Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0009626

Physical Location & Seq

Genomic Coordinates Reverse (-)

2345332 .. 2347522

Gene Structure 2191 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G029900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGATGATTATCCTCCTTATCGTCATCAGCTTGCGCCTGATCGTCATTTTGAATGGAATGGTACATCTTTGCCTGCCTATATCATGTCAAAGGATTTTACATCACTCACACCTATTCAACCTCTGCGCTTGCCCGATGATCTGTTACCTACTCAACCAGGCTGTGAAAGGTTGCGTGATCTGTATATGGCTAAACCCCGTGAAATAGATTATAGGATTGTCCATCTAGGAGGTCAAGAGATATGTCTGGTATTGTCTATCGACACTGGATTTGAGCCCAACGGCGGAGTTTTGAGGAAGATGCCCATTTTTGTGGCAAGTTTCGAATTTCAACTTTCAGACAGTAAAGACTTGTTAACCATCAAAACAGGGTCTTGTAGTGTTCAATGTTTTCTACTTGGTGCCTGCTCTTCAATGGCAATAAAATTACTTGCAACCAGGGCTTTCACAGCAGTTGAACTGAGAAAGAAATTACATGGAAATAACTTTACTCTAGATACCGTTGAGGCAGTGATAAATGACTTCATTAACAGATGGTCTTCCTTTAGTTGGGGACCATACTACTTTTCAGCATTTTTCAGCAAGGGAGTGAGTAAACTTGATGCTGAGAATGCAAACAAATTGGTTTTTGAGGAAGGAGAATCAGATAATGATCAGAAGTTAGTTCATGGCCTGTCAAGGCTGTCAATGGATAATTTACTTGTTCAGGCCTCAAAGCAGTGGCTTCGAGGTCTAGAAGTGCCTAAAGAGACAAGGAAATCAAGGATTGTCCTTTGGCTTCAGTATCGTGGATTCAGCTGGGATGTTATTGGCTTCGTATTAAAGAAGTTAGAATCTCAGTATCCACCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RecX

Protein Analysis

284

Amino Acids

32.28

Weight (kDa)

6.96

Isoelectric Point (pI)

34.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009626)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13226
fragaria_vesca	FvH4_3g42180 FvH4_3g42180 FvH4_3g42180 FvH4_3g42180
malus_domestica	MD03G1037000.v1.1 MD03G1037100.v1.1
prunus_persica	Prupe.6G029100_v2.0.a1 Prupe.6G029900_v2.0.a1 Prupe.6G082900_v2.0.a1 Prupe.6G083000_v2.0.a1
pyrus_communis	pycom03g02850
rosa_chinensis	RchiOBHm_Chr5g0075451
rosa_laevigata	RLG00000036564
rosa_multiflora	Rmu_sc0000770.1_g000005
rosa_roxburghii	Rroxscaffold_1G00006050
rosa_rugosa	Rorug05G0439700
rosa_samantha	Rh5AG496700 Rh5BG518000 Rh5CG541500 Rh5DG531300
rosa_wichuraiana	Rw5G046070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	401
AciI	CCGC	1 cut(s)	285
AcsI	RAATTY	1 cut(s)	326
AcuI	CTGAAG	1 cut(s)	764
AfaI	GTAC	1 cut(s)	64
AfiI	CCNNNNNNNGG	2 cut(s)	284, 549
AgsI	TTSAA	6 cut(s)	53, 119, 332, 386, 414, 458
AjnI	CCWGG	2 cut(s)	157, 437
AluBI	AGCT	2 cut(s)	31, 798
AluI	AGCT	2 cut(s)	31, 798
Alw26I	GTCTC	1 cut(s)	743
AoxI	GGCC	2 cut(s)	670, 708
ApoI	RAATTY	1 cut(s)	326
ArsI	GACNNNNNNTTYG	2 cut(s)	254, 286
AspLEI	GCGC	2 cut(s)	37, 129
AspS9I	GGNCC	1 cut(s)	554
AsuII	TTCGAA	1 cut(s)	324
AvaII	GGWCC	1 cut(s)	554
BanI	GGYRCC	1 cut(s)	401
BanII	GRGCYC	1 cut(s)	279
BbsI	GAAGAC	1 cut(s)	531
BccI	CCATC	3 cut(s)	231, 368, 528
BceAI	ACGGC	1 cut(s)	298
BcgI	CGANNNNNNTGC	2 cut(s)	707, 741
BciT130I	CCWGG	2 cut(s)	159, 439
BciVI	GTATCC	1 cut(s)	852
BclI	TGATCA	1 cut(s)	652
BcoDI	GTCTC	1 cut(s)	743
BfaI	CTAG	4 cut(s)	227, 494, 734, 850
BfuI	GTATCC	1 cut(s)	852
Bme1390I	CCNGG	2 cut(s)	159, 439
Bme18I	GGWCC	1 cut(s)	554
BmgT120I	GGNCC	1 cut(s)	554
BmiI	GGNNCC	2 cut(s)	403, 555
BmrFI	CCNGG	2 cut(s)	159, 439
BmsI	GCATC	2 cut(s)	291, 592
BpiI	GAAGAC	1 cut(s)	531
Bpu14I	TTCGAA	1 cut(s)	324
BsaBI	GATNNNNATC	2 cut(s)	9, 651
BsaJI	CCNNGG	1 cut(s)	438
Bsc4I	CCNNNNNNNGG	2 cut(s)	284, 549
Bse1I	ACTGG	1 cut(s)	271
Bse8I	GATNNNNATC	2 cut(s)	9, 651
BseBI	CCWGG	2 cut(s)	159, 439
BseDI	CCNNGG	1 cut(s)	438
BseGI	GGATG	2 cut(s)	10, 808
BseJI	GATNNNNATC	2 cut(s)	9, 651
BseLI	CCNNNNNNNGG	2 cut(s)	284, 549
BseMII	CTCAG	3 cut(s)	452, 597, 851
BseNI	ACTGG	1 cut(s)	271
BseYI	CCCAGC	1 cut(s)	798
BshFI	GGCC	2 cut(s)	672, 710
BshNI	GGYRCC	1 cut(s)	401
BslFI	GGGAC	1 cut(s)	567
BslI	CCNNNNNNNGG	2 cut(s)	284, 549
BsmAI	GTCTC	1 cut(s)	743
BsmFI	GGGAC	1 cut(s)	567
BsmI	GAATGC	1 cut(s)	616
BsnI	GGCC	2 cut(s)	672, 710
Bsp119I	TTCGAA	1 cut(s)	324
Bsp1286I	GDGCHC	1 cut(s)	279
Bsp143I	GATC	4 cut(s)	40, 139, 178, 652
BspACI	CCGC	1 cut(s)	285
BspANI	GGCC	2 cut(s)	672, 710
BspCNI	CTCAG	3 cut(s)	453, 598, 850
BspLI	GGNNCC	2 cut(s)	403, 555
BspQI	GCTCTTC	1 cut(s)	415
BspT104I	TTCGAA	1 cut(s)	324
BspT107I	GGYRCC	1 cut(s)	401
BsrI	ACTGG	1 cut(s)	271
BssECI	CCNNGG	1 cut(s)	438
BssMI	GATC	4 cut(s)	40, 139, 178, 652
Bst2UI	CCWGG	2 cut(s)	159, 439
Bst4CI	ACNGT	2 cut(s)	344, 502
Bst6I	CTCTTC	1 cut(s)	415
BstBI	TTCGAA	1 cut(s)	324
BstC8I	GCNNGC	4 cut(s)	33, 75, 131, 406
BstDEI	CTNAG	3 cut(s)	461, 606, 837
BstF5I	GGATG	2 cut(s)	10, 808
BstHHI	GCGC	2 cut(s)	37, 129
BstKTI	GATC	4 cut(s)	43, 142, 181, 655
BstMAI	GTCTC	1 cut(s)	743
BstMBI	GATC	4 cut(s)	40, 139, 178, 652
BstMWI	GCNNNNNNNGC	3 cut(s)	440, 449, 611
BstNI	CCWGG	2 cut(s)	159, 439
BstSCI	CCNGG	2 cut(s)	157, 437
BstV2I	GAAGAC	1 cut(s)	531
BstXI	CCANNNNNNTGG	1 cut(s)	313
BsuI	GTATCC	1 cut(s)	852
BsuRI	GGCC	2 cut(s)	672, 710
BtsCI	GGATG	2 cut(s)	10, 808
BtsI	GCAGTG	2 cut(s)	516, 725
BtsIMutI	CAGTG	3 cut(s)	264, 516, 725
Cac8I	GCNNGC	4 cut(s)	33, 75, 131, 406
CfoI	GCGC	2 cut(s)	37, 129
Cfr13I	GGNCC	1 cut(s)	554
Csp6I	GTAC	1 cut(s)	63
CviAII	CATG	3 cut(s)	85, 476, 668
CviQI	GTAC	1 cut(s)	63
DdeI	CTNAG	3 cut(s)	461, 606, 837
DpnI	GATC	4 cut(s)	42, 141, 180, 654
DpnII	GATC	4 cut(s)	40, 139, 178, 652
Eam1104I	CTCTTC	1 cut(s)	415
EarI	CTCTTC	1 cut(s)	415
EciI	GGCGGA	1 cut(s)	300
Eco147I	AGGCCT	1 cut(s)	710
Eco24I	GRGCYC	1 cut(s)	279
Eco47I	GGWCC	1 cut(s)	554
Eco57I	CTGAAG	1 cut(s)	764
EcoRII	CCWGG	2 cut(s)	157, 437
EcoT38I	GRGCYC	1 cut(s)	279
FaeI	CATG	3 cut(s)	88, 479, 671
FaiI	YATR	9 cut(s)	81, 86, 186, 188, 213, 244, 477, 559, 669
FaqI	GGGAC	1 cut(s)	567
FatI	CATG	3 cut(s)	84, 475, 667
FbaI	TGATCA	1 cut(s)	652
FokI	GGATG	2 cut(s)	17, 815
FriOI	GRGCYC	1 cut(s)	279
FspBI	CTAG	4 cut(s)	227, 494, 734, 850
GlaI	GCGC	2 cut(s)	36, 128
GsaI	CCCAGC	1 cut(s)	802
HaeIII	GGCC	2 cut(s)	672, 710
HhaI	GCGC	2 cut(s)	37, 129
Hin1II	CATG	3 cut(s)	88, 479, 671
Hin6I	GCGC	2 cut(s)	35, 127
HinP1I	GCGC	2 cut(s)	35, 127
HincII	GTYRAC	1 cut(s)	357
HindII	GTYRAC	1 cut(s)	357
HinfI	GANTC	3 cut(s)	641, 792, 833
HpaI	GTTAAC	1 cut(s)	357
Hpy166II	GTNNAC	2 cut(s)	357, 596
Hpy188I	TCNGA	3 cut(s)	340, 646, 657
Hpy188III	TCNNGA	3 cut(s)	236, 494, 734
Hpy8I	GTNNAC	2 cut(s)	357, 596
HpyAV	CCTTC	1 cut(s)	629
HpyCH4III	ACNGT	2 cut(s)	344, 502
HpyCH4V	TGCA	2 cut(s)	434, 614
HpyF10VI	GCNNNNNNNGC	3 cut(s)	440, 449, 611
HpyF3I	CTNAG	3 cut(s)	461, 606, 837
Hsp92II	CATG	3 cut(s)	88, 479, 671
HspAI	GCGC	2 cut(s)	35, 127
Ksp22I	TGATCA	1 cut(s)	652
KspAI	GTTAAC	1 cut(s)	357
Kzo9I	GATC	4 cut(s)	40, 139, 178, 652
LguI	GCTCTTC	1 cut(s)	415
LweI	GCATC	2 cut(s)	291, 592
MaeI	CTAG	4 cut(s)	227, 494, 734, 850
MaeIII	GTNAC	1 cut(s)	144
MalI	GATC	4 cut(s)	42, 141, 180, 654
MboI	GATC	4 cut(s)	40, 139, 178, 652
MboII	GAAGA	3 cut(s)	310, 402, 531
MhlI	GDGCHC	1 cut(s)	279
MluCI	AATT	5 cut(s)	326, 425, 470, 620, 694
MnlI	CCTC	8 cut(s)	24, 132, 224, 288, 499, 625, 721, 722
MseI	TTAA	3 cut(s)	356, 528, 821
MslI	CAYNNNNRTG	1 cut(s)	311
MspA1I	CMGCKG	1 cut(s)	798
MspR9I	CCNGG	2 cut(s)	159, 439
Mva1269I	GAATGC	1 cut(s)	616
MvaI	CCWGG	2 cut(s)	159, 439
MwoI	GCNNNNNNNGC	3 cut(s)	440, 449, 611
NdeII	GATC	4 cut(s)	40, 139, 178, 652
NlaIII	CATG	3 cut(s)	88, 479, 671
NlaIV	GGNNCC	2 cut(s)	403, 555
NspV	TTCGAA	1 cut(s)	324
PceI	AGGCCT	1 cut(s)	710
PciSI	GCTCTTC	1 cut(s)	415
PctI	GAATGC	1 cut(s)	616
PfeI	GAWTC	3 cut(s)	641, 792, 833
Psp6I	CCWGG	2 cut(s)	157, 437
PspFI	CCCAGC	1 cut(s)	798
PspGI	CCWGG	2 cut(s)	157, 437
PspN4I	GGNNCC	2 cut(s)	403, 555
PspPI	GGNCC	1 cut(s)	554
PvuII	CAGCTG	1 cut(s)	798
RsaI	GTAC	1 cut(s)	64
RsaNI	GTAC	1 cut(s)	63
RseI	CAYNNNNRTG	1 cut(s)	311
SapI	GCTCTTC	1 cut(s)	415
SaqAI	TTAA	3 cut(s)	356, 528, 821
Sau3AI	GATC	4 cut(s)	40, 139, 178, 652
Sau96I	GGNCC	1 cut(s)	554
ScrFI	CCNGG	2 cut(s)	159, 439
SduI	GDGCHC	1 cut(s)	279
SetI	ASST	8 cut(s)	33, 115, 124, 151, 173, 235, 733, 800
SfaNI	GCATC	2 cut(s)	291, 592
SfuI	TTCGAA	1 cut(s)	324
SinI	GGWCC	1 cut(s)	554
SmiMI	CAYNNNNRTG	1 cut(s)	311
Sse9I	AATT	5 cut(s)	326, 425, 470, 620, 694
SseBI	AGGCCT	1 cut(s)	710
SsiI	CCGC	1 cut(s)	285
SspMI	CTAG	4 cut(s)	227, 494, 734, 850
StuI	AGGCCT	1 cut(s)	710
StyD4I	CCNGG	2 cut(s)	157, 437
TaaI	ACNGT	2 cut(s)	344, 502
TaqI	TCGA	3 cut(s)	261, 324, 727
TasI	AATT	5 cut(s)	326, 425, 470, 620, 694
TfiI	GAWTC	3 cut(s)	641, 792, 833
Tru1I	TTAA	3 cut(s)	356, 528, 821
Tru9I	TTAA	3 cut(s)	356, 528, 821
TscAI	CASTG	3 cut(s)	271, 516, 725
TspDTI	ATGAA	2 cut(s)	514, 656
TspRI	CASTG	3 cut(s)	271, 516, 725
VpaK11BI	GGWCC	1 cut(s)	554
XapI	RAATTY	1 cut(s)	326
XbaI	TCTAGA	2 cut(s)	493, 733
XspI	CTAG	4 cut(s)	227, 494, 734, 850

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.