Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0009626

Physical Location & Seq

Genomic Coordinates Reverse (-)

2945709 .. 2947387

Gene Structure 1679 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1037100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGACAATTCACGCGGGAATCCTCTGCTTCAAAACCCAAGTTCAGTTTCCCTGTCGGCTTCTCCCCCTGACCTGGAGGAAATGTGCCGTCACATGCTTGCAGAACAGAGATTACAGTTCCTCGGCTCCGGTTAGGTACATTCCGAAAAATTCTTCGAAAGTTAAGAAATTGGAAAGTTCTCCACAGACAAAGGGTTCTGAAGAGAAAGAGTTCCGTGAATTTGCGGAGGTTAAACAGAGTGGAAGAAGGGTGCGTAAAAGCCTGGACTTCAACGAGAAGCCTCAAAATCAGAATCAAAATCGATATAGTAACTCATCGTTTAGTGATGCTCAGAAAGCTCCAGATTTGAAGGATCAGACGAATCATCTTTCGGGTGCTGTAGGCTATGAACTCATGGAAGAGCCTGAAGAGGTTTTTGAAGAGTTAAAGGGTTCTAAAGAAAAAGAGTTTCCTGAATTTTCGGATGCGAGCGCACTGAAGCGTGAGGTTAAACATTGGGGAAGAGGTGTGCATAAAAATAGGGTACTGAATGAGAAGCCTCAGGATCAGAATCAACAGAGTTCTAAAAAAAAGAATCGGAATCAAATTCAATATAGTAACTCATTGTTTAATGATGTCCAGAAAGAATCTCCAGGGCTGGAAGATCGGAATGATCGTATTTTAGGGGCAATAGGCTATGAACTCATTGAAGAGCCTGAGGAGGTTTTCGAAGAGTTAAATATCCTTGAAGAGAAAAAGTGTCCTGAGCAAGGTGTAGTGCAAGGTATAAAGCATGATGCTGAGCAAGTGGCAATAAAATTACTTGCAACCAGGTTAAAAATTTCCAAAACTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RecX

Protein Analysis

279

Amino Acids

31.93

Weight (kDa)

8.44

Isoelectric Point (pI)

45.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009626)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13226
fragaria_vesca	FvH4_3g42180 FvH4_3g42180 FvH4_3g42180 FvH4_3g42180
malus_domestica	MD03G1037000.v1.1 MD03G1037100.v1.1
prunus_persica	Prupe.6G029100_v2.0.a1 Prupe.6G029900_v2.0.a1 Prupe.6G082900_v2.0.a1 Prupe.6G083000_v2.0.a1
pyrus_communis	pycom03g02850
rosa_chinensis	RchiOBHm_Chr5g0075451
rosa_laevigata	RLG00000036564
rosa_multiflora	Rmu_sc0000770.1_g000005
rosa_roxburghii	Rroxscaffold_1G00006050
rosa_rugosa	Rorug05G0439700
rosa_samantha	Rh5AG496700 Rh5BG518000 Rh5CG541500 Rh5DG531300
rosa_wichuraiana	Rw5G046070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	14
AciI	CCGC	2 cut(s)	14, 224
AclWI	GGATC	2 cut(s)	360, 552
AcsI	RAATTY	5 cut(s)	148, 218, 455, 585, 819
AcuI	CTGAAG	3 cut(s)	219, 426, 497
AfaI	GTAC	2 cut(s)	137, 525
AfiI	CCNNNNNNNGG	2 cut(s)	72, 749
AgsI	TTSAA	7 cut(s)	31, 271, 349, 419, 590, 689, 728
AjnI	CCWGG	4 cut(s)	71, 261, 631, 809
AjuI	GAANNNNNNNTTGG	2 cut(s)	30, 62
AluBI	AGCT	1 cut(s)	338
AluI	AGCT	1 cut(s)	338
AlwI	GGATC	2 cut(s)	360, 552
ApoI	RAATTY	5 cut(s)	148, 218, 455, 585, 819
Asp700I	GAANNNNTTC	1 cut(s)	209
AspLEI	GCGC	1 cut(s)	473
AsuII	TTCGAA	2 cut(s)	155, 708
AxyI	CCTNAGG	2 cut(s)	540, 696
BceAI	ACGGC	1 cut(s)	71
BciT130I	CCWGG	4 cut(s)	73, 263, 633, 811
BfmI	CTRYAG	1 cut(s)	378
BlpI	GCTNAGC	1 cut(s)	780
Bme1390I	CCNGG	4 cut(s)	73, 263, 633, 811
BmiI	GGNNCC	1 cut(s)	126
BmrFI	CCNGG	4 cut(s)	73, 263, 633, 811
BmsI	GCATC	3 cut(s)	316, 454, 766
BpmI	CTGGAG	3 cut(s)	94, 324, 615
Bpu10I	CCTNAGC	1 cut(s)	744
Bpu1102I	GCTNAGC	1 cut(s)	780
Bpu14I	TTCGAA	2 cut(s)	155, 708
Bsa29I	ATCGAT	1 cut(s)	301
BsaBI	GATNNNNATC	1 cut(s)	549
BsaJI	CCNNGG	2 cut(s)	120, 632
BsaWI	WCCGGW	1 cut(s)	127
BsaXI	ACNNNNNCTCC	2 cut(s)	67, 97
Bsc4I	CCNNNNNNNGG	2 cut(s)	72, 749
Bse21I	CCTNAGG	2 cut(s)	540, 696
Bse8I	GATNNNNATC	1 cut(s)	549
BseBI	CCWGG	4 cut(s)	73, 263, 633, 811
BseCI	ATCGAT	1 cut(s)	301
BseDI	CCNNGG	2 cut(s)	120, 632
BseGI	GGATG	1 cut(s)	469
BseJI	GATNNNNATC	1 cut(s)	549
BseLI	CCNNNNNNNGG	2 cut(s)	72, 749
BseMII	CTCAG	5 cut(s)	344, 554, 687, 735, 771
BseRI	GAGGAG	1 cut(s)	713
Bsh1236I	CGCG	1 cut(s)	14
BshVI	ATCGAT	1 cut(s)	301
BsiSI	CCGG	1 cut(s)	128
BslI	CCNNNNNNNGG	2 cut(s)	72, 749
Bsp119I	TTCGAA	2 cut(s)	155, 708
Bsp143I	GATC	4 cut(s)	352, 544, 643, 652
Bsp1720I	GCTNAGC	1 cut(s)	780
BspACI	CCGC	2 cut(s)	14, 224
BspCNI	CTCAG	5 cut(s)	343, 553, 688, 736, 772
BspDI	ATCGAT	1 cut(s)	301
BspFNI	CGCG	1 cut(s)	14
BspLI	GGNNCC	1 cut(s)	126
BspPI	GGATC	2 cut(s)	360, 552
BspQI	GCTCTTC	2 cut(s)	393, 684
BspT104I	TTCGAA	2 cut(s)	155, 708
BssECI	CCNNGG	2 cut(s)	120, 632
BssMI	GATC	4 cut(s)	352, 544, 643, 652
Bst2UI	CCWGG	4 cut(s)	73, 263, 633, 811
Bst4CI	ACNGT	1 cut(s)	116
Bst6I	CTCTTC	8 cut(s)	195, 393, 402, 414, 496, 684, 705, 723
BstBI	TTCGAA	2 cut(s)	155, 708
BstC8I	GCNNGC	2 cut(s)	98, 469
BstDEI	CTNAG	5 cut(s)	330, 540, 696, 744, 780
BstENI	CCTNNNNNAGG	1 cut(s)	747
BstF5I	GGATG	1 cut(s)	469
BstFNI	CGCG	1 cut(s)	14
BstHHI	GCGC	1 cut(s)	473
BstKTI	GATC	4 cut(s)	355, 547, 646, 655
BstMBI	GATC	4 cut(s)	352, 544, 643, 652
BstMWI	GCNNNNNNNGC	1 cut(s)	335
BstNI	CCWGG	4 cut(s)	73, 263, 633, 811
BstNSI	RCATGY	1 cut(s)	96
BstSCI	CCNGG	4 cut(s)	71, 261, 631, 809
BstSFI	CTRYAG	1 cut(s)	378
BstUI	CGCG	1 cut(s)	14
Bsu15I	ATCGAT	1 cut(s)	301
Bsu36I	CCTNAGG	2 cut(s)	540, 696
BsuTUI	ATCGAT	1 cut(s)	301
BtsCI	GGATG	1 cut(s)	469
BtsIMutI	CAGTG	1 cut(s)	473
Cac8I	GCNNGC	2 cut(s)	98, 469
CfoI	GCGC	1 cut(s)	473
ClaI	ATCGAT	1 cut(s)	301
CsiI	ACCWGGT	1 cut(s)	809
Csp6I	GTAC	2 cut(s)	136, 524
CviAII	CATG	3 cut(s)	93, 394, 773
CviQI	GTAC	2 cut(s)	136, 524
DdeI	CTNAG	5 cut(s)	330, 540, 696, 744, 780
DpnI	GATC	4 cut(s)	354, 546, 645, 654
DpnII	GATC	4 cut(s)	352, 544, 643, 652
Eam1104I	CTCTTC	8 cut(s)	195, 393, 402, 414, 496, 684, 705, 723
EarI	CTCTTC	8 cut(s)	195, 393, 402, 414, 496, 684, 705, 723
Eco57I	CTGAAG	3 cut(s)	219, 426, 497
Eco81I	CCTNAGG	2 cut(s)	540, 696
EcoNI	CCTNNNNNAGG	1 cut(s)	747
EcoRII	CCWGG	4 cut(s)	71, 261, 631, 809
FaeI	CATG	3 cut(s)	96, 397, 776
FatI	CATG	3 cut(s)	92, 393, 772
FauI	CCCGC	1 cut(s)	7
FokI	GGATG	1 cut(s)	476
GlaI	GCGC	1 cut(s)	472
GsuI	CTGGAG	3 cut(s)	94, 324, 615
HapII	CCGG	1 cut(s)	128
HhaI	GCGC	1 cut(s)	473
Hin1II	CATG	3 cut(s)	96, 397, 776
Hin6I	GCGC	1 cut(s)	471
HinP1I	GCGC	1 cut(s)	471
HinfI	GANTC	7 cut(s)	18, 292, 361, 550, 574, 580, 626
HpaII	CCGG	1 cut(s)	128
Hpy188I	TCNGA	9 cut(s)	144, 199, 291, 333, 357, 463, 549, 579, 648
Hpy188III	TCNNGA	5 cut(s)	341, 452, 542, 619, 743
HpyAV	CCTTC	2 cut(s)	240, 343
HpyCH4III	ACNGT	1 cut(s)	116
HpyCH4V	TGCA	4 cut(s)	100, 511, 760, 806
HpyF10VI	GCNNNNNNNGC	1 cut(s)	335
HpyF3I	CTNAG	5 cut(s)	330, 540, 696, 744, 780
Hsp92II	CATG	3 cut(s)	96, 397, 776
HspAI	GCGC	1 cut(s)	471
Kzo9I	GATC	4 cut(s)	352, 544, 643, 652
LguI	GCTCTTC	2 cut(s)	393, 684
LmnI	GCTCC	2 cut(s)	130, 343
LweI	GCATC	3 cut(s)	316, 454, 766
MabI	ACCWGGT	1 cut(s)	809
MaeIII	GTNAC	3 cut(s)	88, 308, 596
MalI	GATC	4 cut(s)	354, 546, 645, 654
MboI	GATC	4 cut(s)	352, 544, 643, 652
MluCI	AATT	8 cut(s)	6, 148, 167, 218, 455, 585, 797, 819
MroXI	GAANNNNTTC	1 cut(s)	209
MseI	TTAA	7 cut(s)	162, 231, 425, 489, 609, 716, 815
MspI	CCGG	1 cut(s)	128
MspR9I	CCNGG	4 cut(s)	73, 263, 633, 811
MvaI	CCWGG	4 cut(s)	73, 263, 633, 811
MvnI	CGCG	1 cut(s)	14
MwoI	GCNNNNNNNGC	1 cut(s)	335
NdeII	GATC	4 cut(s)	352, 544, 643, 652
NlaIII	CATG	3 cut(s)	96, 397, 776
NlaIV	GGNNCC	1 cut(s)	126
NmeAIII	GCCGAG	1 cut(s)	101
NmuCI	GTSAC	1 cut(s)	88
NspI	RCATGY	1 cut(s)	96
NspV	TTCGAA	2 cut(s)	155, 708
PciSI	GCTCTTC	2 cut(s)	393, 684
PcsI	WCGNNNNNNNCGW	1 cut(s)	652
PdmI	GAANNNNTTC	1 cut(s)	209
PfeI	GAWTC	7 cut(s)	18, 292, 361, 550, 574, 580, 626
Psp6I	CCWGG	4 cut(s)	71, 261, 631, 809
PspGI	CCWGG	4 cut(s)	71, 261, 631, 809
PspN4I	GGNNCC	1 cut(s)	126
PsrI	GAACNNNNNNTAC	2 cut(s)	95, 127
RsaI	GTAC	2 cut(s)	137, 525
RsaNI	GTAC	2 cut(s)	136, 524
SapI	GCTCTTC	2 cut(s)	393, 684
SaqAI	TTAA	7 cut(s)	162, 231, 425, 489, 609, 716, 815
Sau3AI	GATC	4 cut(s)	352, 544, 643, 652
ScrFI	CCNGG	4 cut(s)	73, 263, 633, 811
SexAI	ACCWGGT	1 cut(s)	809
SfaNI	GCATC	3 cut(s)	316, 454, 766
SfcI	CTRYAG	1 cut(s)	378
SfuI	TTCGAA	2 cut(s)	155, 708
Sse9I	AATT	8 cut(s)	6, 148, 167, 218, 455, 585, 797, 819
SsiI	CCGC	2 cut(s)	14, 224
StyD4I	CCNGG	4 cut(s)	71, 261, 631, 809
TaaI	ACNGT	1 cut(s)	116
TaqI	TCGA	3 cut(s)	155, 301, 708
TasI	AATT	8 cut(s)	6, 148, 167, 218, 455, 585, 797, 819
TfiI	GAWTC	7 cut(s)	18, 292, 361, 550, 574, 580, 626
Tru1I	TTAA	7 cut(s)	162, 231, 425, 489, 609, 716, 815
Tru9I	TTAA	7 cut(s)	162, 231, 425, 489, 609, 716, 815
TscAI	CASTG	1 cut(s)	480
TseFI	GTSAC	1 cut(s)	88
Tsp45I	GTSAC	1 cut(s)	88
TspDTI	ATGAA	3 cut(s)	402, 693, 822
TspGWI	ACGGA	1 cut(s)	203
TspRI	CASTG	1 cut(s)	480
XagI	CCTNNNNNAGG	1 cut(s)	747
XapI	RAATTY	5 cut(s)	148, 218, 455, 585, 819
XceI	RCATGY	1 cut(s)	96
XmnI	GAANNNNTTC	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.