Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002079.1

Orthogroup ID

OG0007612

Physical Location & Seq

Genomic Coordinates Reverse (-)

67160 .. 69028

Gene Structure 1869 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002079.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

atggtgaagtgtggagttgttttagcagctatggtttgtggggttttggtgtatgggtctaggagagcttttgctgtggagggtgtggtcaatgcaagctatggggttgttgacaaatgcatattgatgttcagaaatgcttggcagaagacgctatggccttggaaggtgcgtgagttggctgagaaagagcctgaaaatggtgtcttcagattgcttcgcaatgatgtgactcggttcttgtcaaccgtatttattggcacaacagcaactgctttagttacagaggctgcaacagcgatatttggtgaagctggtgtttgtgcagcaactggagtaatggctgttcttattttgctcctcactgaaataactcccaaaagtgtttctgttcacaatcccacagaagttgctaggtttgtggttaggccggtggcttggctttcattggtactatatcctgtcggaagagttggctttcatctatcaatggggatgctgaaaattctagggttgaaaggaagaagtgaaccatatgttactgaagaggagttaaaactgatgttgcgagcggcagagttaagtggggcaatagaggaggaagaacaggtactccaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS CorC_HlyC DUF21

Protein Analysis

206

Amino Acids

22.51

Weight (kDa)

7.66

Isoelectric Point (pI)

39.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007612)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55930 AT1G55930 AT3G13070
malus_domestica	MD03G1188400.v1.1 MD11G1204000.v1.1
prunus_persica	Prupe.4G235000_v2.0.a1 Prupe.4G235000_v2.0.a1 Prupe.4G235000_v2.0.a1 Prupe.4G235000_v2.0.a1
pyrus_communis	pycom03g14090 pycom11g17690 pycom11g17700
rosa_chinensis	RchiOBHm_Chr1g0355491 RchiOBHm_Chr2g0115171 RchiOBHm_Chr5g0043101
rosa_laevigata	RLG00000031847
rosa_multiflora	Rmu_sc0001714.1_g000010 Rmu_sc0002079.1_g000010 Rmu_sc0008148.1_g000026
rosa_roxburghii	Rroxscaffold_1G00037630 Rroxscaffold_1G00037750
rosa_samantha	Rh2CG257200 Rh5BG295700
rosa_wichuraiana	Rw2G047580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	572
AciI	CCGC	1 cut(s)	572
AcsI	RAATTY	1 cut(s)	504
AcuI	CTGAAG	2 cut(s)	193, 564
AfaI	GTAC	2 cut(s)	453, 612
AfiI	CCNNNNNNNGG	1 cut(s)	200
AgsI	TTSAA	1 cut(s)	517
AloI	GAACNNNNNNTCC	1 cut(s)	597
AluBI	AGCT	4 cut(s)	29, 68, 99, 314
AluI	AGCT	4 cut(s)	29, 68, 99, 314
AlwNI	CAGNNNCTG	3 cut(s)	272, 290, 332
AoxI	GGCC	2 cut(s)	158, 428
ApeKI	GCWGC	3 cut(s)	26, 290, 326
ApoI	RAATTY	1 cut(s)	504
AsuHPI	GGTGA	2 cut(s)	16, 320
BarI	GAAGNNNNNNTAC	1 cut(s)	594
BbsI	GAAGAC	2 cut(s)	155, 199
BbvI	GCAGC	3 cut(s)	38, 277, 338
BfaI	CTAG	3 cut(s)	60, 414, 509
BisI	GCNGC	4 cut(s)	27, 291, 327, 573
BlsI	GCNGC	4 cut(s)	28, 292, 328, 574
BmsI	GCATC	1 cut(s)	486
BpiI	GAAGAC	2 cut(s)	155, 199
BpmI	CTGGAG	1 cut(s)	354
BsaJI	CCNNGG	1 cut(s)	161
BsaXI	ACNNNNNCTCC	1 cut(s)	597
Bsc4I	CCNNNNNNNGG	1 cut(s)	200
Bse118I	RCCGGY	1 cut(s)	430
Bse1I	ACTGG	1 cut(s)	337
Bse3DI	GCAATG	1 cut(s)	229
BseDI	CCNNGG	1 cut(s)	161
BseGI	GGATG	1 cut(s)	501
BseLI	CCNNNNNNNGG	1 cut(s)	200
BseMI	GCAATG	1 cut(s)	229
BseMII	CTCAG	1 cut(s)	174
BseNI	ACTGG	1 cut(s)	337
BseRI	GAGGAG	3 cut(s)	350, 563, 611
BseXI	GCAGC	3 cut(s)	38, 277, 338
BsgI	GTGCAG	1 cut(s)	345
BshFI	GGCC	2 cut(s)	160, 430
BsiSI	CCGG	1 cut(s)	431
BslI	CCNNNNNNNGG	1 cut(s)	200
BsnI	GGCC	2 cut(s)	160, 430
BspACI	CCGC	1 cut(s)	572
BspANI	GGCC	2 cut(s)	160, 430
BspCNI	CTCAG	1 cut(s)	175
BsrBI	CCGCTC	1 cut(s)	572
BsrDI	GCAATG	1 cut(s)	229
BsrFI	RCCGGY	1 cut(s)	430
BsrI	ACTGG	1 cut(s)	337
BssAI	RCCGGY	1 cut(s)	430
BssECI	CCNNGG	1 cut(s)	161
BssT1I	CCWWGG	1 cut(s)	161
Bst4CI	ACNGT	1 cut(s)	250
Bst6I	CTCTTC	2 cut(s)	463, 540
BstC8I	GCNNGC	2 cut(s)	97, 570
BstDEI	CTNAG	1 cut(s)	183
BstF5I	GGATG	1 cut(s)	501
BstMWI	GCNNNNNNNGC	2 cut(s)	151, 296
BstV1I	GCAGC	3 cut(s)	38, 277, 338
BstV2I	GAAGAC	2 cut(s)	155, 199
BsuRI	GGCC	2 cut(s)	160, 430
BtsCI	GGATG	1 cut(s)	501
BtsIMutI	CAGTG	1 cut(s)	363
Cac8I	GCNNGC	2 cut(s)	97, 570
CaiI	CAGNNNCTG	3 cut(s)	272, 290, 332
Cfr10I	RCCGGY	1 cut(s)	430
CseI	GACGC	1 cut(s)	160
Csp6I	GTAC	2 cut(s)	452, 611
CspCI	CAANNNNNGTGG	2 cut(s)	391, 426
CviQI	GTAC	2 cut(s)	452, 611
DdeI	CTNAG	1 cut(s)	183
Eam1104I	CTCTTC	2 cut(s)	463, 540
EarI	CTCTTC	2 cut(s)	463, 540
Eco130I	CCWWGG	1 cut(s)	161
Eco57I	CTGAAG	2 cut(s)	193, 564
EcoT14I	CCWWGG	1 cut(s)	161
EcoT22I	ATGCAT	1 cut(s)	122
ErhI	CCWWGG	1 cut(s)	161
FaiI	YATR	8 cut(s)	32, 54, 102, 122, 157, 457, 535, 537
FauNDI	CATATG	1 cut(s)	535
Fnu4HI	GCNGC	4 cut(s)	27, 291, 327, 573
FokI	GGATG	1 cut(s)	508
Fsp4HI	GCNGC	4 cut(s)	27, 291, 327, 573
FspBI	CTAG	3 cut(s)	60, 414, 509
GluI	GCNGC	4 cut(s)	27, 291, 327, 573
GsuI	CTGGAG	1 cut(s)	354
HaeIII	GGCC	2 cut(s)	160, 430
HapII	CCGG	1 cut(s)	431
HgaI	GACGC	1 cut(s)	160
HincII	GTYRAC	2 cut(s)	112, 246
HindII	GTYRAC	2 cut(s)	112, 246
HinfI	GANTC	1 cut(s)	232
HpaII	CCGG	1 cut(s)	431
HphI	GGTGA	2 cut(s)	16, 320
Hpy166II	GTNNAC	4 cut(s)	112, 246, 394, 530
Hpy188I	TCNGA	3 cut(s)	134, 212, 467
Hpy8I	GTNNAC	4 cut(s)	112, 246, 394, 530
HpyAV	CCTTC	1 cut(s)	160
HpyCH4III	ACNGT	1 cut(s)	250
HpyCH4V	TGCA	4 cut(s)	95, 120, 293, 326
HpyF10VI	GCNNNNNNNGC	2 cut(s)	151, 296
HpyF3I	CTNAG	1 cut(s)	183
LmnI	GCTCC	1 cut(s)	363
LpnPI	CCDG	6 cut(s)	207, 300, 318, 444, 474, 593
Lsp1109I	GCAGC	3 cut(s)	38, 277, 338
LweI	GCATC	1 cut(s)	486
MaeI	CTAG	3 cut(s)	60, 414, 509
MaeIII	GTNAC	3 cut(s)	229, 280, 538
MbiI	CCGCTC	1 cut(s)	572
MboII	GAAGA	6 cut(s)	160, 199, 480, 534, 557, 614
MluCI	AATT	1 cut(s)	504
MlyI	GAGTC	1 cut(s)	226
MmeI	TCCRAC	1 cut(s)	445
MnlI	CCTC	6 cut(s)	73, 280, 371, 541, 589, 592
Mph1103I	ATGCAT	1 cut(s)	122
MseI	TTAA	2 cut(s)	554, 581
MslI	CAYNNNNRTG	1 cut(s)	125
MspI	CCGG	1 cut(s)	431
MwoI	GCNNNNNNNGC	2 cut(s)	151, 296
NdeI	CATATG	1 cut(s)	535
NmuCI	GTSAC	1 cut(s)	229
NsiI	ATGCAT	1 cut(s)	122
PkrI	GCNGC	4 cut(s)	28, 292, 328, 574
PleI	GAGTC	1 cut(s)	226
PpsI	GAGTC	1 cut(s)	226
PsrI	GAACNNNNNNTAC	2 cut(s)	330, 362
PstNI	CAGNNNCTG	3 cut(s)	272, 290, 332
RsaI	GTAC	2 cut(s)	453, 612
RsaNI	GTAC	2 cut(s)	452, 611
RseI	CAYNNNNRTG	1 cut(s)	125
SaqAI	TTAA	2 cut(s)	554, 581
SatI	GCNGC	4 cut(s)	27, 291, 327, 573
SchI	GAGTC	1 cut(s)	226
SetI	ASST	7 cut(s)	31, 70, 101, 171, 316, 419, 612
SfaNI	GCATC	1 cut(s)	486
SmiMI	CAYNNNNRTG	1 cut(s)	125
Sse9I	AATT	1 cut(s)	504
SsiI	CCGC	1 cut(s)	572
SspMI	CTAG	3 cut(s)	60, 414, 509
StyI	CCWWGG	1 cut(s)	161
TaaI	ACNGT	1 cut(s)	250
TasI	AATT	1 cut(s)	504
TauI	GCSGC	1 cut(s)	575
Tru1I	TTAA	2 cut(s)	554, 581
Tru9I	TTAA	2 cut(s)	554, 581
TscAI	CASTG	1 cut(s)	370
TseFI	GTSAC	1 cut(s)	229
TseI	GCWGC	3 cut(s)	26, 290, 326
Tsp45I	GTSAC	1 cut(s)	229
TspDTI	ATGAA	2 cut(s)	435, 470
TspRI	CASTG	1 cut(s)	370
XapI	RAATTY	1 cut(s)	504
XspI	CTAG	3 cut(s)	60, 414, 509
Zsp2I	ATGCAT	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.