Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001714.1

Orthogroup ID

OG0007612

Physical Location & Seq

Genomic Coordinates Reverse (-)

36591 .. 43943

Gene Structure 7353 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001714.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1401 bp

atggcgcttgagtcttcaattctaagcccgcccagattcatttctggttcgaaatcattgagtttcttgtattaccataagcagaaaaatttccccaccaaggttttggtgcaaagtaatcaatacccatttcgattggtgtcgaattgcattggcactagcgattttgggtggttcttaggtccaagatgcgaaggagttgacttgtttgctaatagagctcgtttgagagctgtaggtaaagatagtgagagttctagtgtacaaatactatttcgggttcgagttttgattttgttagggtctaggagagcttttgctgtggagggtgtggtcaatgcaagctatggggttgttgacaaatgcatattgatgttcagaaatgcttggccgaagacgctatggccttggaaggtgcgtgagttggctgagaaagagcctgaaaatggtgtcttcagattgcttcgcaatgatgtgactcagttcttgtcaaccatacttattggcacaacagcaactgctttagttacagaggctgcaacagcgatatttggtgaagctggtgtttgtgcagcaactggagtaatggctgttcttattttgctcctcactgaaataactcccaaaagtgtttctgttcacaatcccacagaagttgctaggtttgtggttaggccggtggcttggctttcattggtactatatcctgtcggaagagttggggacgggttaagtggggcaatagaggaggaagaacaggatatgattgaaaatgtgttggagattaaagatacgcatgttagagaggtgatgacacctcttgtagatgtagttgcaattgatgccagtgcaacgctaattgattttcacgacttggtgcctgtttttgagcagcgtgttgataacatggtaggcattgcatgcaatggatctcctggattatgttcagaagatattcatgggaggcttgacaaagaacaaggggttatctgctttgattatcggcattgcaaatctgatataaagagcataaaggtgaggctaggggcgattaagaagaagaggaacgctgtgctgaagtatctgaagaataatgttgctgttcttctcaagattggccttgatattaatttcctggatccgagagttagggcaccaatggtgatcaaatttgactgtagtaggaggtatgaaggtagcgaaccaggtaggaatcagttttctcttctgggggccggttttgtacttttcccgcctgttatggtgactccgctgccggttatgggctcctgggattgggggcttcaaggtgtgcggcgatggttgctcggatttgagggctacgaaattagggtttcagggttagagcttcgtgctgataacatgtttaaggaaaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS CorC_HlyC DUF21

Protein Analysis

466

Amino Acids

51.84

Weight (kDa)

8.63

Isoelectric Point (pI)

37.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007612)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55930 AT1G55930 AT3G13070
malus_domestica	MD03G1188400.v1.1 MD11G1204000.v1.1
prunus_persica	Prupe.4G235000_v2.0.a1 Prupe.4G235000_v2.0.a1 Prupe.4G235000_v2.0.a1 Prupe.4G235000_v2.0.a1
pyrus_communis	pycom03g14090 pycom11g17690 pycom11g17700
rosa_chinensis	RchiOBHm_Chr1g0355491 RchiOBHm_Chr2g0115171 RchiOBHm_Chr5g0043101
rosa_laevigata	RLG00000031847
rosa_multiflora	Rmu_sc0001714.1_g000010 Rmu_sc0002079.1_g000010 Rmu_sc0008148.1_g000026
rosa_roxburghii	Rroxscaffold_1G00037630 Rroxscaffold_1G00037750
rosa_samantha	Rh2CG257200 Rh5BG295700
rosa_wichuraiana	Rw2G047580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	877, 1153
AciI	CCGC	4 cut(s)	29, 1253, 1271, 1315
AclWI	GGATC	3 cut(s)	937, 1133, 1146
AcoI	YGGCCR	1 cut(s)	389
AcsI	RAATTY	2 cut(s)	88, 1169
AcuI	CTGAAG	3 cut(s)	439, 1097, 1106
AfaI	GTAC	3 cut(s)	264, 699, 1245
AfiI	CCNNNNNNNGG	4 cut(s)	100, 446, 1283, 1296
AflIII	ACRYGT	1 cut(s)	1383
AgsI	TTSAA	3 cut(s)	18, 770, 1307
AjnI	CCWGG	4 cut(s)	934, 1134, 1204, 1289
AluBI	AGCT	6 cut(s)	221, 233, 314, 345, 560, 1369
AluI	AGCT	6 cut(s)	221, 233, 314, 345, 560, 1369
Alw21I	GWGCWC	1 cut(s)	223
AlwI	GGATC	3 cut(s)	937, 1133, 1146
AlwNI	CAGNNNCTG	3 cut(s)	518, 536, 578
AoxI	GGCC	5 cut(s)	389, 404, 674, 1117, 1233
ApeKI	GCWGC	4 cut(s)	536, 572, 892, 1273
ApoI	RAATTY	2 cut(s)	88, 1169
AseI	ATTAAT	1 cut(s)	1128
Asp700I	GAANNNNTTC	2 cut(s)	89, 954
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	2 cut(s)	182, 1233
AsuHPI	GGTGA	5 cut(s)	566, 820, 1048, 1174, 1276
AsuII	TTCGAA	1 cut(s)	50
AvaII	GGWCC	1 cut(s)	182
BaeGI	GKGCMC	1 cut(s)	1156
BaeI	ACNNNNGTAYC	2 cut(s)	783, 816
BamHI	GGATCC	1 cut(s)	1138
BanI	GGYRCC	2 cut(s)	877, 1153
BanII	GRGCYC	2 cut(s)	223, 1289
BbsI	GAAGAC	3 cut(s)	6, 401, 445
Bbv12I	GWGCWC	1 cut(s)	223
BbvI	GCAGC	4 cut(s)	523, 584, 904, 1260
BccI	CCATC	1 cut(s)	1314
BciT130I	CCWGG	4 cut(s)	936, 1136, 1206, 1291
BclI	TGATCA	1 cut(s)	1164
BfaI	CTAG	5 cut(s)	159, 258, 306, 660, 1043
BfmI	CTRYAG	2 cut(s)	234, 1177
BfoI	RGCGCY	1 cut(s)	8
BisI	GCNGC	5 cut(s)	537, 573, 893, 1274, 1316
BlsI	GCNGC	5 cut(s)	538, 574, 894, 1275, 1317
Bme1390I	CCNGG	4 cut(s)	936, 1136, 1206, 1291
Bme18I	GGWCC	1 cut(s)	182
BmgT120I	GGNCC	2 cut(s)	182, 1233
BmiI	GGNNCC	5 cut(s)	879, 1140, 1155, 1234, 1288
BmrFI	CCNGG	4 cut(s)	936, 1136, 1206, 1291
BmsI	GCATC	2 cut(s)	179, 832
BpiI	GAAGAC	3 cut(s)	6, 401, 445
BpmI	CTGGAG	1 cut(s)	600
Bpu14I	TTCGAA	1 cut(s)	50
BpuEI	CTTGAG	2 cut(s)	29, 1094
BsaJI	CCNNGG	3 cut(s)	99, 407, 1290
Bsc4I	CCNNNNNNNGG	4 cut(s)	100, 446, 1283, 1296
Bse118I	RCCGGY	3 cut(s)	676, 1235, 1276
Bse1I	ACTGG	2 cut(s)	583, 846
Bse3DI	GCAATG	4 cut(s)	475, 915, 931, 1006
BseBI	CCWGG	4 cut(s)	936, 1136, 1206, 1291
BseDI	CCNNGG	3 cut(s)	99, 407, 1290
BseLI	CCNNNNNNNGG	4 cut(s)	100, 446, 1283, 1296
BseMI	GCAATG	4 cut(s)	475, 915, 931, 1006
BseMII	CTCAG	2 cut(s)	420, 494
BseNI	ACTGG	2 cut(s)	583, 846
BseRI	GAGGAG	2 cut(s)	596, 761
BseSI	GKGCMC	1 cut(s)	1156
BseXI	GCAGC	4 cut(s)	523, 584, 904, 1260
BsgI	GTGCAG	1 cut(s)	591
BshFI	GGCC	5 cut(s)	391, 406, 676, 1119, 1235
BshNI	GGYRCC	2 cut(s)	877, 1153
BsiHKAI	GWGCWC	1 cut(s)	223
BsiSI	CCGG	3 cut(s)	677, 1236, 1277
BslFI	GGGAC	1 cut(s)	737
BslI	CCNNNNNNNGG	4 cut(s)	100, 446, 1283, 1296
BsmFI	GGGAC	1 cut(s)	737
BsnI	GGCC	5 cut(s)	391, 406, 676, 1119, 1235
Bsp119I	TTCGAA	1 cut(s)	50
Bsp1286I	GDGCHC	3 cut(s)	223, 1156, 1289
Bsp1407I	TGTACA	1 cut(s)	262
Bsp143I	GATC	3 cut(s)	929, 1138, 1164
BspACI	CCGC	4 cut(s)	29, 1253, 1271, 1315
BspANI	GGCC	5 cut(s)	391, 406, 676, 1119, 1235
BspCNI	CTCAG	2 cut(s)	421, 493
BspLI	GGNNCC	5 cut(s)	879, 1140, 1155, 1234, 1288
BspPI	GGATC	3 cut(s)	937, 1133, 1146
BspT104I	TTCGAA	1 cut(s)	50
BspT107I	GGYRCC	2 cut(s)	877, 1153
BsrDI	GCAATG	4 cut(s)	475, 915, 931, 1006
BsrFI	RCCGGY	3 cut(s)	676, 1235, 1276
BsrGI	TGTACA	1 cut(s)	262
BsrI	ACTGG	2 cut(s)	583, 846
BssAI	RCCGGY	3 cut(s)	676, 1235, 1276
BssECI	CCNNGG	3 cut(s)	99, 407, 1290
BssMI	GATC	3 cut(s)	929, 1138, 1164
BssT1I	CCWWGG	2 cut(s)	99, 407
Bst2UI	CCWGG	4 cut(s)	936, 1136, 1206, 1291
Bst4CI	ACNGT	1 cut(s)	1178
Bst6I	CTCTTC	3 cut(s)	709, 1055, 1230
BstAPI	GCANNNNNTGC	2 cut(s)	842, 921
BstAUI	TGTACA	1 cut(s)	262
BstBI	TTCGAA	1 cut(s)	50
BstC8I	GCNNGC	3 cut(s)	29, 343, 922
BstDEI	CTNAG	4 cut(s)	23, 178, 429, 480
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	3 cut(s)	932, 1141, 1167
BstMBI	GATC	3 cut(s)	929, 1138, 1164
BstMWI	GCNNNNNNNGC	6 cut(s)	218, 397, 542, 842, 921, 1324
BstNI	CCWGG	4 cut(s)	936, 1136, 1206, 1291
BstNSI	RCATGY	3 cut(s)	800, 924, 1387
BstSCI	CCNGG	4 cut(s)	934, 1134, 1204, 1289
BstSFI	CTRYAG	2 cut(s)	234, 1177
BstSLI	GKGCMC	1 cut(s)	1156
BstV1I	GCAGC	4 cut(s)	523, 584, 904, 1260
BstV2I	GAAGAC	3 cut(s)	6, 401, 445
BstX2I	RGATCY	2 cut(s)	929, 1138
BstXI	CCANNNNNNTGG	1 cut(s)	106
BstYI	RGATCY	2 cut(s)	929, 1138
BsuRI	GGCC	5 cut(s)	391, 406, 676, 1119, 1235
BtgZI	GCGATG	1 cut(s)	1333
BtsIMutI	CAGTG	2 cut(s)	609, 853
Cac8I	GCNNGC	3 cut(s)	29, 343, 922
CaiI	CAGNNNCTG	3 cut(s)	518, 536, 578
CfoI	GCGC	1 cut(s)	7
Cfr10I	RCCGGY	3 cut(s)	676, 1235, 1276
Cfr13I	GGNCC	2 cut(s)	182, 1233
CseI	GACGC	1 cut(s)	406
CsiI	ACCWGGT	1 cut(s)	1204
Csp6I	GTAC	3 cut(s)	263, 698, 1244
CspCI	CAANNNNNGTGG	2 cut(s)	637, 672
CviAII	CATG	5 cut(s)	797, 907, 921, 959, 1384
CviQI	GTAC	3 cut(s)	263, 698, 1244
DdeI	CTNAG	4 cut(s)	23, 178, 429, 480
DpnI	GATC	3 cut(s)	931, 1140, 1166
DpnII	GATC	3 cut(s)	929, 1138, 1164
EaeI	YGGCCR	1 cut(s)	389
Eam1104I	CTCTTC	3 cut(s)	709, 1055, 1230
EarI	CTCTTC	3 cut(s)	709, 1055, 1230
Ecl136II	GAGCTC	1 cut(s)	221
Eco130I	CCWWGG	2 cut(s)	99, 407
Eco24I	GRGCYC	2 cut(s)	223, 1289
Eco47I	GGWCC	1 cut(s)	182
Eco53kI	GAGCTC	1 cut(s)	221
Eco57I	CTGAAG	3 cut(s)	439, 1097, 1106
EcoICRI	GAGCTC	1 cut(s)	221
EcoRII	CCWGG	4 cut(s)	934, 1134, 1204, 1289
EcoT14I	CCWWGG	2 cut(s)	99, 407
EcoT22I	ATGCAT	1 cut(s)	368
EcoT38I	GRGCYC	2 cut(s)	223, 1289
ErhI	CCWWGG	2 cut(s)	99, 407
FaeI	CATG	5 cut(s)	800, 910, 924, 962, 1387
FaqI	GGGAC	1 cut(s)	737
FatI	CATG	5 cut(s)	796, 906, 920, 958, 1383
FauI	CCCGC	2 cut(s)	36, 1260
FbaI	TGATCA	1 cut(s)	1164
Fnu4HI	GCNGC	5 cut(s)	537, 573, 893, 1274, 1316
FriOI	GRGCYC	2 cut(s)	223, 1289
Fsp4HI	GCNGC	5 cut(s)	537, 573, 893, 1274, 1316
FspBI	CTAG	5 cut(s)	159, 258, 306, 660, 1043
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	5 cut(s)	537, 573, 893, 1274, 1316
GsuI	CTGGAG	1 cut(s)	600
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	5 cut(s)	391, 406, 676, 1119, 1235
HapII	CCGG	3 cut(s)	677, 1236, 1277
HgaI	GACGC	1 cut(s)	406
HhaI	GCGC	1 cut(s)	7
Hin1II	CATG	5 cut(s)	800, 910, 924, 962, 1387
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HincII	GTYRAC	3 cut(s)	202, 358, 492
HindII	GTYRAC	3 cut(s)	202, 358, 492
HinfI	GANTC	5 cut(s)	11, 36, 478, 1213, 1267
HpaII	CCGG	3 cut(s)	677, 1236, 1277
HphI	GGTGA	5 cut(s)	566, 820, 1048, 1174, 1276
Hpy166II	GTNNAC	5 cut(s)	202, 263, 358, 492, 640
Hpy188I	TCNGA	8 cut(s)	380, 458, 713, 949, 1018, 1086, 1143, 1331
Hpy188III	TCNNGA	2 cut(s)	869, 1111
Hpy8I	GTNNAC	5 cut(s)	202, 263, 358, 492, 640
HpyAV	CCTTC	3 cut(s)	188, 406, 1187
HpyCH4III	ACNGT	1 cut(s)	1178
HpyF10VI	GCNNNNNNNGC	6 cut(s)	218, 397, 542, 842, 921, 1324
HpyF3I	CTNAG	4 cut(s)	23, 178, 429, 480
Hsp92II	CATG	5 cut(s)	800, 910, 924, 962, 1387
HspAI	GCGC	1 cut(s)	5
Ksp22I	TGATCA	1 cut(s)	1164
Kzo9I	GATC	3 cut(s)	929, 1138, 1164
LmnI	GCTCC	2 cut(s)	609, 1292
Lsp1109I	GCAGC	4 cut(s)	523, 584, 904, 1260
LweI	GCATC	2 cut(s)	179, 832
MabI	ACCWGGT	1 cut(s)	1204
MaeI	CTAG	5 cut(s)	159, 258, 306, 660, 1043
MaeIII	GTNAC	3 cut(s)	475, 526, 1264
MalI	GATC	3 cut(s)	931, 1140, 1166
MboI	GATC	3 cut(s)	929, 1138, 1164
MfeI	CAATTG	1 cut(s)	837
MflI	RGATCY	2 cut(s)	929, 1138
MhlI	GDGCHC	3 cut(s)	223, 1156, 1289
MluCI	AATT	8 cut(s)	18, 88, 145, 837, 858, 1129, 1169, 1347
MlyI	GAGTC	3 cut(s)	20, 472, 1261
MmeI	TCCRAC	2 cut(s)	691, 759
Mph1103I	ATGCAT	1 cut(s)	368
MroXI	GAANNNNTTC	2 cut(s)	89, 954
MseI	TTAA	5 cut(s)	731, 786, 1053, 1128, 1389
MslI	CAYNNNNRTG	2 cut(s)	371, 1034
MspA1I	CMGCKG	1 cut(s)	1273
MspI	CCGG	3 cut(s)	677, 1236, 1277
MspR9I	CCNGG	4 cut(s)	936, 1136, 1206, 1291
MunI	CAATTG	1 cut(s)	837
MvaI	CCWGG	4 cut(s)	936, 1136, 1206, 1291
MwoI	GCNNNNNNNGC	6 cut(s)	218, 397, 542, 842, 921, 1324
NdeII	GATC	3 cut(s)	929, 1138, 1164
NlaIII	CATG	5 cut(s)	800, 910, 924, 962, 1387
NlaIV	GGNNCC	5 cut(s)	879, 1140, 1155, 1234, 1288
NmuCI	GTSAC	2 cut(s)	475, 1264
NsiI	ATGCAT	1 cut(s)	368
NspI	RCATGY	3 cut(s)	800, 924, 1387
NspV	TTCGAA	1 cut(s)	50
PaeI	GCATGC	1 cut(s)	924
PciI	ACATGT	1 cut(s)	1383
PdmI	GAANNNNTTC	2 cut(s)	89, 954
PfeI	GAWTC	2 cut(s)	36, 1213
PfoI	TCCNGGA	2 cut(s)	934, 1134
PkrI	GCNGC	5 cut(s)	538, 574, 894, 1275, 1317
PleI	GAGTC	3 cut(s)	19, 472, 1261
PpsI	GAGTC	3 cut(s)	19, 472, 1261
PscI	ACATGT	1 cut(s)	1383
PshBI	ATTAAT	1 cut(s)	1128
Psp124BI	GAGCTC	1 cut(s)	223
Psp6I	CCWGG	4 cut(s)	934, 1134, 1204, 1289
PspGI	CCWGG	4 cut(s)	934, 1134, 1204, 1289
PspN4I	GGNNCC	5 cut(s)	879, 1140, 1155, 1234, 1288
PspPI	GGNCC	2 cut(s)	182, 1233
PsrI	GAACNNNNNNTAC	2 cut(s)	576, 608
PstNI	CAGNNNCTG	3 cut(s)	518, 536, 578
PsuI	RGATCY	2 cut(s)	929, 1138
RsaI	GTAC	3 cut(s)	264, 699, 1245
RsaNI	GTAC	3 cut(s)	263, 698, 1244
RseI	CAYNNNNRTG	2 cut(s)	371, 1034
SacI	GAGCTC	1 cut(s)	223
SaqAI	TTAA	5 cut(s)	731, 786, 1053, 1128, 1389
SatI	GCNGC	5 cut(s)	537, 573, 893, 1274, 1316
Sau3AI	GATC	3 cut(s)	929, 1138, 1164
Sau96I	GGNCC	2 cut(s)	182, 1233
SchI	GAGTC	3 cut(s)	20, 472, 1261
ScrFI	CCNGG	4 cut(s)	936, 1136, 1206, 1291
SduI	GDGCHC	3 cut(s)	223, 1156, 1289
SexAI	ACCWGGT	1 cut(s)	1204
SfaNI	GCATC	2 cut(s)	179, 832
SfcI	CTRYAG	2 cut(s)	234, 1177
SfuI	TTCGAA	1 cut(s)	50
SinI	GGWCC	1 cut(s)	182
SmiMI	CAYNNNNRTG	2 cut(s)	371, 1034
SmlI	CTYRAG	2 cut(s)	8, 1109
SmoI	CTYRAG	2 cut(s)	8, 1109
SphI	GCATGC	1 cut(s)	924
Sse9I	AATT	8 cut(s)	18, 88, 145, 837, 858, 1129, 1169, 1347
SsiI	CCGC	4 cut(s)	29, 1253, 1271, 1315
SspMI	CTAG	5 cut(s)	159, 258, 306, 660, 1043
SstI	GAGCTC	1 cut(s)	223
StyD4I	CCNGG	4 cut(s)	934, 1134, 1204, 1289
StyI	CCWWGG	2 cut(s)	99, 407
TaaI	ACNGT	1 cut(s)	1178
TaqI	TCGA	4 cut(s)	50, 133, 143, 283
TasI	AATT	8 cut(s)	18, 88, 145, 837, 858, 1129, 1169, 1347
TatI	WGTACW	2 cut(s)	262, 1243
TauI	GCSGC	1 cut(s)	1318
TfiI	GAWTC	2 cut(s)	36, 1213
Tru1I	TTAA	5 cut(s)	731, 786, 1053, 1128, 1389
Tru9I	TTAA	5 cut(s)	731, 786, 1053, 1128, 1389
TscAI	CASTG	2 cut(s)	616, 853
TseFI	GTSAC	2 cut(s)	475, 1264
TseI	GCWGC	4 cut(s)	536, 572, 892, 1273
Tsp45I	GTSAC	2 cut(s)	475, 1264
TspDTI	ATGAA	4 cut(s)	28, 681, 947, 1206
TspRI	CASTG	2 cut(s)	616, 853
VpaK11BI	GGWCC	1 cut(s)	182
VspI	ATTAAT	1 cut(s)	1128
XapI	RAATTY	2 cut(s)	88, 1169
XceI	RCATGY	3 cut(s)	800, 924, 1387
XcmI	CCANNNNNNNNNTGG	1 cut(s)	103
XmnI	GAANNNNTTC	2 cut(s)	89, 954
XspI	CTAG	5 cut(s)	159, 258, 306, 660, 1043
Zsp2I	ATGCAT	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.