Prupe.6G083000_v2.0.a1

RecX family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0009626
Physical Location & Seq
Reverse (-)
5586438 .. 5588115
1678 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G083000.1

Sequence Viewer

Length: 903 bp
ATGGAGAAGCTGAAGGATCACCCTGATCCGTCGGATAAGTCGAAGAAAGTCTTGTATTTTTGTTTCAGCGAGTATTGTCTAGGCACTGGTGAGGGGTTCGAGATGTTCGACCCAAAATATGACAAATGGGTGACTTTGCCCGAGCCTCCATTTTTCCACAGACGCTACCGTGGACACCACACCGATAGTGTTGTTGTAGGCAGTAATATCTTTGTGTCATGTTTGTCTAGTATCTACCGCTTTGACATGGCTGACAGCCGCCAAATATGGAAAGAGCACTCTTTTACCAACTGCACTGCATTGCCATACGGATGGGATGAGAAAAGTTTAGCCCTGGAAATGAGTGACGGGGATTGGTTGATTTTCACATGTTTCCTAGAATTGAGTTATGACCCTCATGAAATCAAAGACAACCCTTGCTGCGACGATTACGACTGCAACAACTCAAACGTGGATTTTTATCCTCCTTATCGTCATCAGCTTGCGCCTGATCGTCATTTTGAATGGCATGGTACATCTTTGCCTGCCTATATCATGTCAAAGGATTTTACATCACTCACACCTATTCAACCTCTGCGCTTGCCCGATGATCTGTTACCTACTCAACCAGGCTGTGAAAGGTTGCGTGATCTGTATATGGCTAAACCCCGTGAAATAGATTATAGGATCGTCCATCTAGGAGGTCAAGAGATATGTCTGGTATTGTCTATTGACACTGGATTTGAGCCCAACGGCCGAGTTTTGAGGAAGATGCCGATTTTTGTGGCAAGTTTCGAATTTCAACTTTCAGACAGTAAAGACGTGTTAACCATCAAAACGGGGTCTTCTAGTGTTCAGTGTTTTCTACTTGGTGCCCACTCAAGTGCAACTAAATTATCCATGTGTGGTGCCTTTTGGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RecX

Protein Analysis

301

Amino Acids

34.57

Weight (kDa)

5.34

Isoelectric Point (pI)

39.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 851, 887
AciI CCGC 2 cut(s) 238, 259
AclWI GGATC 3 cut(s) 20, 24, 674
AcoI YGGCCR 1 cut(s) 733
AcsI RAATTY 1 cut(s) 776
AcuI CTGAAG 1 cut(s) 32
AfaI GTAC 1 cut(s) 514
AflIII ACRYGT 2 cut(s) 368, 801
AgsI TTSAA 3 cut(s) 503, 569, 782
AjiI CACGTC 1 cut(s) 802
AjnI CCWGG 2 cut(s) 333, 607
AleI CACNNNNGTG 1 cut(s) 861
AluBI AGCT 2 cut(s) 10, 481
AluI AGCT 2 cut(s) 10, 481
Alw21I GWGCWC 1 cut(s) 279
AlwI GGATC 3 cut(s) 20, 24, 674
Ama87I CYCGRG 1 cut(s) 140
AoxI GGCC 1 cut(s) 733
ApeKI GCWGC 1 cut(s) 420
ApoI RAATTY 1 cut(s) 776
ArsI GACNNNNNNTTYG 2 cut(s) 704, 736
AspLEI GCGC 2 cut(s) 487, 579
AsuHPI GGTGA 3 cut(s) 11, 101, 142
AsuII TTCGAA 1 cut(s) 774
AvaI CYCGRG 1 cut(s) 140
BaeGI GKGCMC 1 cut(s) 856
BanI GGYRCC 2 cut(s) 851, 887
BanII GRGCYC 1 cut(s) 729
BbsI GAAGAC 1 cut(s) 816
Bbv12I GWGCWC 1 cut(s) 279
BbvI GCAGC 1 cut(s) 407
BccI CCATC 3 cut(s) 306, 681, 818
BceAI ACGGC 1 cut(s) 748
BciT130I CCWGG 2 cut(s) 335, 609
BfaI CTAG 5 cut(s) 80, 228, 377, 677, 828
BisI GCNGC 2 cut(s) 259, 421
BlsI GCNGC 2 cut(s) 260, 422
Bme1390I CCNGG 2 cut(s) 335, 609
BmeT110I CYCGRG 1 cut(s) 140
BmgBI CACGTC 1 cut(s) 802
BmiI GGNNCC 2 cut(s) 853, 889
BmrFI CCNGG 2 cut(s) 335, 609
BmsI GCATC 1 cut(s) 741
BpiI GAAGAC 1 cut(s) 816
Bpu14I TTCGAA 1 cut(s) 774
BpuEI CTTGAG 1 cut(s) 844
BsaBI GATNNNNATC 1 cut(s) 459
BsaJI CCNNGG 2 cut(s) 169, 333
Bse1I ACTGG 2 cut(s) 91, 721
Bse3DI GCAATG 1 cut(s) 299
Bse8I GATNNNNATC 1 cut(s) 459
BseBI CCWGG 2 cut(s) 335, 609
BseDI CCNNGG 2 cut(s) 169, 333
BseGI GGATG 2 cut(s) 317, 322
BseJI GATNNNNATC 1 cut(s) 459
BseMI GCAATG 1 cut(s) 299
BseNI ACTGG 2 cut(s) 91, 721
BseSI GKGCMC 1 cut(s) 856
BseX3I CGGCCG 1 cut(s) 733
BseXI GCAGC 1 cut(s) 407
BsgI GTGCAG 1 cut(s) 277
Bsh1285I CGRYCG 1 cut(s) 736
BshFI GGCC 1 cut(s) 735
BshNI GGYRCC 2 cut(s) 851, 887
BsiEI CGRYCG 1 cut(s) 736
BsiHKAI GWGCWC 1 cut(s) 279
BsiHKCI CYCGRG 1 cut(s) 140
BsnI GGCC 1 cut(s) 735
BsoBI CYCGRG 1 cut(s) 140
Bsp119I TTCGAA 1 cut(s) 774
Bsp1286I GDGCHC 3 cut(s) 279, 729, 856
Bsp143I GATC 6 cut(s) 16, 25, 490, 589, 628, 666
BspACI CCGC 2 cut(s) 238, 259
BspANI GGCC 1 cut(s) 735
BspHI TCATGA 1 cut(s) 397
BspLI GGNNCC 2 cut(s) 853, 889
BspPI GGATC 3 cut(s) 20, 24, 674
BspT104I TTCGAA 1 cut(s) 774
BspT107I GGYRCC 2 cut(s) 851, 887
BsrDI GCAATG 1 cut(s) 299
BsrI ACTGG 2 cut(s) 91, 721
BssECI CCNNGG 2 cut(s) 169, 333
BssMI GATC 6 cut(s) 16, 25, 490, 589, 628, 666
Bst2UI CCWGG 2 cut(s) 335, 609
Bst4CI ACNGT 2 cut(s) 170, 794
BstBI TTCGAA 1 cut(s) 774
BstC8I GCNNGC 3 cut(s) 483, 525, 581
BstDSI CCRYGG 1 cut(s) 169
BstF5I GGATG 2 cut(s) 317, 322
BstHHI GCGC 2 cut(s) 487, 579
BstKTI GATC 6 cut(s) 19, 28, 493, 592, 631, 669
BstMBI GATC 6 cut(s) 16, 25, 490, 589, 628, 666
BstMCI CGRYCG 1 cut(s) 736
BstNI CCWGG 2 cut(s) 335, 609
BstNSI RCATGY 1 cut(s) 372
BstSCI CCNGG 2 cut(s) 333, 607
BstSLI GKGCMC 1 cut(s) 856
BstV1I GCAGC 1 cut(s) 407
BstV2I GAAGAC 1 cut(s) 816
BstXI CCANNNNNNTGG 1 cut(s) 312
BstZI CGGCCG 1 cut(s) 733
BsuRI GGCC 1 cut(s) 735
BtgI CCRYGG 1 cut(s) 169
BtrI CACGTC 1 cut(s) 802
BtsCI GGATG 2 cut(s) 317, 322
BtsI GCAGTG 1 cut(s) 294
BtsIMutI CAGTG 4 cut(s) 84, 294, 714, 842
Cac8I GCNNGC 3 cut(s) 483, 525, 581
CciI TCATGA 1 cut(s) 397
CfoI GCGC 2 cut(s) 487, 579
CseI GACGC 1 cut(s) 171
Csp6I GTAC 1 cut(s) 513
CviAII CATG 7 cut(s) 219, 247, 369, 398, 509, 535, 880
CviQI GTAC 1 cut(s) 513
DpnI GATC 6 cut(s) 18, 27, 492, 591, 630, 668
DpnII GATC 6 cut(s) 16, 25, 490, 589, 628, 666
EaeI YGGCCR 1 cut(s) 733
EagI CGGCCG 1 cut(s) 733
EclXI CGGCCG 1 cut(s) 733
Eco24I GRGCYC 1 cut(s) 729
Eco52I CGGCCG 1 cut(s) 733
Eco57I CTGAAG 1 cut(s) 32
Eco88I CYCGRG 1 cut(s) 140
EcoRII CCWGG 2 cut(s) 333, 607
EcoT38I GRGCYC 1 cut(s) 729
FaeI CATG 7 cut(s) 222, 250, 372, 401, 512, 538, 883
FalI AAGNNNNNCTT 2 cut(s) 35, 67
FatI CATG 7 cut(s) 218, 246, 368, 397, 508, 534, 879
Fnu4HI GCNGC 2 cut(s) 259, 421
FokI GGATG 2 cut(s) 324, 329
FriOI GRGCYC 1 cut(s) 729
Fsp4HI GCNGC 2 cut(s) 259, 421
FspBI CTAG 5 cut(s) 80, 228, 377, 677, 828
GlaI GCGC 2 cut(s) 486, 578
GluI GCNGC 2 cut(s) 259, 421
HaeIII GGCC 1 cut(s) 735
HgaI GACGC 1 cut(s) 171
HhaI GCGC 2 cut(s) 487, 579
Hin1II CATG 7 cut(s) 222, 250, 372, 401, 512, 538, 883
Hin6I GCGC 2 cut(s) 485, 577
HinP1I GCGC 2 cut(s) 485, 577
HincII GTYRAC 1 cut(s) 807
HindII GTYRAC 1 cut(s) 807
HpaI GTTAAC 1 cut(s) 807
HphI GGTGA 3 cut(s) 11, 101, 142
Hpy166II GTNNAC 2 cut(s) 173, 807
Hpy188I TCNGA 2 cut(s) 34, 790
Hpy188III TCNNGA 3 cut(s) 100, 398, 686
Hpy8I GTNNAC 2 cut(s) 173, 807
Hpy99I CGWCG 2 cut(s) 34, 428
HpyAV CCTTC 1 cut(s) 7
HpyCH4III ACNGT 2 cut(s) 170, 794
HpyCH4IV ACGT 2 cut(s) 450, 801
HpyCH4V TGCA 4 cut(s) 294, 299, 438, 866
HpySE526I ACGT 2 cut(s) 450, 801
Hsp92II CATG 7 cut(s) 222, 250, 372, 401, 512, 538, 883
HspAI GCGC 2 cut(s) 485, 577
KspAI GTTAAC 1 cut(s) 807
Kzo9I GATC 6 cut(s) 16, 25, 490, 589, 628, 666
Lsp1109I GCAGC 1 cut(s) 407
LweI GCATC 1 cut(s) 741
MaeI CTAG 5 cut(s) 80, 228, 377, 677, 828
MaeII ACGT 2 cut(s) 450, 801
MaeIII GTNAC 3 cut(s) 130, 344, 594
MalI GATC 6 cut(s) 18, 27, 492, 591, 630, 668
MboI GATC 6 cut(s) 16, 25, 490, 589, 628, 666
MboII GAAGA 3 cut(s) 55, 760, 816
MhlI GDGCHC 3 cut(s) 279, 729, 856
MluCI AATT 3 cut(s) 380, 776, 872
MmeI TCCRAC 1 cut(s) 12
MnlI CCTC 7 cut(s) 85, 156, 405, 474, 582, 674, 738
MseI TTAA 1 cut(s) 806
MslI CAYNNNNRTG 2 cut(s) 310, 861
MspR9I CCNGG 2 cut(s) 335, 609
MvaI CCWGG 2 cut(s) 335, 609
NdeII GATC 6 cut(s) 16, 25, 490, 589, 628, 666
NlaIII CATG 7 cut(s) 222, 250, 372, 401, 512, 538, 883
NlaIV GGNNCC 2 cut(s) 853, 889
NmeAIII GCCGAG 1 cut(s) 761
NmuCI GTSAC 2 cut(s) 130, 344
NspI RCATGY 1 cut(s) 372
NspV TTCGAA 1 cut(s) 774
OliI CACNNNNGTG 1 cut(s) 861
PagI TCATGA 1 cut(s) 397
PciI ACATGT 1 cut(s) 368
PcsI WCGNNNNNNNCGW 2 cut(s) 38, 105
PkrI GCNGC 2 cut(s) 260, 422
PscI ACATGT 1 cut(s) 368
Psp6I CCWGG 2 cut(s) 333, 607
PspGI CCWGG 2 cut(s) 333, 607
PspN4I GGNNCC 2 cut(s) 853, 889
RsaI GTAC 1 cut(s) 514
RsaNI GTAC 1 cut(s) 513
RseI CAYNNNNRTG 2 cut(s) 310, 861
SaqAI TTAA 1 cut(s) 806
SatI GCNGC 2 cut(s) 259, 421
Sau3AI GATC 6 cut(s) 16, 25, 490, 589, 628, 666
ScrFI CCNGG 2 cut(s) 335, 609
SduI GDGCHC 3 cut(s) 279, 729, 856
SetI ASST 9 cut(s) 12, 453, 483, 565, 574, 601, 623, 685, 804
SfaNI GCATC 1 cut(s) 741
SfuI TTCGAA 1 cut(s) 774
SmiMI CAYNNNNRTG 2 cut(s) 310, 861
SmlI CTYRAG 1 cut(s) 859
SmoI CTYRAG 1 cut(s) 859
Sse9I AATT 3 cut(s) 380, 776, 872
SsiI CCGC 2 cut(s) 238, 259
SspMI CTAG 5 cut(s) 80, 228, 377, 677, 828
StyD4I CCNGG 2 cut(s) 333, 607
TaaI ACNGT 2 cut(s) 170, 794
TaiI ACGT 2 cut(s) 453, 804
TaqI TCGA 4 cut(s) 41, 99, 108, 774
TasI AATT 3 cut(s) 380, 776, 872
TauI GCSGC 1 cut(s) 261
Tru1I TTAA 1 cut(s) 806
Tru9I TTAA 1 cut(s) 806
TscAI CASTG 4 cut(s) 91, 301, 721, 842
TseFI GTSAC 2 cut(s) 130, 344
TseI GCWGC 1 cut(s) 420
Tsp45I GTSAC 2 cut(s) 130, 344
TspDTI ATGAA 1 cut(s) 414
TspGWI ACGGA 2 cut(s) 18, 324
TspRI CASTG 4 cut(s) 91, 301, 721, 842
XapI RAATTY 1 cut(s) 776
XceI RCATGY 1 cut(s) 372
XspI CTAG 5 cut(s) 80, 228, 377, 677, 828
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.