Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0009626

Physical Location & Seq

Genomic Coordinates Reverse (-)

2251940 .. 2256324

Gene Structure 4385 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G029100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGGGCAGAGAGTGGTTTAAAGTTGAGTTTACAGATGAGGTGGAAATTGAGTATGTTCTCGAGAACCGTCCGTGGTTTGTTCAGGGCTTAATCTTTGCCCTGAAGAGATGGACCCTTGAGTTCTCACCCTTTTATGCCACTGTGGACTCCATTGTGTGCTGGTCTTGTGTCTTCGGTCTCAGAAAATTAACAGATATGGCAATTCACGCTGGAATTCTCTGCTTGAAAACTCAATTTCAGTTTCCCTGTCGAGTGTTCGTCATGTCCTGGGCTAGGGAGAAAATTGCAATCAAGTGCTTGAAAAGCAGAGAATACAGTTCATCGGTTCCCGTTAGGTACTTTCCCAAGAAATCTTCTCAAGTTAAAAAGTCGGAGAATTATCAGCAGACAAAGGTTTCTGAACAAAAGAAGTCCCGTGAATTTCCGGATGCGGGTGCATTGAAGAGTGAGGTTAAACAATGTGGAAGAGGTGTGCAGAAAAATAGGGGCTTCGATGAGAAGCCTCAGAATCAAAATCACGTTTCCTACAAGAACTACTTGTTTAATGATGTTGAGAAAGCATCTCCAGAGTTGGAAGATCAGATTGATCATCTTTCGGGGGATGTAGGCTATGAACTCATGGAAGAACCTGAGGAGGTTTTTGAAGAGTTAAATACTCATCAAGTGAAAAAATGTTATGAAAAGGATGTATTGCATGATGCTGAGAAAGTGGCAATAAAATTACTTGCAACCAGGGCTTTCACAGCAGTTGAACTGAGAAAGAAATTACATGGAAAGAACTTTTCTCTAGATACCGTTGAGGCAGTAATAAATGACTTCACTAGCAGAGGCCTAATCAATGATAGCTTGTATGCGGAAGCATTTTCTCGTTCTAGATGGTCTTCCTCAAGTTGGGGACCAAGGCGGATAAAGCAAGCACTTTTCAGCAAGGGAGTGAGTAAACTTGATGCTGAGAATGCAATTAAATTGGTTTTTGAGGAGGGAGAATCAGATAATGATCAGAAGTTAGTTCATGGTCTGTCAAAGCTCTCAATGGATAATTTACTTGTTCAGGCCTCAAAGCAGTGGCTTCGAGGTCAAGAAGTGCCTAAAGAGACAAGGAAATCAAGGATTGTTCGTTGGCTTCAGTATCGTGGATTCAACTGGGATGTTATTGGCTTCATATTAAAGAAGTTAGAATCTCAGTACCCACCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RecX

Protein Analysis

399

Amino Acids

46.22

Weight (kDa)

8.83

Isoelectric Point (pI)

39.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009626)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13226
fragaria_vesca	FvH4_3g42180 FvH4_3g42180 FvH4_3g42180 FvH4_3g42180
malus_domestica	MD03G1037000.v1.1 MD03G1037100.v1.1
prunus_persica	Prupe.6G029100_v2.0.a1 Prupe.6G029900_v2.0.a1 Prupe.6G082900_v2.0.a1 Prupe.6G083000_v2.0.a1
pyrus_communis	pycom03g02850
rosa_chinensis	RchiOBHm_Chr5g0075451
rosa_laevigata	RLG00000036564
rosa_multiflora	Rmu_sc0000770.1_g000005
rosa_roxburghii	Rroxscaffold_1G00006050
rosa_rugosa	Rorug05G0439700
rosa_samantha	Rh5AG496700 Rh5BG518000 Rh5CG541500 Rh5DG531300
rosa_wichuraiana	Rw5G046070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	424
AciI	CCGC	3 cut(s)	431, 854, 904
AcsI	RAATTY	2 cut(s)	213, 419
AcuI	CTGAAG	2 cut(s)	122, 1109
AfaI	GTAC	2 cut(s)	338, 1187
AfiI	CCNNNNNNNGG	3 cut(s)	273, 431, 891
AgsI	TTSAA	6 cut(s)	226, 301, 442, 644, 752, 1141
AjnI	CCWGG	2 cut(s)	266, 731
AluBI	AGCT	2 cut(s)	846, 1027
AluI	AGCT	2 cut(s)	846, 1027
Alw26I	GTCTC	2 cut(s)	182, 1088
Ama87I	CYCGRG	1 cut(s)	59
Aor13HI	TCCGGA	1 cut(s)	424
AoxI	GGCC	2 cut(s)	829, 1053
ApoI	RAATTY	2 cut(s)	213, 419
AspS9I	GGNCC	2 cut(s)	111, 896
AsuHPI	GGTGA	1 cut(s)	117
AvaI	CYCGRG	1 cut(s)	59
AvaII	GGWCC	2 cut(s)	111, 896
AxyI	CCTNAGG	1 cut(s)	630
BbsI	GAAGAC	2 cut(s)	163, 873
BccI	CCATC	2 cut(s)	102, 870
BcgI	CGANNNNNNTGC	2 cut(s)	1052, 1086
BciT130I	CCWGG	2 cut(s)	268, 733
BclI	TGATCA	2 cut(s)	586, 997
BcoDI	GTCTC	2 cut(s)	182, 1088
BfaI	CTAG	5 cut(s)	273, 788, 822, 873, 1195
Bme1390I	CCNGG	2 cut(s)	268, 733
Bme18I	GGWCC	2 cut(s)	111, 896
BmeT110I	CYCGRG	1 cut(s)	59
BmgT120I	GGNCC	2 cut(s)	111, 896
BmiI	GGNNCC	3 cut(s)	113, 327, 897
BmrFI	CCNGG	2 cut(s)	268, 733
BmrI	ACTGGG	1 cut(s)	1153
BmsI	GCATC	4 cut(s)	418, 569, 688, 937
BmuI	ACTGGG	1 cut(s)	1153
BpiI	GAAGAC	2 cut(s)	163, 873
BpmI	CTGGAG	1 cut(s)	549
BpuEI	CTTGAG	3 cut(s)	137, 342, 871
BsaBI	GATNNNNATC	1 cut(s)	996
BsaI	GGTCTC	1 cut(s)	182
BsaJI	CCNNGG	4 cut(s)	71, 267, 732, 899
BsaWI	WCCGGW	1 cut(s)	424
Bsc4I	CCNNNNNNNGG	3 cut(s)	273, 431, 891
Bse1I	ACTGG	1 cut(s)	1148
Bse21I	CCTNAGG	1 cut(s)	630
Bse8I	GATNNNNATC	1 cut(s)	996
BseAI	TCCGGA	1 cut(s)	424
BseBI	CCWGG	2 cut(s)	268, 733
BseDI	CCNNGG	4 cut(s)	71, 267, 732, 899
BseGI	GGATG	4 cut(s)	433, 607, 691, 1153
BseJI	GATNNNNATC	1 cut(s)	996
BseLI	CCNNNNNNNGG	3 cut(s)	273, 431, 891
BseMII	CTCAG	7 cut(s)	193, 518, 621, 693, 746, 942, 1196
BseNI	ACTGG	1 cut(s)	1148
BseRI	GAGGAG	2 cut(s)	647, 992
BsgI	GTGCAG	1 cut(s)	494
BshFI	GGCC	2 cut(s)	831, 1055
BsiHKCI	CYCGRG	1 cut(s)	59
BsiSI	CCGG	1 cut(s)	425
BslFI	GGGAC	2 cut(s)	397, 909
BslI	CCNNNNNNNGG	3 cut(s)	273, 431, 891
BsmAI	GTCTC	2 cut(s)	182, 1088
BsmFI	GGGAC	2 cut(s)	397, 909
BsmI	GAATGC	1 cut(s)	961
BsnI	GGCC	2 cut(s)	831, 1055
Bso31I	GGTCTC	1 cut(s)	182
BsoBI	CYCGRG	1 cut(s)	59
Bsp13I	TCCGGA	1 cut(s)	424
Bsp143I	GATC	3 cut(s)	577, 586, 997
BspACI	CCGC	3 cut(s)	431, 854, 904
BspANI	GGCC	2 cut(s)	831, 1055
BspCNI	CTCAG	7 cut(s)	192, 517, 622, 694, 747, 943, 1195
BspEI	TCCGGA	1 cut(s)	424
BspLI	GGNNCC	3 cut(s)	113, 327, 897
BspTNI	GGTCTC	1 cut(s)	182
BsrI	ACTGG	1 cut(s)	1148
BssECI	CCNNGG	4 cut(s)	71, 267, 732, 899
BssMI	GATC	3 cut(s)	577, 586, 997
BssT1I	CCWWGG	1 cut(s)	899
Bst2UI	CCWGG	2 cut(s)	268, 733
Bst4CI	ACNGT	4 cut(s)	68, 142, 317, 796
Bst6I	CTCTTC	4 cut(s)	98, 437, 460, 639
BstC8I	GCNNGC	1 cut(s)	915
BstDEI	CTNAG	7 cut(s)	179, 504, 630, 702, 755, 951, 1182
BstDSI	CCRYGG	1 cut(s)	71
BstENI	CCTNNNNNAGG	1 cut(s)	271
BstF5I	GGATG	4 cut(s)	433, 607, 691, 1153
BstKTI	GATC	3 cut(s)	580, 589, 1000
BstMAI	GTCTC	2 cut(s)	182, 1088
BstMBI	GATC	3 cut(s)	577, 586, 997
BstMWI	GCNNNNNNNGC	6 cut(s)	206, 303, 734, 743, 910, 956
BstNI	CCWGG	2 cut(s)	268, 733
BstSCI	CCNGG	2 cut(s)	266, 731
BstV2I	GAAGAC	2 cut(s)	163, 873
Bsu36I	CCTNAGG	1 cut(s)	630
BsuRI	GGCC	2 cut(s)	831, 1055
BtgI	CCRYGG	1 cut(s)	71
BtsCI	GGATG	4 cut(s)	433, 607, 691, 1153
BtsI	GCAGTG	1 cut(s)	1070
BtsIMutI	CAGTG	2 cut(s)	138, 1070
Cac8I	GCNNGC	1 cut(s)	915
Cfr13I	GGNCC	2 cut(s)	111, 896
Csp6I	GTAC	2 cut(s)	337, 1186
CviAII	CATG	5 cut(s)	262, 619, 695, 770, 1013
CviQI	GTAC	2 cut(s)	337, 1186
DdeI	CTNAG	7 cut(s)	179, 504, 630, 702, 755, 951, 1182
DpnI	GATC	3 cut(s)	579, 588, 999
DpnII	GATC	3 cut(s)	577, 586, 997
DraI	TTTAAA	1 cut(s)	19
Eam1104I	CTCTTC	4 cut(s)	98, 437, 460, 639
EarI	CTCTTC	4 cut(s)	98, 437, 460, 639
EciI	GGCGGA	1 cut(s)	919
Eco130I	CCWWGG	1 cut(s)	899
Eco147I	AGGCCT	2 cut(s)	831, 1055
Eco31I	GGTCTC	1 cut(s)	182
Eco47I	GGWCC	2 cut(s)	111, 896
Eco57I	CTGAAG	2 cut(s)	122, 1109
Eco81I	CCTNAGG	1 cut(s)	630
Eco88I	CYCGRG	1 cut(s)	59
EcoNI	CCTNNNNNAGG	1 cut(s)	271
EcoRI	GAATTC	1 cut(s)	213
EcoRII	CCWGG	2 cut(s)	266, 731
EcoT14I	CCWWGG	1 cut(s)	899
ErhI	CCWWGG	1 cut(s)	899
FaeI	CATG	5 cut(s)	265, 622, 698, 773, 1016
FalI	AAGNNNNNCTT	2 cut(s)	521, 553
FaqI	GGGAC	2 cut(s)	397, 909
FatI	CATG	5 cut(s)	261, 618, 694, 769, 1012
FauI	CCCGC	1 cut(s)	424
FbaI	TGATCA	2 cut(s)	586, 997
FokI	GGATG	4 cut(s)	440, 614, 698, 1160
FspBI	CTAG	5 cut(s)	273, 788, 822, 873, 1195
GsuI	CTGGAG	1 cut(s)	549
HaeIII	GGCC	2 cut(s)	831, 1055
HapII	CCGG	1 cut(s)	425
Hin1II	CATG	5 cut(s)	265, 622, 698, 773, 1016
HinfI	GANTC	5 cut(s)	146, 508, 986, 1137, 1178
HpaII	CCGG	1 cut(s)	425
HphI	GGTGA	1 cut(s)	117
Hpy166II	GTNNAC	3 cut(s)	30, 145, 941
Hpy188I	TCNGA	7 cut(s)	182, 373, 400, 507, 582, 991, 1002
Hpy188III	TCNNGA	7 cut(s)	59, 61, 425, 566, 788, 873, 1079
Hpy8I	GTNNAC	3 cut(s)	30, 145, 941
HpyCH4III	ACNGT	4 cut(s)	68, 142, 317, 796
HpyCH4IV	ACGT	1 cut(s)	519
HpyCH4V	TGCA	6 cut(s)	287, 437, 475, 694, 728, 959
HpyF10VI	GCNNNNNNNGC	6 cut(s)	206, 303, 734, 743, 910, 956
HpyF3I	CTNAG	7 cut(s)	179, 504, 630, 702, 755, 951, 1182
HpySE526I	ACGT	1 cut(s)	519
Hsp92II	CATG	5 cut(s)	265, 622, 698, 773, 1016
Kpn2I	TCCGGA	1 cut(s)	424
Ksp22I	TGATCA	2 cut(s)	586, 997
Kzo9I	GATC	3 cut(s)	577, 586, 997
LweI	GCATC	4 cut(s)	418, 569, 688, 937
MaeI	CTAG	5 cut(s)	273, 788, 822, 873, 1195
MaeII	ACGT	1 cut(s)	519
MalI	GATC	3 cut(s)	579, 588, 999
MboI	GATC	3 cut(s)	577, 586, 997
MboII	GAAGA	9 cut(s)	115, 163, 345, 454, 477, 587, 635, 656, 873
MlyI	GAGTC	1 cut(s)	140
MmeI	TCCRAC	2 cut(s)	351, 552
MroI	TCCGGA	1 cut(s)	424
MseI	TTAA	9 cut(s)	18, 89, 188, 363, 453, 543, 650, 963, 1166
MspI	CCGG	1 cut(s)	425
MspR9I	CCNGG	2 cut(s)	268, 733
Mva1269I	GAATGC	1 cut(s)	961
MvaI	CCWGG	2 cut(s)	268, 733
MwoI	GCNNNNNNNGC	6 cut(s)	206, 303, 734, 743, 910, 956
NdeII	GATC	3 cut(s)	577, 586, 997
NlaIII	CATG	5 cut(s)	265, 622, 698, 773, 1016
NlaIV	GGNNCC	3 cut(s)	113, 327, 897
PaeR7I	CTCGAG	1 cut(s)	59
PceI	AGGCCT	2 cut(s)	831, 1055
PctI	GAATGC	1 cut(s)	961
PfeI	GAWTC	4 cut(s)	508, 986, 1137, 1178
PleI	GAGTC	1 cut(s)	140
PpsI	GAGTC	1 cut(s)	140
Psp6I	CCWGG	2 cut(s)	266, 731
PspGI	CCWGG	2 cut(s)	266, 731
PspN4I	GGNNCC	3 cut(s)	113, 327, 897
PspPI	GGNCC	2 cut(s)	111, 896
RsaI	GTAC	2 cut(s)	338, 1187
RsaNI	GTAC	2 cut(s)	337, 1186
SaqAI	TTAA	9 cut(s)	18, 89, 188, 363, 453, 543, 650, 963, 1166
Sau3AI	GATC	3 cut(s)	577, 586, 997
Sau96I	GGNCC	2 cut(s)	111, 896
SchI	GAGTC	1 cut(s)	140
ScrFI	CCNGG	2 cut(s)	268, 733
SfaNI	GCATC	4 cut(s)	418, 569, 688, 937
Sfr274I	CTCGAG	1 cut(s)	59
SinI	GGWCC	2 cut(s)	111, 896
SlaI	CTCGAG	1 cut(s)	59
SmlI	CTYRAG	4 cut(s)	59, 116, 357, 886
SmoI	CTYRAG	4 cut(s)	59, 116, 357, 886
SseBI	AGGCCT	2 cut(s)	831, 1055
SsiI	CCGC	3 cut(s)	431, 854, 904
SspMI	CTAG	5 cut(s)	273, 788, 822, 873, 1195
StuI	AGGCCT	2 cut(s)	831, 1055
StyD4I	CCNGG	2 cut(s)	266, 731
StyI	CCWWGG	1 cut(s)	899
TaaI	ACNGT	4 cut(s)	68, 142, 317, 796
TaiI	ACGT	1 cut(s)	522
TaqI	TCGA	4 cut(s)	60, 250, 492, 1072
TaqII	GACCGA	1 cut(s)	164
TfiI	GAWTC	4 cut(s)	508, 986, 1137, 1178
Tru1I	TTAA	9 cut(s)	18, 89, 188, 363, 453, 543, 650, 963, 1166
Tru9I	TTAA	9 cut(s)	18, 89, 188, 363, 453, 543, 650, 963, 1166
TscAI	CASTG	2 cut(s)	145, 1070
TspDTI	ATGAA	5 cut(s)	309, 627, 693, 1001, 1150
TspGWI	ACGGA	1 cut(s)	60
TspRI	CASTG	2 cut(s)	145, 1070
VpaK11BI	GGWCC	2 cut(s)	111, 896
XagI	CCTNNNNNAGG	1 cut(s)	271
XapI	RAATTY	2 cut(s)	213, 419
XbaI	TCTAGA	2 cut(s)	787, 872
XhoI	CTCGAG	1 cut(s)	59
XspI	CTAG	5 cut(s)	273, 788, 822, 873, 1195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.