Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0007612

Physical Location & Seq

Genomic Coordinates Forward (+)

27421984 .. 27425314

Gene Structure 3331 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG257200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGCGCTTGAGTCTTCAATTCTAAGCCCACCCAGATTCATTTCTGGTTCGAAATCATTGAGTTTCTTGTATTACCATAAGCAGAAAAATTTCCCCACCAAGGTTTTGGTGCAAAGTAATCAATACCCATTTCGATTGGTGTCGAATTGCATTGGCACTAGCGATTTTGGGAGGTTCTTAGGTCCAAGATGCGAAGGAGTTGACTTGTTTGCTAATAGAGCTCGTTTGAGAGCTGTAGCTATGGTTTGTGGGCTTTTGGTGTGTGGGTCTAGGAGAGCTTTTGTTGTGGAGGGTGTGGTCAATGCAAGCTATGGGGTTGTTGACAAATGCATATTGATGTTCAGAAATGCTTGGCCGAAGACACTATGGCCTTGGAAGGTGCGTGAGTTGGCTGAGAAAGAGCCTGAAAATGGTGTCTTCAGATTGCTTCGCAATGATGTGACTCGGTTCTTGTCAACCATACTTATTGGCACAACTGTTGTCAATATTAAAGCAACTGCTTTAGTTACAGAGGCTGCAACAGTGATATTTGGTGAAGCTGGTGTTTGTGCAGCAACTGGAGTAATGACTGTTCCTATTTTGCTCCTCACTGAAATAACTCCCAAAAGTGTTTCTGTTCACAATCCCACAGAAGTTGCTAGGTTTGTGGTTAGGCCGGTGGCTTGGCTTTCATTGGTACTATATCCTGTCGGAAGAGTTGGTACATACCTATTAATGGGGATGCTGAAAATTCTAGGGTTGAAAGGAAGAAGTGAACCATATGTTACTGAAGAGGAGTTAAAACTGATGTTGCGAGCGGCAGAGTTAAGTAGGGCAATAGAAGAGGAAGAACAGGATATGATTGAAAATGTGTTGGAGATTAAAGATACGCATGTTAGAGAGGTGATGACACCTCTTGTAGATGTAGTTGCAATTGATGCCAGTGCAACGCTAATTGATTTTCACGACTTGGTGCCTGTTTTTGAGCAGCGTGTTGATAACATAGTAGGCATTGCATATGCAATGGATCTCCTGGTTTATGTTCAGAAGAGGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS CorC_HlyC DUF21

Protein Analysis

345

Amino Acids

38.38

Weight (kDa)

8.16

Isoelectric Point (pI)

41.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CNNM	PF01595	122 - 277	3.6e-35	Cyclin M transmembrane N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007612)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55930 AT1G55930 AT3G13070
malus_domestica	MD03G1188400.v1.1 MD11G1204000.v1.1
prunus_persica	Prupe.4G235000_v2.0.a1 Prupe.4G235000_v2.0.a1 Prupe.4G235000_v2.0.a1 Prupe.4G235000_v2.0.a1
pyrus_communis	pycom03g14090 pycom11g17690 pycom11g17700
rosa_chinensis	RchiOBHm_Chr1g0355491 RchiOBHm_Chr2g0115171 RchiOBHm_Chr5g0043101
rosa_laevigata	RLG00000031847
rosa_multiflora	Rmu_sc0001714.1_g000010 Rmu_sc0002079.1_g000010 Rmu_sc0008148.1_g000026
rosa_roxburghii	Rroxscaffold_1G00037630 Rroxscaffold_1G00037750
rosa_samantha	Rh2CG257200 Rh5BG295700
rosa_wichuraiana	Rw2G047580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	952
AccBSI	CCGCTC	1 cut(s)	797
AciI	CCGC	1 cut(s)	797
AclWI	GGATC	1 cut(s)	1014
AcoI	YGGCCR	1 cut(s)	353
AcsI	RAATTY	2 cut(s)	88, 729
AcuI	CTGAAG	2 cut(s)	403, 789
AfaI	GTAC	2 cut(s)	678, 703
AfiI	CCNNNNNNNGG	3 cut(s)	100, 410, 715
AgsI	TTSAA	3 cut(s)	18, 742, 845
AjnI	CCWGG	1 cut(s)	1011
AluBI	AGCT	6 cut(s)	221, 233, 239, 278, 309, 539
AluI	AGCT	6 cut(s)	221, 233, 239, 278, 309, 539
Alw21I	GWGCWC	1 cut(s)	223
AlwI	GGATC	1 cut(s)	1014
AlwNI	CAGNNNCTG	2 cut(s)	515, 557
AoxI	GGCC	3 cut(s)	353, 368, 653
ApeKI	GCWGC	3 cut(s)	515, 551, 967
ApoI	RAATTY	2 cut(s)	88, 729
AseI	ATTAAT	1 cut(s)	713
Asp700I	GAANNNNTTC	1 cut(s)	89
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	1 cut(s)	182
AsuHPI	GGTGA	2 cut(s)	545, 895
AsuII	TTCGAA	1 cut(s)	50
AvaII	GGWCC	1 cut(s)	182
BaeI	ACNNNNGTAYC	2 cut(s)	858, 891
BanI	GGYRCC	1 cut(s)	952
BanII	GRGCYC	1 cut(s)	223
BarI	GAAGNNNNNNTAC	2 cut(s)	685, 717
BbsI	GAAGAC	3 cut(s)	6, 365, 409
Bbv12I	GWGCWC	1 cut(s)	223
BbvI	GCAGC	3 cut(s)	502, 563, 979
BciT130I	CCWGG	1 cut(s)	1013
BfaI	CTAG	4 cut(s)	159, 270, 639, 734
BfmI	CTRYAG	1 cut(s)	234
BfoI	RGCGCY	1 cut(s)	8
BisI	GCNGC	4 cut(s)	516, 552, 798, 968
BlsI	GCNGC	4 cut(s)	517, 553, 799, 969
Bme1390I	CCNGG	1 cut(s)	1013
Bme18I	GGWCC	1 cut(s)	182
BmgT120I	GGNCC	1 cut(s)	182
BmiI	GGNNCC	1 cut(s)	954
BmrFI	CCNGG	1 cut(s)	1013
BmsI	GCATC	3 cut(s)	179, 711, 907
BpiI	GAAGAC	3 cut(s)	6, 365, 409
BpmI	CTGGAG	1 cut(s)	579
Bpu14I	TTCGAA	1 cut(s)	50
BpuEI	CTTGAG	1 cut(s)	29
BsaJI	CCNNGG	2 cut(s)	99, 371
Bsc4I	CCNNNNNNNGG	3 cut(s)	100, 410, 715
Bse118I	RCCGGY	1 cut(s)	655
Bse1I	ACTGG	2 cut(s)	562, 921
Bse3DI	GCAATG	3 cut(s)	439, 990, 1008
BseBI	CCWGG	1 cut(s)	1013
BseDI	CCNNGG	2 cut(s)	99, 371
BseGI	GGATG	1 cut(s)	726
BseLI	CCNNNNNNNGG	3 cut(s)	100, 410, 715
BseMI	GCAATG	3 cut(s)	439, 990, 1008
BseMII	CTCAG	1 cut(s)	384
BseNI	ACTGG	2 cut(s)	562, 921
BseRI	GAGGAG	2 cut(s)	575, 788
BseXI	GCAGC	3 cut(s)	502, 563, 979
BsgI	GTGCAG	1 cut(s)	570
BshFI	GGCC	3 cut(s)	355, 370, 655
BshNI	GGYRCC	1 cut(s)	952
BsiHKAI	GWGCWC	1 cut(s)	223
BsiSI	CCGG	1 cut(s)	656
BslI	CCNNNNNNNGG	3 cut(s)	100, 410, 715
BsnI	GGCC	3 cut(s)	355, 370, 655
Bsp119I	TTCGAA	1 cut(s)	50
Bsp1286I	GDGCHC	1 cut(s)	223
Bsp143I	GATC	1 cut(s)	1006
BspACI	CCGC	1 cut(s)	797
BspANI	GGCC	3 cut(s)	355, 370, 655
BspCNI	CTCAG	1 cut(s)	385
BspLI	GGNNCC	1 cut(s)	954
BspPI	GGATC	1 cut(s)	1014
BspT104I	TTCGAA	1 cut(s)	50
BspT107I	GGYRCC	1 cut(s)	952
BsrBI	CCGCTC	1 cut(s)	797
BsrDI	GCAATG	3 cut(s)	439, 990, 1008
BsrFI	RCCGGY	1 cut(s)	655
BsrI	ACTGG	2 cut(s)	562, 921
BssAI	RCCGGY	1 cut(s)	655
BssECI	CCNNGG	2 cut(s)	99, 371
BssMI	GATC	1 cut(s)	1006
BssT1I	CCWWGG	2 cut(s)	99, 371
Bst2UI	CCWGG	1 cut(s)	1013
Bst4CI	ACNGT	3 cut(s)	478, 523, 571
Bst6I	CTCTTC	4 cut(s)	688, 765, 816, 1022
BstAPI	GCANNNNNTGC	1 cut(s)	917
BstBI	TTCGAA	1 cut(s)	50
BstC8I	GCNNGC	2 cut(s)	307, 795
BstDEI	CTNAG	3 cut(s)	23, 178, 393
BstF5I	GGATG	1 cut(s)	726
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	1 cut(s)	1009
BstMBI	GATC	1 cut(s)	1006
BstMWI	GCNNNNNNNGC	2 cut(s)	218, 917
BstNI	CCWGG	1 cut(s)	1013
BstNSI	RCATGY	1 cut(s)	875
BstSCI	CCNGG	1 cut(s)	1011
BstSFI	CTRYAG	1 cut(s)	234
BstV1I	GCAGC	3 cut(s)	502, 563, 979
BstV2I	GAAGAC	3 cut(s)	6, 365, 409
BstX2I	RGATCY	1 cut(s)	1006
BstXI	CCANNNNNNTGG	1 cut(s)	106
BstYI	RGATCY	1 cut(s)	1006
BsuRI	GGCC	3 cut(s)	355, 370, 655
BtsCI	GGATG	1 cut(s)	726
BtsIMutI	CAGTG	3 cut(s)	528, 588, 928
Cac8I	GCNNGC	2 cut(s)	307, 795
CaiI	CAGNNNCTG	2 cut(s)	515, 557
CfoI	GCGC	1 cut(s)	7
Cfr10I	RCCGGY	1 cut(s)	655
Cfr13I	GGNCC	1 cut(s)	182
Csp6I	GTAC	2 cut(s)	677, 702
CspCI	CAANNNNNGTGG	2 cut(s)	616, 651
CviAII	CATG	1 cut(s)	872
CviQI	GTAC	2 cut(s)	677, 702
DdeI	CTNAG	3 cut(s)	23, 178, 393
DpnI	GATC	1 cut(s)	1008
DpnII	GATC	1 cut(s)	1006
EaeI	YGGCCR	1 cut(s)	353
Eam1104I	CTCTTC	4 cut(s)	688, 765, 816, 1022
EarI	CTCTTC	4 cut(s)	688, 765, 816, 1022
Ecl136II	GAGCTC	1 cut(s)	221
Eco130I	CCWWGG	2 cut(s)	99, 371
Eco24I	GRGCYC	1 cut(s)	223
Eco47I	GGWCC	1 cut(s)	182
Eco53kI	GAGCTC	1 cut(s)	221
Eco57I	CTGAAG	2 cut(s)	403, 789
EcoICRI	GAGCTC	1 cut(s)	221
EcoRII	CCWGG	1 cut(s)	1011
EcoT14I	CCWWGG	2 cut(s)	99, 371
EcoT22I	ATGCAT	1 cut(s)	332
EcoT38I	GRGCYC	1 cut(s)	223
ErhI	CCWWGG	2 cut(s)	99, 371
FaeI	CATG	1 cut(s)	875
FatI	CATG	1 cut(s)	871
FauNDI	CATATG	2 cut(s)	760, 997
Fnu4HI	GCNGC	4 cut(s)	516, 552, 798, 968
FokI	GGATG	1 cut(s)	733
FriOI	GRGCYC	1 cut(s)	223
Fsp4HI	GCNGC	4 cut(s)	516, 552, 798, 968
FspBI	CTAG	4 cut(s)	159, 270, 639, 734
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	4 cut(s)	516, 552, 798, 968
GsuI	CTGGAG	1 cut(s)	579
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	3 cut(s)	355, 370, 655
HapII	CCGG	1 cut(s)	656
HhaI	GCGC	1 cut(s)	7
Hin1II	CATG	1 cut(s)	875
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HincII	GTYRAC	3 cut(s)	202, 322, 456
HindII	GTYRAC	3 cut(s)	202, 322, 456
HinfI	GANTC	3 cut(s)	11, 36, 442
HpaII	CCGG	1 cut(s)	656
HphI	GGTGA	2 cut(s)	545, 895
Hpy166II	GTNNAC	5 cut(s)	202, 322, 456, 619, 755
Hpy188I	TCNGA	4 cut(s)	344, 422, 692, 1026
Hpy188III	TCNNGA	1 cut(s)	944
Hpy8I	GTNNAC	5 cut(s)	202, 322, 456, 619, 755
HpyAV	CCTTC	2 cut(s)	188, 370
HpyCH4III	ACNGT	3 cut(s)	478, 523, 571
HpyF10VI	GCNNNNNNNGC	2 cut(s)	218, 917
HpyF3I	CTNAG	3 cut(s)	23, 178, 393
Hsp92II	CATG	1 cut(s)	875
HspAI	GCGC	1 cut(s)	5
Kzo9I	GATC	1 cut(s)	1006
LmnI	GCTCC	1 cut(s)	588
Lsp1109I	GCAGC	3 cut(s)	502, 563, 979
LweI	GCATC	3 cut(s)	179, 711, 907
MaeI	CTAG	4 cut(s)	159, 270, 639, 734
MaeIII	GTNAC	3 cut(s)	439, 505, 763
MalI	GATC	1 cut(s)	1008
MbiI	CCGCTC	1 cut(s)	797
MboI	GATC	1 cut(s)	1006
MboII	GAAGA	8 cut(s)	6, 370, 409, 705, 759, 782, 833, 839
MfeI	CAATTG	1 cut(s)	912
MflI	RGATCY	1 cut(s)	1006
MhlI	GDGCHC	1 cut(s)	223
MluCI	AATT	6 cut(s)	18, 88, 145, 729, 912, 933
MlyI	GAGTC	2 cut(s)	20, 436
MmeI	TCCRAC	2 cut(s)	670, 834
MnlI	CCTC	9 cut(s)	165, 283, 505, 596, 766, 817, 874, 903, 1023
Mph1103I	ATGCAT	1 cut(s)	332
MroXI	GAANNNNTTC	1 cut(s)	89
MseI	TTAA	6 cut(s)	489, 713, 779, 806, 861, 1036
MslI	CAYNNNNRTG	1 cut(s)	335
MspI	CCGG	1 cut(s)	656
MspR9I	CCNGG	1 cut(s)	1013
MunI	CAATTG	1 cut(s)	912
MvaI	CCWGG	1 cut(s)	1013
MwoI	GCNNNNNNNGC	2 cut(s)	218, 917
NdeI	CATATG	2 cut(s)	760, 997
NdeII	GATC	1 cut(s)	1006
NlaIII	CATG	1 cut(s)	875
NlaIV	GGNNCC	1 cut(s)	954
NmuCI	GTSAC	1 cut(s)	439
NsiI	ATGCAT	1 cut(s)	332
NspI	RCATGY	1 cut(s)	875
NspV	TTCGAA	1 cut(s)	50
PdmI	GAANNNNTTC	1 cut(s)	89
PfeI	GAWTC	1 cut(s)	36
PkrI	GCNGC	4 cut(s)	517, 553, 799, 969
PleI	GAGTC	2 cut(s)	19, 436
PpsI	GAGTC	2 cut(s)	19, 436
PshBI	ATTAAT	1 cut(s)	713
Psp124BI	GAGCTC	1 cut(s)	223
Psp6I	CCWGG	1 cut(s)	1011
PspGI	CCWGG	1 cut(s)	1011
PspN4I	GGNNCC	1 cut(s)	954
PspPI	GGNCC	1 cut(s)	182
PsrI	GAACNNNNNNTAC	2 cut(s)	555, 587
PstNI	CAGNNNCTG	2 cut(s)	515, 557
PsuI	RGATCY	1 cut(s)	1006
RsaI	GTAC	2 cut(s)	678, 703
RsaNI	GTAC	2 cut(s)	677, 702
RseI	CAYNNNNRTG	1 cut(s)	335
SacI	GAGCTC	1 cut(s)	223
SaqAI	TTAA	6 cut(s)	489, 713, 779, 806, 861, 1036
SatI	GCNGC	4 cut(s)	516, 552, 798, 968
Sau3AI	GATC	1 cut(s)	1006
Sau96I	GGNCC	1 cut(s)	182
SchI	GAGTC	2 cut(s)	20, 436
ScrFI	CCNGG	1 cut(s)	1013
SduI	GDGCHC	1 cut(s)	223
SfaNI	GCATC	3 cut(s)	179, 711, 907
SfcI	CTRYAG	1 cut(s)	234
SfuI	TTCGAA	1 cut(s)	50
SinI	GGWCC	1 cut(s)	182
SmiMI	CAYNNNNRTG	1 cut(s)	335
SmlI	CTYRAG	1 cut(s)	8
SmoI	CTYRAG	1 cut(s)	8
Sse9I	AATT	6 cut(s)	18, 88, 145, 729, 912, 933
SsiI	CCGC	1 cut(s)	797
SspI	AATATT	1 cut(s)	487
SspMI	CTAG	4 cut(s)	159, 270, 639, 734
SstI	GAGCTC	1 cut(s)	223
StyD4I	CCNGG	1 cut(s)	1011
StyI	CCWWGG	2 cut(s)	99, 371
TaaI	ACNGT	3 cut(s)	478, 523, 571
TaqI	TCGA	3 cut(s)	50, 133, 143
TasI	AATT	6 cut(s)	18, 88, 145, 729, 912, 933
TauI	GCSGC	1 cut(s)	800
TfiI	GAWTC	1 cut(s)	36
Tru1I	TTAA	6 cut(s)	489, 713, 779, 806, 861, 1036
Tru9I	TTAA	6 cut(s)	489, 713, 779, 806, 861, 1036
TscAI	CASTG	3 cut(s)	528, 595, 928
TseFI	GTSAC	1 cut(s)	439
TseI	GCWGC	3 cut(s)	515, 551, 967
Tsp45I	GTSAC	1 cut(s)	439
TspDTI	ATGAA	2 cut(s)	28, 660
TspRI	CASTG	3 cut(s)	528, 595, 928
VpaK11BI	GGWCC	1 cut(s)	182
VspI	ATTAAT	1 cut(s)	713
XapI	RAATTY	2 cut(s)	88, 729
XceI	RCATGY	1 cut(s)	875
XcmI	CCANNNNNNNNNTGG	1 cut(s)	103
XmnI	GAANNNNTTC	1 cut(s)	89
XspI	CTAG	4 cut(s)	159, 270, 639, 734
Zsp2I	ATGCAT	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.