Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000770.1

Orthogroup ID

OG0009626

Physical Location & Seq

Genomic Coordinates Reverse (-)

23626 .. 26402

Gene Structure 2777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000770.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

atggcaatttacgcgggaacgctctgcttcaaaacccaattgcagcttcactgtcgagttttcttcatgccctgggctaggaagaacagtgcaatatcatgcttgaaaaacagagattacagttcatcagttccagctaggtacattccgaagaaatcttctgaagttaacaaatcggaaacttctccgcggagaaagggttctgataaaaaagaatttcgtgagctttcggatggttttgcattgaagagtgaggttaaatatcggagaagtgtacagaactataagaactttgatgagaagcttccctatagtaactcattgtctaatgacgttgagcaagcatctccagagctggaggatcagatcaatcatctatcgggggctgaaggtgatgatgtactcatggaagagcctgaggaggtttctgaagagttgaatgtattgcaaaatagtaaaactacacatgaagttgagaaagcagcaatagaattacttgccggaagggctttcactgcagttgaattgagaaagaaactatgtcgaaagggattttatcttgacaccattgaggcagtgataaaagatttcatgagaagagggctaatcaatgatagcatgtatgcggaagcattttcacgttctagatggtcttcctcaagttggggaccaaggcggataaagcaagcacttttcaccaagggggttagtgaagttgatgctgagaaggcaattaaactggtgtttgaggatagaaaatcagatgaggatggagaatcagatgaggatcaggagttaattcatggcatgtcaaagctctcaatggaccatttatttgttcaggcctcaaaacaatggctccgaggccaagaagttcctaaagagacgagaaaatcaaggattgttcgatggcttcaatatcgtggtttcaactggggtgttatcagctttatattaaagaagttagaatctgagcacccaccctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RecX

Protein Analysis

328

Amino Acids

37.82

Weight (kDa)

8.47

Isoelectric Point (pI)

54.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009626)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13226
fragaria_vesca	FvH4_3g42180 FvH4_3g42180 FvH4_3g42180 FvH4_3g42180
malus_domestica	MD03G1037000.v1.1 MD03G1037100.v1.1
prunus_persica	Prupe.6G029100_v2.0.a1 Prupe.6G029900_v2.0.a1 Prupe.6G082900_v2.0.a1 Prupe.6G083000_v2.0.a1
pyrus_communis	pycom03g02850
rosa_chinensis	RchiOBHm_Chr5g0075451
rosa_laevigata	RLG00000036564
rosa_multiflora	Rmu_sc0000770.1_g000005
rosa_roxburghii	Rroxscaffold_1G00006050
rosa_rugosa	Rorug05G0439700
rosa_samantha	Rh5AG496700 Rh5BG518000 Rh5CG541500 Rh5DG531300
rosa_wichuraiana	Rw5G046070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	14, 190
AciI	CCGC	5 cut(s)	14, 188, 190, 626, 676
AclWI	GGATC	2 cut(s)	369, 795
AcsI	RAATTY	1 cut(s)	215
AcuI	CTGAAG	3 cut(s)	183, 408, 450
AfaI	GTAC	3 cut(s)	143, 276, 402
AfiI	CCNNNNNNNGG	2 cut(s)	78, 663
AgsI	TTSAA	7 cut(s)	31, 106, 247, 439, 524, 917, 931
AjnI	CCWGG	1 cut(s)	71
AjuI	GAANNNNNNNTTGG	2 cut(s)	30, 62
AloI	GAACNNNNNNTCC	2 cut(s)	184, 216
AluBI	AGCT	7 cut(s)	46, 137, 226, 304, 355, 817, 948
AluI	AGCT	7 cut(s)	46, 137, 226, 304, 355, 817, 948
Alw21I	GWGCWC	1 cut(s)	978
Alw26I	GTCTC	1 cut(s)	878
AlwI	GGATC	2 cut(s)	369, 795
AoxI	GGCC	2 cut(s)	843, 865
ApeKI	GCWGC	2 cut(s)	43, 482
ApoI	RAATTY	1 cut(s)	215
ArsI	GACNNNNNNTTYG	2 cut(s)	818, 850
Asp700I	GAANNNNTTC	1 cut(s)	199
AspS9I	GGNCC	2 cut(s)	668, 826
AsuHPI	GGTGA	2 cut(s)	404, 688
AvaII	GGWCC	2 cut(s)	668, 826
AxyI	CCTNAGG	1 cut(s)	417
BbsI	GAAGAC	1 cut(s)	645
Bbv12I	GWGCWC	1 cut(s)	978
BbvI	GCAGC	2 cut(s)	55, 494
BccI	CCATC	4 cut(s)	227, 642, 764, 903
BciT130I	CCWGG	1 cut(s)	73
BcoDI	GTCTC	1 cut(s)	878
BfaI	CTAG	4 cut(s)	78, 138, 645, 985
BfmI	CTRYAG	2 cut(s)	310, 516
BglI	GCCNNNNNGGC	1 cut(s)	506
BisI	GCNGC	2 cut(s)	44, 483
BlsI	GCNGC	2 cut(s)	45, 484
Bme1390I	CCNGG	1 cut(s)	73
Bme18I	GGWCC	2 cut(s)	668, 826
BmgT120I	GGNCC	2 cut(s)	668, 826
BmiI	GGNNCC	2 cut(s)	669, 860
BmrFI	CCNGG	1 cut(s)	73
BmrI	ACTGGG	1 cut(s)	943
BmsI	GCATC	2 cut(s)	353, 709
BmuI	ACTGGG	1 cut(s)	943
BpiI	GAAGAC	1 cut(s)	645
BpmI	CTGGAG	2 cut(s)	333, 377
BpuEI	CTTGAG	1 cut(s)	643
BsaBI	GATNNNNATC	1 cut(s)	786
BsaJI	CCNNGG	6 cut(s)	71, 72, 188, 671, 699, 862
BsaXI	ACNNNNNCTCC	4 cut(s)	184, 214, 843, 873
Bsc4I	CCNNNNNNNGG	2 cut(s)	78, 663
Bse1I	ACTGG	2 cut(s)	744, 938
Bse21I	CCTNAGG	1 cut(s)	417
Bse8I	GATNNNNATC	1 cut(s)	786
BseBI	CCWGG	1 cut(s)	73
BseDI	CCNNGG	6 cut(s)	71, 72, 188, 671, 699, 862
BseGI	GGATG	2 cut(s)	238, 775
BseJI	GATNNNNATC	1 cut(s)	786
BseLI	CCNNNNNNNGG	2 cut(s)	78, 663
BseMII	CTCAG	3 cut(s)	408, 714, 963
BseNI	ACTGG	2 cut(s)	744, 938
BseRI	GAGGAG	1 cut(s)	434
BseXI	GCAGC	2 cut(s)	55, 494
Bsh1236I	CGCG	2 cut(s)	14, 190
BshFI	GGCC	2 cut(s)	845, 867
BsiHKAI	GWGCWC	1 cut(s)	978
BsiSI	CCGG	1 cut(s)	501
BslFI	GGGAC	1 cut(s)	681
BslI	CCNNNNNNNGG	2 cut(s)	78, 663
BsmAI	GTCTC	1 cut(s)	878
BsmBI	CGTCTC	1 cut(s)	878
BsmFI	GGGAC	1 cut(s)	681
BsnI	GGCC	2 cut(s)	845, 867
Bsp1286I	GDGCHC	1 cut(s)	978
Bsp1407I	TGTACA	1 cut(s)	274
Bsp143I	GATC	3 cut(s)	361, 366, 787
BspACI	CCGC	5 cut(s)	14, 188, 190, 626, 676
BspANI	GGCC	2 cut(s)	845, 867
BspCNI	CTCAG	3 cut(s)	409, 715, 964
BspFNI	CGCG	2 cut(s)	14, 190
BspHI	TCATGA	1 cut(s)	591
BspLI	GGNNCC	2 cut(s)	669, 860
BspMAI	CTGCAG	1 cut(s)	520
BspPI	GGATC	2 cut(s)	369, 795
BspQI	GCTCTTC	1 cut(s)	405
BsrGI	TGTACA	1 cut(s)	274
BsrI	ACTGG	2 cut(s)	744, 938
BssECI	CCNNGG	6 cut(s)	71, 72, 188, 671, 699, 862
BssMI	GATC	3 cut(s)	361, 366, 787
BssT1I	CCWWGG	2 cut(s)	671, 699
Bst2UI	CCWGG	1 cut(s)	73
Bst4CI	ACNGT	3 cut(s)	53, 89, 122
Bst6I	CTCTTC	4 cut(s)	242, 405, 426, 592
BstAUI	TGTACA	1 cut(s)	274
BstC8I	GCNNGC	2 cut(s)	342, 687
BstDEI	CTNAG	3 cut(s)	417, 723, 972
BstDSI	CCRYGG	1 cut(s)	188
BstENI	CCTNNNNNAGG	1 cut(s)	76
BstF5I	GGATG	2 cut(s)	238, 775
BstFNI	CGCG	2 cut(s)	14, 190
BstKTI	GATC	3 cut(s)	364, 369, 790
BstMAI	GTCTC	1 cut(s)	878
BstMBI	GATC	3 cut(s)	361, 366, 787
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 506, 515, 682, 728
BstNI	CCWGG	1 cut(s)	73
BstNSI	RCATGY	2 cut(s)	622, 811
BstSCI	CCNGG	1 cut(s)	71
BstSFI	CTRYAG	2 cut(s)	310, 516
BstUI	CGCG	2 cut(s)	14, 190
BstV1I	GCAGC	2 cut(s)	55, 494
BstV2I	GAAGAC	1 cut(s)	645
Bsu36I	CCTNAGG	1 cut(s)	417
BsuRI	GGCC	2 cut(s)	845, 867
BtgI	CCRYGG	1 cut(s)	188
BtsCI	GGATG	2 cut(s)	238, 775
BtsI	GCAGTG	2 cut(s)	513, 582
BtsIMutI	CAGTG	4 cut(s)	49, 94, 513, 582
Cac8I	GCNNGC	2 cut(s)	342, 687
CciI	TCATGA	1 cut(s)	591
Cfr13I	GGNCC	2 cut(s)	668, 826
Cfr42I	CCGCGG	1 cut(s)	191
Csp6I	GTAC	3 cut(s)	142, 275, 401
CviAII	CATG	8 cut(s)	67, 99, 406, 467, 592, 619, 803, 808
CviQI	GTAC	3 cut(s)	142, 275, 401
DdeI	CTNAG	3 cut(s)	417, 723, 972
DpnI	GATC	3 cut(s)	363, 368, 789
DpnII	GATC	3 cut(s)	361, 366, 787
Eam1104I	CTCTTC	4 cut(s)	242, 405, 426, 592
EarI	CTCTTC	4 cut(s)	242, 405, 426, 592
EciI	GGCGGA	1 cut(s)	691
Eco130I	CCWWGG	2 cut(s)	671, 699
Eco147I	AGGCCT	1 cut(s)	845
Eco47I	GGWCC	2 cut(s)	668, 826
Eco57I	CTGAAG	3 cut(s)	183, 408, 450
Eco81I	CCTNAGG	1 cut(s)	417
EcoNI	CCTNNNNNAGG	1 cut(s)	76
EcoRII	CCWGG	1 cut(s)	71
EcoT14I	CCWWGG	2 cut(s)	671, 699
ErhI	CCWWGG	2 cut(s)	671, 699
Esp3I	CGTCTC	1 cut(s)	878
FaeI	CATG	8 cut(s)	70, 102, 409, 470, 595, 622, 806, 811
FaqI	GGGAC	1 cut(s)	681
FatI	CATG	8 cut(s)	66, 98, 405, 466, 591, 618, 802, 807
FauI	CCCGC	1 cut(s)	7
Fnu4HI	GCNGC	2 cut(s)	44, 483
FokI	GGATG	2 cut(s)	245, 782
Fsp4HI	GCNGC	2 cut(s)	44, 483
FspBI	CTAG	4 cut(s)	78, 138, 645, 985
GluI	GCNGC	2 cut(s)	44, 483
GsuI	CTGGAG	2 cut(s)	333, 377
HaeIII	GGCC	2 cut(s)	845, 867
HapII	CCGG	1 cut(s)	501
Hin1II	CATG	8 cut(s)	70, 102, 409, 470, 595, 622, 806, 811
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HindIII	AAGCTT	1 cut(s)	302
HinfI	GANTC	2 cut(s)	776, 968
HpaI	GTTAAC	1 cut(s)	169
HpaII	CCGG	1 cut(s)	501
HphI	GGTGA	2 cut(s)	404, 688
Hpy166II	GTNNAC	2 cut(s)	169, 275
Hpy188III	TCNNGA	6 cut(s)	221, 350, 560, 592, 645, 791
Hpy8I	GTNNAC	2 cut(s)	169, 275
HpyAV	CCTTC	3 cut(s)	383, 498, 721
HpyCH4III	ACNGT	3 cut(s)	53, 89, 122
HpyCH4IV	ACGT	2 cut(s)	333, 640
HpyCH4V	TGCA	5 cut(s)	43, 92, 242, 448, 518
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 506, 515, 682, 728
HpyF3I	CTNAG	3 cut(s)	417, 723, 972
HpySE526I	ACGT	2 cut(s)	333, 640
Hsp92II	CATG	8 cut(s)	70, 102, 409, 470, 595, 622, 806, 811
KspAI	GTTAAC	1 cut(s)	169
KspI	CCGCGG	1 cut(s)	191
Kzo9I	GATC	3 cut(s)	361, 366, 787
LguI	GCTCTTC	1 cut(s)	405
LmnI	GCTCC	1 cut(s)	864
Lsp1109I	GCAGC	2 cut(s)	55, 494
LweI	GCATC	2 cut(s)	353, 709
MaeI	CTAG	4 cut(s)	78, 138, 645, 985
MaeII	ACGT	2 cut(s)	333, 640
MaeIII	GTNAC	1 cut(s)	314
MalI	GATC	3 cut(s)	363, 368, 789
MboI	GATC	3 cut(s)	361, 366, 787
MboII	GAAGA	9 cut(s)	55, 94, 150, 163, 259, 422, 443, 609, 645
MfeI	CAATTG	1 cut(s)	38
MhlI	GDGCHC	1 cut(s)	978
MluCI	AATT	7 cut(s)	6, 38, 215, 491, 524, 732, 798
MroXI	GAANNNNTTC	1 cut(s)	199
MseI	TTAA	5 cut(s)	168, 258, 735, 797, 956
MspA1I	CMGCKG	1 cut(s)	190
MspI	CCGG	1 cut(s)	501
MspR9I	CCNGG	1 cut(s)	73
MunI	CAATTG	1 cut(s)	38
MvaI	CCWGG	1 cut(s)	73
MvnI	CGCG	2 cut(s)	14, 190
MwoI	GCNNNNNNNGC	5 cut(s)	11, 506, 515, 682, 728
NdeII	GATC	3 cut(s)	361, 366, 787
NlaIII	CATG	8 cut(s)	70, 102, 409, 470, 595, 622, 806, 811
NlaIV	GGNNCC	2 cut(s)	669, 860
NspI	RCATGY	2 cut(s)	622, 811
PagI	TCATGA	1 cut(s)	591
PasI	CCCWGGG	1 cut(s)	72
PceI	AGGCCT	1 cut(s)	845
PciSI	GCTCTTC	1 cut(s)	405
PdmI	GAANNNNTTC	1 cut(s)	199
PfeI	GAWTC	2 cut(s)	776, 968
PkrI	GCNGC	2 cut(s)	45, 484
Psp6I	CCWGG	1 cut(s)	71
PspGI	CCWGG	1 cut(s)	71
PspN4I	GGNNCC	2 cut(s)	669, 860
PspPI	GGNCC	2 cut(s)	668, 826
PstI	CTGCAG	1 cut(s)	520
RsaI	GTAC	3 cut(s)	143, 276, 402
RsaNI	GTAC	3 cut(s)	142, 275, 401
SacII	CCGCGG	1 cut(s)	191
SapI	GCTCTTC	1 cut(s)	405
SaqAI	TTAA	5 cut(s)	168, 258, 735, 797, 956
SatI	GCNGC	2 cut(s)	44, 483
Sau3AI	GATC	3 cut(s)	361, 366, 787
Sau96I	GGNCC	2 cut(s)	668, 826
ScrFI	CCNGG	1 cut(s)	73
SduI	GDGCHC	1 cut(s)	978
SfaNI	GCATC	2 cut(s)	353, 709
SfcI	CTRYAG	2 cut(s)	310, 516
Sfr303I	CCGCGG	1 cut(s)	191
SgrBI	CCGCGG	1 cut(s)	191
SinI	GGWCC	2 cut(s)	668, 826
SmlI	CTYRAG	1 cut(s)	658
SmoI	CTYRAG	1 cut(s)	658
Sse9I	AATT	7 cut(s)	6, 38, 215, 491, 524, 732, 798
SseBI	AGGCCT	1 cut(s)	845
SsiI	CCGC	5 cut(s)	14, 188, 190, 626, 676
SspMI	CTAG	4 cut(s)	78, 138, 645, 985
StuI	AGGCCT	1 cut(s)	845
StyD4I	CCNGG	1 cut(s)	71
StyI	CCWWGG	2 cut(s)	671, 699
TaaI	ACNGT	3 cut(s)	53, 89, 122
TaiI	ACGT	2 cut(s)	336, 643
TaqI	TCGA	3 cut(s)	55, 544, 907
TasI	AATT	7 cut(s)	6, 38, 215, 491, 524, 732, 798
TatI	WGTACW	2 cut(s)	274, 400
TfiI	GAWTC	2 cut(s)	776, 968
Tru1I	TTAA	5 cut(s)	168, 258, 735, 797, 956
Tru9I	TTAA	5 cut(s)	168, 258, 735, 797, 956
TscAI	CASTG	4 cut(s)	56, 94, 520, 582
TseI	GCWGC	2 cut(s)	43, 482
TspDTI	ATGAA	5 cut(s)	55, 114, 483, 580, 791
TspRI	CASTG	4 cut(s)	56, 94, 520, 582
VpaK11BI	GGWCC	2 cut(s)	668, 826
XagI	CCTNNNNNAGG	1 cut(s)	76
XapI	RAATTY	1 cut(s)	215
XbaI	TCTAGA	1 cut(s)	644
XceI	RCATGY	2 cut(s)	622, 811
XmnI	GAANNNNTTC	1 cut(s)	199
XspI	CTAG	4 cut(s)	78, 138, 645, 985

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.