Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0009626

Physical Location & Seq

Genomic Coordinates Reverse (-)

2230622 .. 2233879

Gene Structure 3258 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g02850.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

ATGACAATTCACGCGGGAATCCTCTGCTTCAAAACCCAATTTCAGTTTCCCTGTCGGCTGCTCCCCCTGACCTGGGTCATTGACAGTTTGTATTGTATTACTAAGTTTGTCATTTGTTGGGATAGGAGGAAATGTGCCATCACATGCTTGCAGAACAGAGATTACAGTTCCTCGGCTCCAGTTAGGTACATTCCGAAAAATTCTTCGAAAGTTAAGAAATTGGAAAGTTCTCCACAGAAAAAGGGTTCTGAAGAGAAAGAGTTCCGTGAATTTCCGGAGGTTAAACAGAGTGGAAGAAGGGTGCGTAAAAGCCTGGACTTCAATGAGAAGCCTCAAAATCAGAATCAAAATCGATATAGTAATTCATCGTTTAGTGATGCTCAGAAAGCTCCAGATTTGAAAGATCAGATGAATCATCTTTCGGGGGCTGTAGGCTATGAACTCATGGAAGAGCCTGAAGAGGTTTTTGAAGTAAAGGGTTCTAAAGAAAAAGAGTTTCCTGAATTTTCGGATGTGAGCGCACTGAAGAGTGAGGTTAAACATTGGGGAAGAGGTGTGCATAAAAATAGGGTACTGAATGAGAAGCCTCAGGATCAGAATCAACAGAGTTCTCAAAAAAAGAATCGGAATCAAATTGAATATGGTAACTCATTGTTTAATGACGTTCAGAAAGAATCTCCAGAGCTGGAAGATCGGAATGATCGTATTTTAGGGGCAATAGGCTATGAACTCATTGAGGAGCCTGAGGAGGTTTTCGAAGAGTTAAATATCCTTGAAGAGAAAAATTGTCCTGAGCAAGGTGTAGTGCAAGGTATAAAGCATGATGCTGAGCAAGTGGCAATAAAATTACTTGCAACCAGGGCTTTCACGGCAGTTGAACTGAGAAAGAAGTTATGTGGAAAGAATTTTCCTCTAGGTACCGTCGAGGCAGTGATAGATGACTTCATCAGCAGAGGCCTAATCAATGATAGCTTGTATGCGGAAGCATTTTCTCGTTCCAGATGGTCTTCCTTAAGTTGGGGACCAAGGCGAATAAAGCAAGCACTTTTTAACAAGGGAGTGAGTAATGTTGATGCTGAGAAGGCAATTAAACTGGTTTTTGAGGAGGGAAAACCAGATGAGGATGAGGAGTTAATTCATGGCCTGTCGAAGCTCTCAATGGATAATTTAGTTGTTCAAGCCTCAAAGCAGTGGCTCCGGGGTCAAGAAGTGCCTAAAGAAACGAGGAAATCGAGGATTGTTCGTTGGCTTCAGTATCGCGGATTCAGCTGGGGTGTCATCAGCTTCATATTAAAGAAGTTAGAATCTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RecX

Protein Analysis

438

Amino Acids

50.36

Weight (kDa)

8.25

Isoelectric Point (pI)

47.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009626)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13226
fragaria_vesca	FvH4_3g42180 FvH4_3g42180 FvH4_3g42180 FvH4_3g42180
malus_domestica	MD03G1037000.v1.1 MD03G1037100.v1.1
prunus_persica	Prupe.6G029100_v2.0.a1 Prupe.6G029900_v2.0.a1 Prupe.6G082900_v2.0.a1 Prupe.6G083000_v2.0.a1
pyrus_communis	pycom03g02850
rosa_chinensis	RchiOBHm_Chr5g0075451
rosa_laevigata	RLG00000036564
rosa_multiflora	Rmu_sc0000770.1_g000005
rosa_roxburghii	Rroxscaffold_1G00006050
rosa_rugosa	Rorug05G0439700
rosa_samantha	Rh5AG496700 Rh5BG518000 Rh5CG541500 Rh5DG531300
rosa_wichuraiana	Rw5G046070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	917
AccB1I	GGYRCC	1 cut(s)	917
AccII	CGCG	2 cut(s)	14, 1260
AccIII	TCCGGA	1 cut(s)	274
AciI	CCGC	3 cut(s)	14, 980, 1260
AclWI	GGATC	1 cut(s)	600
AcsI	RAATTY	4 cut(s)	199, 269, 503, 904
AcuI	CTGAAG	4 cut(s)	270, 477, 545, 1235
AfaI	GTAC	3 cut(s)	188, 573, 919
AfiI	CCNNNNNNNGG	4 cut(s)	72, 73, 797, 1017
AflII	CTTAAG	1 cut(s)	1012
AgsI	TTSAA	8 cut(s)	31, 322, 400, 470, 638, 776, 878, 1178
AjnI	CCWGG	3 cut(s)	71, 312, 857
AjuI	GAANNNNNNNTTGG	2 cut(s)	30, 62
AluBI	AGCT	6 cut(s)	389, 685, 972, 1153, 1269, 1284
AluI	AGCT	6 cut(s)	389, 685, 972, 1153, 1269, 1284
AlwI	GGATC	1 cut(s)	600
Aor13HI	TCCGGA	1 cut(s)	274
AoxI	GGCC	2 cut(s)	955, 1141
ApeKI	GCWGC	1 cut(s)	58
ApoI	RAATTY	4 cut(s)	199, 269, 503, 904
Asp700I	GAANNNNTTC	1 cut(s)	260
Asp718I	GGTACC	1 cut(s)	917
AspLEI	GCGC	1 cut(s)	521
AspS9I	GGNCC	1 cut(s)	1022
AsuC2I	CCSGG	1 cut(s)	1199
AsuII	TTCGAA	2 cut(s)	206, 756
AvaII	GGWCC	1 cut(s)	1022
AxyI	CCTNAGG	2 cut(s)	588, 744
BanI	GGYRCC	1 cut(s)	917
BbsI	GAAGAC	1 cut(s)	999
BbvI	GCAGC	1 cut(s)	45
BccI	CCATC	2 cut(s)	146, 996
BceAI	ACGGC	1 cut(s)	885
BciT130I	CCWGG	3 cut(s)	73, 314, 859
BcnI	CCSGG	1 cut(s)	1199
BfaI	CTAG	1 cut(s)	914
BfmI	CTRYAG	1 cut(s)	429
BfrI	CTTAAG	1 cut(s)	1012
BisI	GCNGC	1 cut(s)	59
BlpI	GCTNAGC	1 cut(s)	828
BlsI	GCNGC	1 cut(s)	60
Bme1390I	CCNGG	4 cut(s)	73, 314, 859, 1199
Bme18I	GGWCC	1 cut(s)	1022
BmgT120I	GGNCC	1 cut(s)	1022
BmiI	GGNNCC	5 cut(s)	177, 741, 919, 1023, 1196
BmrFI	CCNGG	4 cut(s)	73, 314, 859, 1199
BmsI	GCATC	3 cut(s)	367, 814, 1063
BoxI	GACNNNNGTC	1 cut(s)	74
BpiI	GAAGAC	1 cut(s)	999
BpmI	CTGGAG	3 cut(s)	162, 375, 663
Bpu10I	CCTNAGC	1 cut(s)	792
Bpu1102I	GCTNAGC	1 cut(s)	828
Bpu14I	TTCGAA	2 cut(s)	206, 756
BpuMI	CCSGG	1 cut(s)	1199
Bsa29I	ATCGAT	1 cut(s)	352
BsaBI	GATNNNNATC	1 cut(s)	597
BsaJI	CCNNGG	5 cut(s)	72, 171, 858, 1025, 1198
BsaWI	WCCGGW	1 cut(s)	274
BsaXI	ACNNNNNCTCC	2 cut(s)	118, 148
Bsc4I	CCNNNNNNNGG	4 cut(s)	72, 73, 797, 1017
Bse1I	ACTGG	2 cut(s)	179, 1098
Bse21I	CCTNAGG	2 cut(s)	588, 744
Bse8I	GATNNNNATC	1 cut(s)	597
BseAI	TCCGGA	1 cut(s)	274
BseBI	CCWGG	3 cut(s)	73, 314, 859
BseCI	ATCGAT	1 cut(s)	352
BseDI	CCNNGG	5 cut(s)	72, 171, 858, 1025, 1198
BseGI	GGATG	2 cut(s)	517, 1129
BseJI	GATNNNNATC	1 cut(s)	597
BseLI	CCNNNNNNNGG	4 cut(s)	72, 73, 797, 1017
BseMII	CTCAG	8 cut(s)	395, 602, 735, 783, 819, 872, 1068, 1299
BseNI	ACTGG	2 cut(s)	179, 1098
BseRI	GAGGAG	4 cut(s)	752, 761, 1118, 1142
BseXI	GCAGC	1 cut(s)	45
BseYI	CCCAGC	1 cut(s)	1269
Bsh1236I	CGCG	2 cut(s)	14, 1260
BshFI	GGCC	2 cut(s)	957, 1143
BshNI	GGYRCC	1 cut(s)	917
BshVI	ATCGAT	1 cut(s)	352
BsiSI	CCGG	2 cut(s)	275, 1198
BslFI	GGGAC	1 cut(s)	1035
BslI	CCNNNNNNNGG	4 cut(s)	72, 73, 797, 1017
BsmFI	GGGAC	1 cut(s)	1035
BsnI	GGCC	2 cut(s)	957, 1143
Bsp119I	TTCGAA	2 cut(s)	206, 756
Bsp13I	TCCGGA	1 cut(s)	274
Bsp143I	GATC	4 cut(s)	403, 592, 691, 700
Bsp1720I	GCTNAGC	1 cut(s)	828
BspACI	CCGC	3 cut(s)	14, 980, 1260
BspANI	GGCC	2 cut(s)	957, 1143
BspCNI	CTCAG	8 cut(s)	394, 601, 736, 784, 820, 873, 1069, 1300
BspDI	ATCGAT	1 cut(s)	352
BspEI	TCCGGA	1 cut(s)	274
BspFNI	CGCG	2 cut(s)	14, 1260
BspLI	GGNNCC	5 cut(s)	177, 741, 919, 1023, 1196
BspPI	GGATC	1 cut(s)	600
BspQI	GCTCTTC	1 cut(s)	444
BspT104I	TTCGAA	2 cut(s)	206, 756
BspT107I	GGYRCC	1 cut(s)	917
BspTI	CTTAAG	1 cut(s)	1012
BsrI	ACTGG	2 cut(s)	179, 1098
BssECI	CCNNGG	5 cut(s)	72, 171, 858, 1025, 1198
BssMI	GATC	4 cut(s)	403, 592, 691, 700
BssT1I	CCWWGG	1 cut(s)	1025
Bst2UI	CCWGG	3 cut(s)	73, 314, 859
Bst4CI	ACNGT	3 cut(s)	86, 167, 922
Bst6I	CTCTTC	7 cut(s)	246, 444, 453, 521, 544, 753, 771
BstAFI	CTTAAG	1 cut(s)	1012
BstBI	TTCGAA	2 cut(s)	206, 756
BstC8I	GCNNGC	2 cut(s)	149, 1041
BstDEI	CTNAG	9 cut(s)	102, 381, 588, 744, 792, 828, 881, 1077, 1308
BstENI	CCTNNNNNAGG	1 cut(s)	795
BstF5I	GGATG	2 cut(s)	517, 1129
BstFNI	CGCG	2 cut(s)	14, 1260
BstHHI	GCGC	1 cut(s)	521
BstKTI	GATC	4 cut(s)	406, 595, 694, 703
BstMBI	GATC	4 cut(s)	403, 592, 691, 700
BstMWI	GCNNNNNNNGC	6 cut(s)	386, 860, 869, 1036, 1082, 1266
BstNI	CCWGG	3 cut(s)	73, 314, 859
BstNSI	RCATGY	1 cut(s)	147
BstPAI	GACNNNNGTC	1 cut(s)	74
BstSCI	CCNGG	4 cut(s)	71, 312, 857, 1197
BstSFI	CTRYAG	1 cut(s)	429
BstUI	CGCG	2 cut(s)	14, 1260
BstV1I	GCAGC	1 cut(s)	45
BstV2I	GAAGAC	1 cut(s)	999
Bsu15I	ATCGAT	1 cut(s)	352
Bsu36I	CCTNAGG	2 cut(s)	588, 744
BsuRI	GGCC	2 cut(s)	957, 1143
BsuTUI	ATCGAT	1 cut(s)	352
BtsCI	GGATG	2 cut(s)	517, 1129
BtsI	GCAGTG	2 cut(s)	936, 1196
BtsIMutI	CAGTG	3 cut(s)	521, 936, 1196
Cac8I	GCNNGC	2 cut(s)	149, 1041
CfoI	GCGC	1 cut(s)	521
Cfr13I	GGNCC	1 cut(s)	1022
ClaI	ATCGAT	1 cut(s)	352
Csp6I	GTAC	3 cut(s)	187, 572, 918
CviAII	CATG	4 cut(s)	144, 445, 821, 1139
CviQI	GTAC	3 cut(s)	187, 572, 918
DdeI	CTNAG	9 cut(s)	102, 381, 588, 744, 792, 828, 881, 1077, 1308
DpnI	GATC	4 cut(s)	405, 594, 693, 702
DpnII	GATC	4 cut(s)	403, 592, 691, 700
Eam1104I	CTCTTC	7 cut(s)	246, 444, 453, 521, 544, 753, 771
EarI	CTCTTC	7 cut(s)	246, 444, 453, 521, 544, 753, 771
Eco130I	CCWWGG	1 cut(s)	1025
Eco147I	AGGCCT	1 cut(s)	957
Eco47I	GGWCC	1 cut(s)	1022
Eco57I	CTGAAG	4 cut(s)	270, 477, 545, 1235
Eco81I	CCTNAGG	2 cut(s)	588, 744
EcoNI	CCTNNNNNAGG	1 cut(s)	795
EcoRII	CCWGG	3 cut(s)	71, 312, 857
EcoT14I	CCWWGG	1 cut(s)	1025
ErhI	CCWWGG	1 cut(s)	1025
FaeI	CATG	4 cut(s)	147, 448, 824, 1142
FaqI	GGGAC	1 cut(s)	1035
FatI	CATG	4 cut(s)	143, 444, 820, 1138
FauI	CCCGC	1 cut(s)	7
Fnu4HI	GCNGC	1 cut(s)	59
FokI	GGATG	2 cut(s)	524, 1136
Fsp4HI	GCNGC	1 cut(s)	59
FspBI	CTAG	1 cut(s)	914
GlaI	GCGC	1 cut(s)	520
GluI	GCNGC	1 cut(s)	59
GsaI	CCCAGC	1 cut(s)	1273
GsuI	CTGGAG	3 cut(s)	162, 375, 663
HaeIII	GGCC	2 cut(s)	957, 1143
HapII	CCGG	2 cut(s)	275, 1198
HhaI	GCGC	1 cut(s)	521
Hin1II	CATG	4 cut(s)	147, 448, 824, 1142
Hin6I	GCGC	1 cut(s)	519
HinP1I	GCGC	1 cut(s)	519
HinfI	GANTC	9 cut(s)	18, 343, 412, 598, 622, 628, 674, 1263, 1304
HpaII	CCGG	2 cut(s)	275, 1198
Hpy188III	TCNNGA	8 cut(s)	275, 392, 500, 590, 680, 791, 999, 1205
Hpy99I	CGWCG	1 cut(s)	926
HpyAV	CCTTC	2 cut(s)	291, 1075
HpyCH4III	ACNGT	3 cut(s)	86, 167, 922
HpyCH4IV	ACGT	1 cut(s)	663
HpyCH4V	TGCA	4 cut(s)	151, 559, 808, 854
HpyF10VI	GCNNNNNNNGC	6 cut(s)	386, 860, 869, 1036, 1082, 1266
HpyF3I	CTNAG	9 cut(s)	102, 381, 588, 744, 792, 828, 881, 1077, 1308
HpySE526I	ACGT	1 cut(s)	663
Hsp92II	CATG	4 cut(s)	147, 448, 824, 1142
HspAI	GCGC	1 cut(s)	519
Kpn2I	TCCGGA	1 cut(s)	274
KpnI	GGTACC	1 cut(s)	921
Kzo9I	GATC	4 cut(s)	403, 592, 691, 700
LguI	GCTCTTC	1 cut(s)	444
LmnI	GCTCC	5 cut(s)	66, 181, 394, 739, 1200
Lsp1109I	GCAGC	1 cut(s)	45
LweI	GCATC	3 cut(s)	367, 814, 1063
MaeI	CTAG	1 cut(s)	914
MaeII	ACGT	1 cut(s)	663
MaeIII	GTNAC	1 cut(s)	644
MalI	GATC	4 cut(s)	405, 594, 693, 702
MboI	GATC	4 cut(s)	403, 592, 691, 700
MroI	TCCGGA	1 cut(s)	274
MroXI	GAANNNNTTC	1 cut(s)	260
MspA1I	CMGCKG	1 cut(s)	1269
MspCI	CTTAAG	1 cut(s)	1012
MspI	CCGG	2 cut(s)	275, 1198
MspR9I	CCNGG	4 cut(s)	73, 314, 859, 1199
MvaI	CCWGG	3 cut(s)	73, 314, 859
MvnI	CGCG	2 cut(s)	14, 1260
MwoI	GCNNNNNNNGC	6 cut(s)	386, 860, 869, 1036, 1082, 1266
NciI	CCSGG	1 cut(s)	1199
NdeII	GATC	4 cut(s)	403, 592, 691, 700
NlaIII	CATG	4 cut(s)	147, 448, 824, 1142
NlaIV	GGNNCC	5 cut(s)	177, 741, 919, 1023, 1196
NmeAIII	GCCGAG	1 cut(s)	152
NspI	RCATGY	1 cut(s)	147
NspV	TTCGAA	2 cut(s)	206, 756
PceI	AGGCCT	1 cut(s)	957
PciSI	GCTCTTC	1 cut(s)	444
PcsI	WCGNNNNNNNCGW	2 cut(s)	700, 1229
PdmI	GAANNNNTTC	1 cut(s)	260
PfeI	GAWTC	9 cut(s)	18, 343, 412, 598, 622, 628, 674, 1263, 1304
PkrI	GCNGC	1 cut(s)	60
PshAI	GACNNNNGTC	1 cut(s)	74
Psp6I	CCWGG	3 cut(s)	71, 312, 857
PspFI	CCCAGC	1 cut(s)	1269
PspGI	CCWGG	3 cut(s)	71, 312, 857
PspN4I	GGNNCC	5 cut(s)	177, 741, 919, 1023, 1196
PspPI	GGNCC	1 cut(s)	1022
PsrI	GAACNNNNNNTAC	2 cut(s)	146, 178
PvuII	CAGCTG	1 cut(s)	1269
RsaI	GTAC	3 cut(s)	188, 573, 919
RsaNI	GTAC	3 cut(s)	187, 572, 918
SapI	GCTCTTC	1 cut(s)	444
SatI	GCNGC	1 cut(s)	59
Sau3AI	GATC	4 cut(s)	403, 592, 691, 700
Sau96I	GGNCC	1 cut(s)	1022
ScrFI	CCNGG	4 cut(s)	73, 314, 859, 1199
SfaNI	GCATC	3 cut(s)	367, 814, 1063
SfcI	CTRYAG	1 cut(s)	429
SfuI	TTCGAA	2 cut(s)	206, 756
SinI	GGWCC	1 cut(s)	1022
SmlI	CTYRAG	1 cut(s)	1012
SmoI	CTYRAG	1 cut(s)	1012
SseBI	AGGCCT	1 cut(s)	957
SsiI	CCGC	3 cut(s)	14, 980, 1260
SspMI	CTAG	1 cut(s)	914
StuI	AGGCCT	1 cut(s)	957
StyD4I	CCNGG	4 cut(s)	71, 312, 857, 1197
StyI	CCWWGG	1 cut(s)	1025
TaaI	ACNGT	3 cut(s)	86, 167, 922
TaiI	ACGT	1 cut(s)	666
TaqI	TCGA	6 cut(s)	206, 352, 756, 924, 1148, 1232
TfiI	GAWTC	9 cut(s)	18, 343, 412, 598, 622, 628, 674, 1263, 1304
TscAI	CASTG	3 cut(s)	528, 936, 1196
TseI	GCWGC	1 cut(s)	58
TspDTI	ATGAA	7 cut(s)	354, 425, 453, 741, 934, 1127, 1276
TspGWI	ACGGA	1 cut(s)	254
TspRI	CASTG	3 cut(s)	528, 936, 1196
Vha464I	CTTAAG	1 cut(s)	1012
VpaK11BI	GGWCC	1 cut(s)	1022
XagI	CCTNNNNNAGG	1 cut(s)	795
XapI	RAATTY	4 cut(s)	199, 269, 503, 904
XceI	RCATGY	1 cut(s)	147
XmnI	GAANNNNTTC	1 cut(s)	260
XspI	CTAG	1 cut(s)	914

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.