Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0007612

Physical Location & Seq

Genomic Coordinates Forward (+)

74887926 .. 74897002

Gene Structure 9077 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G047580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1326 bp

ATGGTGAAGTGTGGAGTCGTTTTAGCAGCTATGGTTTGTGGGCTTTTGGTGTGTGGGTCTAGGAGAGCTTTTGCTGTGGAGGGTGTGGTCAATGCAAGCTATGGGGTTGTTGACAAATGCATATTGATGTTCAGAAATGCTTGGACGCTATGGCCTTGGAAGGTGCGTGAGTTGGCTGAGAAAGAGCCTGAAAATGGTGTCTTCAGATTGCTTCGCAATGATGTGACTCAGTTCTTGTCAACCATACTTATTGGCACAACTGTTGTCAATATTAGAGCAACTGCTTTAGTTACAGAGGCTGCAACAGCGATATTTGGTGAAGCTGGTGTTTGTGCAGCAACTGGAGTAATGACTGTTCTTATTTTGCTCCTCACTGAAATAACTCCCAAAAGTGTTTCTGTTCACAATCCCACAGAAGTTGCTAGGTTTGTGGTTAGGCCGGTGGCTTGGCTTTCATTGGTACTATATCCTGTCGGAAGAGTTGGTACATACCTATTAATGGGGATGCTGAAAATTATAGGGTTGAAAGGAAGAAGTGAACCATATGTTACTGAAGAGGAGTTAAAACTGATGTTGCGAGCGGCAGAGTTAAGTGGGGCAATAGAGGAGGAAGAACAGGATATGATTGAAAATGTGTTGGAGATTAAAAATACGCATGTTAGAGAGGTGATGACACCTCTTGTAGATGTAGTTGCAATTGATGCCAGTGCAACGCTAATTGATTTTCACGACTTGGTGCCTGTTTTTGAGCAGCGTGTTGATAACATAGTAGGCATTGCATATGCAATGGATCTCCTGGATTATGTTCAGAAGCTTATGAACCACAAGCAAAAATTTATGAGAACCGATCGATTCGAAGTCAGAACCTCAAATTTAGCAAAAGTCTTAGGCATATCTTATTTGAATAGTTGTACATTAGTATATTGGCAGCCGGAAATATGTATGCAAGTTGAAATTGTGACGAAGAATCTTTTTAAACAAAAAGAAACCAAGTCAATTAGATGCATTATACCAAATAATAATATGCCATCAAAAAAATCTCTGTACATAATATACTCTCTAGTGAAGCAATTAATCAATTCAAAAGTATCTAAAAAAAACATAAAAGTCCATGAATCATGTCCATCAATAGCTTGCAACCCAAATCACCGATTCACTTTGGCATCTGAGAAAGAGAATCAAGAATCTTCCTCGTATACCTATTCTCTAATTTGGCATTTGACGATCCCTACCTTCTTACCAAAGGATTTAAGTACACCACAATATATATTTAAGGATCCTTCCCAATTAAGAAAAAAAATGATTACACCACATTTGACTAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS CorC_HlyC DUF21

Protein Analysis

441

Amino Acids

49.62

Weight (kDa)

8.67

Isoelectric Point (pI)

39.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CNNM	PF01595	50 - 205	9.1e-38	Cyclin M transmembrane N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007612)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55930 AT1G55930 AT3G13070
malus_domestica	MD03G1188400.v1.1 MD11G1204000.v1.1
prunus_persica	Prupe.4G235000_v2.0.a1 Prupe.4G235000_v2.0.a1 Prupe.4G235000_v2.0.a1 Prupe.4G235000_v2.0.a1
pyrus_communis	pycom03g14090 pycom11g17690 pycom11g17700
rosa_chinensis	RchiOBHm_Chr1g0355491 RchiOBHm_Chr2g0115171 RchiOBHm_Chr5g0043101
rosa_laevigata	RLG00000031847
rosa_multiflora	Rmu_sc0001714.1_g000010 Rmu_sc0002079.1_g000010 Rmu_sc0008148.1_g000026
rosa_roxburghii	Rroxscaffold_1G00037630 Rroxscaffold_1G00037750
rosa_samantha	Rh2CG257200 Rh5BG295700
rosa_wichuraiana	Rw2G047580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	736
AccBSI	CCGCTC	1 cut(s)	581
AccI	GTMKAC	1 cut(s)	1196
AciI	CCGC	1 cut(s)	581
AclWI	GGATC	4 cut(s)	798, 1219, 1271, 1284
AcsI	RAATTY	2 cut(s)	833, 871
AcuI	CTGAAG	2 cut(s)	187, 573
AfaI	GTAC	5 cut(s)	462, 487, 913, 1046, 1255
AfiI	CCNNNNNNNGG	2 cut(s)	194, 499
AgsI	TTSAA	5 cut(s)	526, 629, 904, 953, 1083
AjnI	CCWGG	1 cut(s)	795
AluBI	AGCT	6 cut(s)	29, 68, 99, 323, 814, 1133
AluI	AGCT	6 cut(s)	29, 68, 99, 323, 814, 1133
AlwI	GGATC	4 cut(s)	798, 1219, 1271, 1284
AlwNI	CAGNNNCTG	2 cut(s)	299, 341
AoxI	GGCC	2 cut(s)	152, 437
ApeKI	GCWGC	5 cut(s)	26, 299, 335, 751, 928
ApoI	RAATTY	2 cut(s)	833, 871
AseI	ATTAAT	2 cut(s)	497, 1073
AsuHPI	GGTGA	4 cut(s)	16, 329, 679, 1139
AsuII	TTCGAA	1 cut(s)	855
BamHI	GGATCC	1 cut(s)	1276
BanI	GGYRCC	1 cut(s)	736
BarI	GAAGNNNNNNTAC	2 cut(s)	469, 501
BbsI	GAAGAC	1 cut(s)	193
BbvI	GCAGC	5 cut(s)	38, 286, 347, 763, 940
BccI	CCATC	2 cut(s)	1036, 1132
BciT130I	CCWGG	1 cut(s)	797
BfaI	CTAG	4 cut(s)	60, 423, 1061, 1324
BisI	GCNGC	6 cut(s)	27, 300, 336, 582, 752, 929
BlsI	GCNGC	6 cut(s)	28, 301, 337, 583, 753, 930
Bme1390I	CCNGG	1 cut(s)	797
BmiI	GGNNCC	2 cut(s)	738, 1278
BmrFI	CCNGG	1 cut(s)	797
BmsI	GCATC	4 cut(s)	495, 691, 992, 1172
BpiI	GAAGAC	1 cut(s)	193
BpmI	CTGGAG	1 cut(s)	363
Bpu14I	TTCGAA	1 cut(s)	855
Bsa29I	ATCGAT	1 cut(s)	850
BsaJI	CCNNGG	1 cut(s)	155
Bsc4I	CCNNNNNNNGG	2 cut(s)	194, 499
Bse118I	RCCGGY	1 cut(s)	439
Bse1I	ACTGG	2 cut(s)	346, 705
Bse3DI	GCAATG	3 cut(s)	223, 774, 792
BseBI	CCWGG	1 cut(s)	797
BseCI	ATCGAT	1 cut(s)	850
BseDI	CCNNGG	1 cut(s)	155
BseGI	GGATG	1 cut(s)	510
BseLI	CCNNNNNNNGG	2 cut(s)	194, 499
BseMI	GCAATG	3 cut(s)	223, 774, 792
BseMII	CTCAG	3 cut(s)	168, 242, 1158
BseNI	ACTGG	2 cut(s)	346, 705
BseRI	GAGGAG	3 cut(s)	359, 572, 620
BseXI	GCAGC	5 cut(s)	38, 286, 347, 763, 940
BsgI	GTGCAG	1 cut(s)	354
Bsh1285I	CGRYCG	1 cut(s)	850
BshFI	GGCC	2 cut(s)	154, 439
BshNI	GGYRCC	1 cut(s)	736
BshVI	ATCGAT	1 cut(s)	850
BsiEI	CGRYCG	1 cut(s)	850
BsiSI	CCGG	2 cut(s)	440, 932
BslI	CCNNNNNNNGG	2 cut(s)	194, 499
BsnI	GGCC	2 cut(s)	154, 439
Bsp119I	TTCGAA	1 cut(s)	855
Bsp1407I	TGTACA	2 cut(s)	911, 1044
Bsp143I	GATC	4 cut(s)	790, 847, 1224, 1276
BspACI	CCGC	1 cut(s)	581
BspANI	GGCC	2 cut(s)	154, 439
BspCNI	CTCAG	3 cut(s)	169, 241, 1159
BspDI	ATCGAT	1 cut(s)	850
BspLI	GGNNCC	2 cut(s)	738, 1278
BspPI	GGATC	4 cut(s)	798, 1219, 1271, 1284
BspT104I	TTCGAA	1 cut(s)	855
BspT107I	GGYRCC	1 cut(s)	736
BsrBI	CCGCTC	1 cut(s)	581
BsrDI	GCAATG	3 cut(s)	223, 774, 792
BsrFI	RCCGGY	1 cut(s)	439
BsrGI	TGTACA	2 cut(s)	911, 1044
BsrI	ACTGG	2 cut(s)	346, 705
BssAI	RCCGGY	1 cut(s)	439
BssECI	CCNNGG	1 cut(s)	155
BssMI	GATC	4 cut(s)	790, 847, 1224, 1276
BssNAI	GTATAC	1 cut(s)	1197
BssT1I	CCWWGG	1 cut(s)	155
Bst1107I	GTATAC	1 cut(s)	1197
Bst2UI	CCWGG	1 cut(s)	797
Bst4CI	ACNGT	2 cut(s)	262, 355
Bst6I	CTCTTC	2 cut(s)	472, 549
BstAPI	GCANNNNNTGC	1 cut(s)	701
BstAUI	TGTACA	2 cut(s)	911, 1044
BstBI	TTCGAA	1 cut(s)	855
BstC8I	GCNNGC	3 cut(s)	97, 579, 1135
BstDEI	CTNAG	4 cut(s)	177, 228, 886, 1167
BstF5I	GGATG	1 cut(s)	510
BstKTI	GATC	4 cut(s)	793, 850, 1227, 1279
BstMBI	GATC	4 cut(s)	790, 847, 1224, 1276
BstMCI	CGRYCG	1 cut(s)	850
BstMWI	GCNNNNNNNGC	2 cut(s)	305, 701
BstNI	CCWGG	1 cut(s)	797
BstNSI	RCATGY	1 cut(s)	659
BstSCI	CCNGG	1 cut(s)	795
BstV1I	GCAGC	5 cut(s)	38, 286, 347, 763, 940
BstV2I	GAAGAC	1 cut(s)	193
BstX2I	RGATCY	2 cut(s)	790, 1276
BstYI	RGATCY	2 cut(s)	790, 1276
BstZ17I	GTATAC	1 cut(s)	1197
Bsu15I	ATCGAT	1 cut(s)	850
BsuRI	GGCC	2 cut(s)	154, 439
BsuTUI	ATCGAT	1 cut(s)	850
BtsCI	GGATG	1 cut(s)	510
BtsIMutI	CAGTG	2 cut(s)	372, 712
Cac8I	GCNNGC	3 cut(s)	97, 579, 1135
CaiI	CAGNNNCTG	2 cut(s)	299, 341
Cfr10I	RCCGGY	1 cut(s)	439
ClaI	ATCGAT	1 cut(s)	850
CseI	GACGC	1 cut(s)	154
Csp6I	GTAC	5 cut(s)	461, 486, 912, 1045, 1254
CspCI	CAANNNNNGTGG	2 cut(s)	400, 435
CviAII	CATG	3 cut(s)	656, 1112, 1119
CviQI	GTAC	5 cut(s)	461, 486, 912, 1045, 1254
DdeI	CTNAG	4 cut(s)	177, 228, 886, 1167
DpnI	GATC	4 cut(s)	792, 849, 1226, 1278
DpnII	GATC	4 cut(s)	790, 847, 1224, 1276
DraI	TTTAAA	1 cut(s)	976
Eam1104I	CTCTTC	2 cut(s)	472, 549
EarI	CTCTTC	2 cut(s)	472, 549
Eco130I	CCWWGG	1 cut(s)	155
Eco57I	CTGAAG	2 cut(s)	187, 573
EcoRII	CCWGG	1 cut(s)	795
EcoT14I	CCWWGG	1 cut(s)	155
EcoT22I	ATGCAT	2 cut(s)	122, 1007
ErhI	CCWWGG	1 cut(s)	155
FaeI	CATG	3 cut(s)	659, 1115, 1122
FatI	CATG	3 cut(s)	655, 1111, 1118
FauNDI	CATATG	2 cut(s)	544, 781
FblI	GTMKAC	1 cut(s)	1196
Fnu4HI	GCNGC	6 cut(s)	27, 300, 336, 582, 752, 929
FokI	GGATG	1 cut(s)	517
Fsp4HI	GCNGC	6 cut(s)	27, 300, 336, 582, 752, 929
FspBI	CTAG	4 cut(s)	60, 423, 1061, 1324
GluI	GCNGC	6 cut(s)	27, 300, 336, 582, 752, 929
GsuI	CTGGAG	1 cut(s)	363
HaeIII	GGCC	2 cut(s)	154, 439
HapII	CCGG	2 cut(s)	440, 932
HgaI	GACGC	1 cut(s)	154
Hin1II	CATG	3 cut(s)	659, 1115, 1122
HincII	GTYRAC	2 cut(s)	112, 240
HindII	GTYRAC	2 cut(s)	112, 240
HindIII	AAGCTT	1 cut(s)	812
HinfI	GANTC	8 cut(s)	15, 226, 852, 967, 1115, 1152, 1177, 1184
HpaII	CCGG	2 cut(s)	440, 932
HphI	GGTGA	4 cut(s)	16, 329, 679, 1139
Hpy166II	GTNNAC	6 cut(s)	112, 240, 403, 539, 1197, 1256
Hpy188I	TCNGA	6 cut(s)	134, 206, 476, 810, 863, 1168
Hpy188III	TCNNGA	2 cut(s)	728, 1181
Hpy8I	GTNNAC	6 cut(s)	112, 240, 403, 539, 1197, 1256
HpyAV	CCTTC	3 cut(s)	154, 1243, 1290
HpyCH4III	ACNGT	2 cut(s)	262, 355
HpyF10VI	GCNNNNNNNGC	2 cut(s)	305, 701
HpyF3I	CTNAG	4 cut(s)	177, 228, 886, 1167
Hsp92II	CATG	3 cut(s)	659, 1115, 1122
Kzo9I	GATC	4 cut(s)	790, 847, 1224, 1276
LmnI	GCTCC	1 cut(s)	372
Lsp1109I	GCAGC	5 cut(s)	38, 286, 347, 763, 940
LweI	GCATC	4 cut(s)	495, 691, 992, 1172
MaeI	CTAG	4 cut(s)	60, 423, 1061, 1324
MaeIII	GTNAC	4 cut(s)	223, 289, 547, 958
MalI	GATC	4 cut(s)	792, 849, 1226, 1278
MbiI	CCGCTC	1 cut(s)	581
MboI	GATC	4 cut(s)	790, 847, 1224, 1276
MboII	GAAGA	7 cut(s)	193, 489, 543, 566, 623, 976, 1179
MfeI	CAATTG	1 cut(s)	696
MflI	RGATCY	2 cut(s)	790, 1276
MlyI	GAGTC	2 cut(s)	24, 220
MmeI	TCCRAC	2 cut(s)	454, 618
Mph1103I	ATGCAT	2 cut(s)	122, 1007
MseI	TTAA	9 cut(s)	497, 563, 590, 645, 975, 1073, 1250, 1272, 1289
MslI	CAYNNNNRTG	1 cut(s)	125
MspI	CCGG	2 cut(s)	440, 932
MspR9I	CCNGG	1 cut(s)	797
MunI	CAATTG	1 cut(s)	696
MvaI	CCWGG	1 cut(s)	797
MwoI	GCNNNNNNNGC	2 cut(s)	305, 701
NdeI	CATATG	2 cut(s)	544, 781
NdeII	GATC	4 cut(s)	790, 847, 1224, 1276
NlaIII	CATG	3 cut(s)	659, 1115, 1122
NlaIV	GGNNCC	2 cut(s)	738, 1278
NmuCI	GTSAC	2 cut(s)	223, 958
NsiI	ATGCAT	2 cut(s)	122, 1007
NspI	RCATGY	1 cut(s)	659
NspV	TTCGAA	1 cut(s)	855
PfeI	GAWTC	6 cut(s)	852, 967, 1115, 1152, 1177, 1184
PfoI	TCCNGGA	1 cut(s)	795
PkrI	GCNGC	6 cut(s)	28, 301, 337, 583, 753, 930
Ple19I	CGATCG	1 cut(s)	850
PleI	GAGTC	2 cut(s)	23, 220
PpsI	GAGTC	2 cut(s)	23, 220
PshBI	ATTAAT	2 cut(s)	497, 1073
Psp6I	CCWGG	1 cut(s)	795
PspGI	CCWGG	1 cut(s)	795
PspN4I	GGNNCC	2 cut(s)	738, 1278
PsrI	GAACNNNNNNTAC	2 cut(s)	339, 371
PstNI	CAGNNNCTG	2 cut(s)	299, 341
PsuI	RGATCY	2 cut(s)	790, 1276
PvuI	CGATCG	1 cut(s)	850
RsaI	GTAC	5 cut(s)	462, 487, 913, 1046, 1255
RsaNI	GTAC	5 cut(s)	461, 486, 912, 1045, 1254
RseI	CAYNNNNRTG	1 cut(s)	125
SaqAI	TTAA	9 cut(s)	497, 563, 590, 645, 975, 1073, 1250, 1272, 1289
SatI	GCNGC	6 cut(s)	27, 300, 336, 582, 752, 929
Sau3AI	GATC	4 cut(s)	790, 847, 1224, 1276
SchI	GAGTC	2 cut(s)	24, 220
ScrFI	CCNGG	1 cut(s)	797
SfaNI	GCATC	4 cut(s)	495, 691, 992, 1172
SfuI	TTCGAA	1 cut(s)	855
SmiMI	CAYNNNNRTG	1 cut(s)	125
SsiI	CCGC	1 cut(s)	581
SspI	AATATT	1 cut(s)	271
SspMI	CTAG	4 cut(s)	60, 423, 1061, 1324
StyD4I	CCNGG	1 cut(s)	795
StyI	CCWWGG	1 cut(s)	155
TaaI	ACNGT	2 cut(s)	262, 355
TaqI	TCGA	2 cut(s)	850, 855
TatI	WGTACW	3 cut(s)	911, 1044, 1253
TauI	GCSGC	1 cut(s)	584
TfiI	GAWTC	6 cut(s)	852, 967, 1115, 1152, 1177, 1184
Tru1I	TTAA	9 cut(s)	497, 563, 590, 645, 975, 1073, 1250, 1272, 1289
Tru9I	TTAA	9 cut(s)	497, 563, 590, 645, 975, 1073, 1250, 1272, 1289
TscAI	CASTG	2 cut(s)	379, 712
TseFI	GTSAC	2 cut(s)	223, 958
TseI	GCWGC	5 cut(s)	26, 299, 335, 751, 928
Tsp45I	GTSAC	2 cut(s)	223, 958
TspDTI	ATGAA	3 cut(s)	444, 833, 1128
TspRI	CASTG	2 cut(s)	379, 712
VspI	ATTAAT	2 cut(s)	497, 1073
XapI	RAATTY	2 cut(s)	833, 871
XceI	RCATGY	1 cut(s)	659
XmiI	GTMKAC	1 cut(s)	1196
XspI	CTAG	4 cut(s)	60, 423, 1061, 1324
Zsp2I	ATGCAT	2 cut(s)	122, 1007

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.