AT3G13226

RecX family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0009626
Physical Location & Seq
Reverse (-)
4264194 .. 4266388
2195 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G13226.1

Sequence Viewer

Length: 1149 bp
ATGCTGAAACTAGGGTTTCGGTTAGCGATTGGCATTCAACATCATCGCCTCTTCCGTATTCCATGGGCGAAGAGACACTCTGTACCTAGAATCTTGTGTTCTGAGCAGCGGGATTACTGTTCATCAGGTCTGACAAAGTATGTTCCTAAGAAGTCTCGGAAGATTACTGAAGATTTGACATCTCAGCAATTTGATGTTACTAGAGTGGATCATAGTGTGTTGGGATTTCAAGTTAAGGGTAACAGCAAAGAGGCTAGAGATGGCTCATTTTTGGATCTGCAAGAGGAAAATGATACTGGAAGTTACACGAATGTGTCTTGTGATGACTCTGATGAAGGTTTTATGAGTTTGGACAAGGGTATAGATGCTAGTAGATTGGATCATAGTGTATTGGGGTCTAAAGTGAAGGCTAACATCAAAGAGACTGGAGAGGATACTGATTTTCATCTGCGGGATAAAAATGATGCTGATATGTACTCTGATGTTTCTTGTGATGACTCTAATGATGAAAGCAGCAACGAAGTTAGATCTACAGGCTATAAGTCGACGAGACAACACAAACAAGCTTATGATAAAATCAAACTACATTTGGAAGCTGAACAGGCCAAGAGTAGCAAAGAAGCCTGCAAAACCACGCAAGATGCAGAGCACATGGCTATTCGCTATCTCGGTTTAAGAGCATATTCAGCAGCTGACCTGAAGAAGAAGCTCATAGGAAAGAAATATCCTATTGAAGTCGTTGACAAAGTGATCGATGATTTCCAGATTCGAGGTTTTGTCAATGATAGCTTGTACGCGGAGTCATTCACTCGATCTAGATGGTCTTCCTTAAGTTGGGGACCAAGGCGGATCAAACAAGCATTGTTTAAGAAAGGCATAAGCAACAAAGACTCAGAGACGGCCATAAAGCTGGTTTTTGAGAAACGCCAATGCAATGAAGGAGATGAAGAAGCAGAACTAAACCACGGGCTGTCCAAGGAAGCAGTGGACCAGCTTTATGTCCAGGCATCAAAGCGGTGGCTTCAAGGTCGAGACTTGCCTACAGAAACTCGTAAAACTAGAGTCATCCGGTGGCTTCAGTACCGGGGTTTCAACTGGGGTGTCGTTACCCAGCTTCTAAAGAGGTTAGAGTCTACTCATGAGTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RecX

Protein Analysis

382

Amino Acids

43.78

Weight (kDa)

8.67

Isoelectric Point (pI)

41.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RecX_HTH1 PF21982 218 - 252 3e-07 RecX, first three-helix domain
RecX_HTH2 PF02631 261 - 301 4e-11 RecX, second three-helix domain
RecX_HTH3 PF21981 329 - 372 2.3e-07 RecX, third three-helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 545, 1133
AccII CGCG 1 cut(s) 797
AciI CCGC 5 cut(s) 109, 451, 797, 847, 1015
AclWI GGATC 4 cut(s) 216, 282, 387, 857
AcoI YGGCCR 1 cut(s) 900
AcuI CTGAAG 3 cut(s) 189, 719, 1061
AfaI GTAC 4 cut(s) 84, 476, 794, 1082
AfiI CCNNNNNNNGG 1 cut(s) 834
AflII CTTAAG 1 cut(s) 829
AgsI TTSAA 5 cut(s) 38, 230, 734, 1025, 1093
AjnI CCWGG 1 cut(s) 1002
AleI CACNNNNGTG 1 cut(s) 311
AluBI AGCT 8 cut(s) 566, 596, 692, 709, 789, 910, 994, 1114
AluI AGCT 8 cut(s) 566, 596, 692, 709, 789, 910, 994, 1114
Alw21I GWGCWC 1 cut(s) 651
Alw26I GTCTC 6 cut(s) 67, 159, 416, 544, 890, 1026
AlwI GGATC 4 cut(s) 216, 282, 387, 857
AlwNI CAGNNNCTG 1 cut(s) 692
AoxI GGCC 2 cut(s) 603, 900
ApeKI GCWGC 3 cut(s) 106, 513, 689
AspS9I GGNCC 2 cut(s) 839, 988
AsuC2I CCSGG 1 cut(s) 1085
AvaII GGWCC 2 cut(s) 839, 988
BbsI GAAGAC 1 cut(s) 816
Bbv12I GWGCWC 1 cut(s) 651
BbvI GCAGC 3 cut(s) 118, 525, 701
BccI CCATC 2 cut(s) 254, 813
BceAI ACGGC 1 cut(s) 915
BciT130I CCWGG 1 cut(s) 1004
BciVI GTATCC 1 cut(s) 427
BcnI CCSGG 1 cut(s) 1085
BcoDI GTCTC 6 cut(s) 67, 159, 416, 544, 890, 1026
BfaI CTAG 7 cut(s) 11, 87, 201, 255, 369, 816, 1059
BfmI CTRYAG 2 cut(s) 531, 1041
BfrI CTTAAG 1 cut(s) 829
BfuI GTATCC 1 cut(s) 427
BglII AGATCT 1 cut(s) 527
BisI GCNGC 3 cut(s) 107, 514, 690
BlsI GCNGC 3 cut(s) 108, 515, 691
Bme1390I CCNGG 2 cut(s) 1004, 1085
Bme18I GGWCC 2 cut(s) 839, 988
BmgT120I GGNCC 2 cut(s) 839, 988
BmiI GGNNCC 1 cut(s) 840
BmrFI CCNGG 2 cut(s) 1004, 1085
BmrI ACTGGG 1 cut(s) 1105
BmsI GCATC 4 cut(s) 355, 454, 631, 1016
BmuI ACTGGG 1 cut(s) 1105
BpiI GAAGAC 1 cut(s) 816
BpmI CTGGAG 1 cut(s) 447
BpuMI CCSGG 1 cut(s) 1085
Bsa29I ATCGAT 1 cut(s) 753
BsaBI GATNNNNATC 1 cut(s) 444
BsaJI CCNNGG 5 cut(s) 62, 842, 964, 975, 1084
BsaWI WCCGGW 1 cut(s) 1068
Bsc4I CCNNNNNNNGG 1 cut(s) 834
Bse1I ACTGG 3 cut(s) 301, 430, 1100
Bse3DI GCAATG 1 cut(s) 940
Bse8I GATNNNNATC 1 cut(s) 444
BseBI CCWGG 1 cut(s) 1004
BseCI ATCGAT 1 cut(s) 753
BseDI CCNNGG 5 cut(s) 62, 842, 964, 975, 1084
BseGI GGATG 1 cut(s) 1065
BseJI GATNNNNATC 1 cut(s) 444
BseLI CCNNNNNNNGG 1 cut(s) 834
BseMI GCAATG 1 cut(s) 940
BseMII CTCAG 3 cut(s) 93, 197, 906
BseNI ACTGG 3 cut(s) 301, 430, 1100
BseXI GCAGC 3 cut(s) 118, 525, 701
BseYI CCCAGC 1 cut(s) 1110
Bsh1236I CGCG 1 cut(s) 797
BshFI GGCC 2 cut(s) 605, 902
BshVI ATCGAT 1 cut(s) 753
BsiHKAI GWGCWC 1 cut(s) 651
BsiSI CCGG 2 cut(s) 1069, 1084
BslFI GGGAC 1 cut(s) 852
BslI CCNNNNNNNGG 1 cut(s) 834
BsmAI GTCTC 6 cut(s) 67, 159, 416, 544, 890, 1026
BsmBI CGTCTC 1 cut(s) 890
BsmFI GGGAC 1 cut(s) 852
BsmI GAATGC 1 cut(s) 33
BsnI GGCC 2 cut(s) 605, 902
Bsp1286I GDGCHC 1 cut(s) 651
Bsp143I GATC 7 cut(s) 208, 274, 379, 527, 750, 812, 849
Bsp19I CCATGG 1 cut(s) 62
BspACI CCGC 5 cut(s) 109, 451, 797, 847, 1015
BspANI GGCC 2 cut(s) 605, 902
BspCNI CTCAG 3 cut(s) 94, 196, 905
BspDI ATCGAT 1 cut(s) 753
BspFNI CGCG 1 cut(s) 797
BspHI TCATGA 1 cut(s) 1138
BspLI GGNNCC 1 cut(s) 840
BspPI GGATC 4 cut(s) 216, 282, 387, 857
BspTI CTTAAG 1 cut(s) 829
BsrDI GCAATG 1 cut(s) 940
BsrI ACTGG 3 cut(s) 301, 430, 1100
BssECI CCNNGG 5 cut(s) 62, 842, 964, 975, 1084
BssMI GATC 7 cut(s) 208, 274, 379, 527, 750, 812, 849
BssT1I CCWWGG 3 cut(s) 62, 842, 975
Bst2UI CCWGG 1 cut(s) 1004
Bst4CI ACNGT 1 cut(s) 119
Bst6I CTCTTC 2 cut(s) 56, 65
BstAFI CTTAAG 1 cut(s) 829
BstC8I GCNNGC 1 cut(s) 625
BstDEI CTNAG 4 cut(s) 102, 147, 183, 892
BstDSI CCRYGG 2 cut(s) 62, 964
BstF5I GGATG 1 cut(s) 1065
BstFNI CGCG 1 cut(s) 797
BstKTI GATC 7 cut(s) 211, 277, 382, 530, 753, 815, 852
BstMAI GTCTC 6 cut(s) 67, 159, 416, 544, 890, 1026
BstMBI GATC 7 cut(s) 208, 274, 379, 527, 750, 812, 849
BstMWI GCNNNNNNNGC 2 cut(s) 602, 686
BstNI CCWGG 1 cut(s) 1004
BstSCI CCNGG 2 cut(s) 1002, 1083
BstSFI CTRYAG 2 cut(s) 531, 1041
BstUI CGCG 1 cut(s) 797
BstV1I GCAGC 3 cut(s) 118, 525, 701
BstV2I GAAGAC 1 cut(s) 816
BstX2I RGATCY 2 cut(s) 274, 527
BstXI CCANNNNNNTGG 1 cut(s) 910
BstYI RGATCY 2 cut(s) 274, 527
Bsu15I ATCGAT 1 cut(s) 753
BsuI GTATCC 1 cut(s) 427
BsuRI GGCC 2 cut(s) 605, 902
BsuTUI ATCGAT 1 cut(s) 753
BtgI CCRYGG 2 cut(s) 62, 964
BtgZI GCGATG 1 cut(s) 29
BtsCI GGATG 1 cut(s) 1065
BtsI GCAGTG 1 cut(s) 990
BtsIMutI CAGTG 1 cut(s) 990
Cac8I GCNNGC 1 cut(s) 625
CaiI CAGNNNCTG 1 cut(s) 692
CciI TCATGA 1 cut(s) 1138
Cfr13I GGNCC 2 cut(s) 839, 988
ClaI ATCGAT 1 cut(s) 753
Csp6I GTAC 4 cut(s) 83, 475, 793, 1081
CviAII CATG 3 cut(s) 63, 652, 1139
CviQI GTAC 4 cut(s) 83, 475, 793, 1081
DdeI CTNAG 4 cut(s) 102, 147, 183, 892
DpnI GATC 7 cut(s) 210, 276, 381, 529, 752, 814, 851
DpnII GATC 7 cut(s) 208, 274, 379, 527, 750, 812, 849
EaeI YGGCCR 1 cut(s) 900
Eam1104I CTCTTC 2 cut(s) 56, 65
EarI CTCTTC 2 cut(s) 56, 65
EciI GGCGGA 1 cut(s) 862
Eco130I CCWWGG 3 cut(s) 62, 842, 975
Eco47I GGWCC 2 cut(s) 839, 988
Eco57I CTGAAG 3 cut(s) 189, 719, 1061
EcoRII CCWGG 1 cut(s) 1002
EcoT14I CCWWGG 3 cut(s) 62, 842, 975
ErhI CCWWGG 3 cut(s) 62, 842, 975
Esp3I CGTCTC 1 cut(s) 890
FaeI CATG 3 cut(s) 66, 655, 1142
FaqI GGGAC 1 cut(s) 852
FatI CATG 3 cut(s) 62, 651, 1138
FauI CCCGC 2 cut(s) 102, 444
FblI GTMKAC 2 cut(s) 545, 1133
Fnu4HI GCNGC 3 cut(s) 107, 514, 690
FokI GGATG 1 cut(s) 1052
Fsp4HI GCNGC 3 cut(s) 107, 514, 690
FspBI CTAG 7 cut(s) 11, 87, 201, 255, 369, 816, 1059
GluI GCNGC 3 cut(s) 107, 514, 690
GsaI CCCAGC 1 cut(s) 1114
GsuI CTGGAG 1 cut(s) 447
HaeIII GGCC 2 cut(s) 605, 902
HapII CCGG 2 cut(s) 1069, 1084
Hin1II CATG 3 cut(s) 66, 655, 1142
HincII GTYRAC 2 cut(s) 546, 742
HindII GTYRAC 2 cut(s) 546, 742
HindIII AAGCTT 1 cut(s) 564
HinfI GANTC 9 cut(s) 90, 326, 497, 766, 800, 890, 1062, 1130, 1142
HpaII CCGG 2 cut(s) 1069, 1084
Hpy166II GTNNAC 4 cut(s) 546, 742, 988, 1134
Hpy188I TCNGA 6 cut(s) 103, 132, 159, 331, 481, 895
Hpy188III TCNNGA 5 cut(s) 763, 816, 1031, 1139, 1146
Hpy8I GTNNAC 4 cut(s) 546, 742, 988, 1134
Hpy99I CGWCG 1 cut(s) 550
HpyAV CCTTC 3 cut(s) 329, 400, 932
HpyCH4III ACNGT 1 cut(s) 119
HpyCH4V TGCA 4 cut(s) 280, 627, 644, 933
HpyF10VI GCNNNNNNNGC 2 cut(s) 602, 686
HpyF3I CTNAG 4 cut(s) 102, 147, 183, 892
Hsp92II CATG 3 cut(s) 66, 655, 1142
Kzo9I GATC 7 cut(s) 208, 274, 379, 527, 750, 812, 849
Lsp1109I GCAGC 3 cut(s) 118, 525, 701
LweI GCATC 4 cut(s) 355, 454, 631, 1016
MaeI CTAG 7 cut(s) 11, 87, 201, 255, 369, 816, 1059
MaeIII GTNAC 4 cut(s) 196, 239, 302, 1105
MalI GATC 7 cut(s) 210, 276, 381, 529, 752, 814, 851
MboI GATC 7 cut(s) 208, 274, 379, 527, 750, 812, 849
MboII GAAGA 8 cut(s) 43, 82, 172, 182, 712, 715, 816, 959
MflI RGATCY 2 cut(s) 274, 527
MhlI GDGCHC 1 cut(s) 651
MluCI AATT 1 cut(s) 188
MlyI GAGTC 6 cut(s) 320, 491, 809, 884, 1071, 1139
MnlI CCTC 6 cut(s) 59, 244, 277, 424, 764, 1116
MseI TTAA 4 cut(s) 234, 674, 830, 867
MslI CAYNNNNRTG 1 cut(s) 311
MspA1I CMGCKG 2 cut(s) 109, 692
MspCI CTTAAG 1 cut(s) 829
MspI CCGG 2 cut(s) 1069, 1084
MspR9I CCNGG 2 cut(s) 1004, 1085
Mva1269I GAATGC 1 cut(s) 33
MvaI CCWGG 1 cut(s) 1004
MvnI CGCG 1 cut(s) 797
MwoI GCNNNNNNNGC 2 cut(s) 602, 686
NciI CCSGG 1 cut(s) 1085
NcoI CCATGG 1 cut(s) 62
NdeII GATC 7 cut(s) 208, 274, 379, 527, 750, 812, 849
NlaIII CATG 3 cut(s) 66, 655, 1142
NlaIV GGNNCC 1 cut(s) 840
OliI CACNNNNGTG 1 cut(s) 311
PagI TCATGA 1 cut(s) 1138
PcsI WCGNNNNNNNCGW 1 cut(s) 52
PctI GAATGC 1 cut(s) 33
PfeI GAWTC 2 cut(s) 90, 766
PkrI GCNGC 3 cut(s) 108, 515, 691
PleI GAGTC 6 cut(s) 320, 491, 808, 884, 1070, 1138
PpsI GAGTC 6 cut(s) 320, 491, 808, 884, 1070, 1138
Psp6I CCWGG 1 cut(s) 1002
PspFI CCCAGC 1 cut(s) 1110
PspGI CCWGG 1 cut(s) 1002
PspN4I GGNNCC 1 cut(s) 840
PspPI GGNCC 2 cut(s) 839, 988
PstNI CAGNNNCTG 1 cut(s) 692
PsuI RGATCY 2 cut(s) 274, 527
PvuII CAGCTG 1 cut(s) 692
RsaI GTAC 4 cut(s) 84, 476, 794, 1082
RsaNI GTAC 4 cut(s) 83, 475, 793, 1081
RseI CAYNNNNRTG 1 cut(s) 311
SalI GTCGAC 1 cut(s) 544
SaqAI TTAA 4 cut(s) 234, 674, 830, 867
SatI GCNGC 3 cut(s) 107, 514, 690
Sau3AI GATC 7 cut(s) 208, 274, 379, 527, 750, 812, 849
Sau96I GGNCC 2 cut(s) 839, 988
SchI GAGTC 6 cut(s) 320, 491, 809, 884, 1071, 1139
ScrFI CCNGG 2 cut(s) 1004, 1085
SduI GDGCHC 1 cut(s) 651
SfaNI GCATC 4 cut(s) 355, 454, 631, 1016
SfcI CTRYAG 2 cut(s) 531, 1041
SinI GGWCC 2 cut(s) 839, 988
SmiMI CAYNNNNRTG 1 cut(s) 311
SmlI CTYRAG 1 cut(s) 829
SmoI CTYRAG 1 cut(s) 829
Sse9I AATT 1 cut(s) 188
SsiI CCGC 5 cut(s) 109, 451, 797, 847, 1015
SspMI CTAG 7 cut(s) 11, 87, 201, 255, 369, 816, 1059
StyD4I CCNGG 2 cut(s) 1002, 1083
StyI CCWWGG 3 cut(s) 62, 842, 975
TaaI ACNGT 1 cut(s) 119
TaqI TCGA 5 cut(s) 545, 753, 769, 811, 1030
TasI AATT 1 cut(s) 188
TatI WGTACW 1 cut(s) 474
TfiI GAWTC 2 cut(s) 90, 766
Tru1I TTAA 4 cut(s) 234, 674, 830, 867
Tru9I TTAA 4 cut(s) 234, 674, 830, 867
TscAI CASTG 1 cut(s) 990
TseI GCWGC 3 cut(s) 106, 513, 689
TspDTI ATGAA 6 cut(s) 111, 348, 434, 522, 951, 960
TspGWI ACGGA 1 cut(s) 44
TspRI CASTG 1 cut(s) 990
Vha464I CTTAAG 1 cut(s) 829
VpaK11BI GGWCC 2 cut(s) 839, 988
XbaI TCTAGA 1 cut(s) 815
XcmI CCANNNNNNNNNTGG 1 cut(s) 982
XmiI GTMKAC 2 cut(s) 545, 1133
XspI CTAG 7 cut(s) 11, 87, 201, 255, 369, 816, 1059
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.