102
TaqI	TCGA	5 cut(s)	81, 124, 136, 146, 287
TasI	AATT	2 cut(s)	91, 148
VpaK11BI	GGWCC	1 cut(s)	185
XapI	RAATTY	1 cut(s)	91
XhoI	CTCGAG	1 cut(s)	80
XmnI	GAANNNNTTC	1 cut(s)	92
XspI	CTAG	2 cut(s)	162, 261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.