Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010334

Physical Location & Seq

Genomic Coordinates Reverse (-)

4335475 .. 4338016

Gene Structure 2542 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G13350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGTCGACCGATATTTCACCACCCTACTCTCAAACTCACGTGGAGCCCGTTAATGGTTATCCTTCTGACAACAAGAGATGCGACGATTCCTCTGTTCCTGCCAAATATGATGATCTTGTCCGTAACTCTGCTCTCTTCTGGGAAAAGCTCCGAGCTTTCCTCGGATTAACCAGCAAGACTTTGAAGGTTCCTACTGTGGGAGGAAACACTCTTGATCTGCATCGGCTTTTCATCGAGGTTACGTCTCGAGGTGGTATCGAAAGGGTGGTGAAGGATCGGAAATGGAAAGAAGTGATTGGTGCATTCAGTTTTCCGACAACGATAACAAGTGCATCGTTTGTCTTGAGGAAGTATTATCTCAAGTTTCTTTTTCAGCTGGAACATGTGTATTACCTTGAAAAACCGGTGTCTTCACTCCAATCAACAGATGAAGCATTGAAGAGCCTTGCCAATGAATCTCCAAACCCTGAGGAAGGTATTGATGAACCACAAGTTGGGTATGAGGTTCAAGGATTCATTGATGGGAAGTTTGATAGCGGCTATCTGGTGACGATGAAATTGGGTTCTCAAGAGCTGAAAGGTGTCCTTTACCACATTCCTCAAACGCCAAGTCAGTCTCAACAAACCATGGAAACACCTTCAGCCATTGTACAATCATCACAACGCCGGCATAGGAAGAAATCAAAGTTGGCTGTAGTCGATACTCAAAAACCCAAATGCCACAGGAGTGGCTACAACTTCTTTTTTGCTGAGCAGTACGCGAGGCTTAAACCTGAGTACCATGGACAAGAACGATCCATCACTAAGAAAATAGGACACATGTGGAGCAATCTCACTGAATCTGAGAAACAGGTTTATCAAGACAAAGGAGTTAAGGATGTGGAGAGATACAGAATTGAGATGTTGGAATATAAGTCTTCACATGAATCAGGAGCTACTGCTTCTACAGTGGCTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ARID HMG_box

Protein Analysis

319

Amino Acids

36.3

Weight (kDa)

8.75

Isoelectric Point (pI)

49.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARID	PF01388	43 - 125	1.8e-18	ARID/BRIGHT DNA binding domain
HMG_box_2	PF09011	236 - 304	2e-08	HMG-box domain
HMG_box	PF00505	239 - 305	1.3e-10	HMG (high mobility group) box

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13350
fragaria_vesca	FvH4_3g41610
malus_domestica	MD03G1042900.v1.1 MD11G1045900.v1.1 MD13G1138800.v1.1
prunus_persica	Prupe.6G035300_v2.0.a1 Prupe.6G035300_v2.0.a1
pyrus_communis	pycom02g14660 pycom03g03310 pycom11g03720
rosa_chinensis	RchiOBHm_Chr5g0074651
rosa_laevigata	RLG00000036494
rosa_multiflora	Rmu_sc0000909.1_g000033 Rmu_sc0008028.1_g000006
rosa_roxburghii	Rroxscaffold_1G00006890
rosa_rugosa	Rorug05G0433500
rosa_samantha	Rh5AG490500 Rh5BG511600 Rh5CG535400 Rh5DG524000
rosa_wichuraiana	Rw5G045430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	494
AccI	GTMKAC	1 cut(s)	5
AccII	CGCG	1 cut(s)	761
AciI	CCGC	1 cut(s)	537
AclWI	GGATC	2 cut(s)	282, 789
AcuI	CTGAAG	1 cut(s)	624
AcvI	CACGTG	1 cut(s)	40
AfaI	GTAC	3 cut(s)	651, 758, 779
AfiI	CCNNNNNNNGG	4 cut(s)	53, 197, 473, 494
AflIII	ACRYGT	2 cut(s)	382, 819
AgeI	ACCGGT	1 cut(s)	403
AgsI	TTSAA	4 cut(s)	184, 398, 439, 509
AjuI	GAANNNNNNNTTGG	4 cut(s)	477, 509, 671, 703
AleI	CACNNNNGTG	1 cut(s)	726
AluBI	AGCT	5 cut(s)	148, 155, 376, 574, 935
AluI	AGCT	5 cut(s)	148, 155, 376, 574, 935
Alw26I	GTCTC	2 cut(s)	249, 621
AlwI	GGATC	2 cut(s)	282, 789
Ama87I	CYCGRG	1 cut(s)	246
ArsI	GACNNNNNNTTYG	2 cut(s)	595, 627
AsiGI	ACCGGT	1 cut(s)	403
AsuHPI	GGTGA	3 cut(s)	9, 280, 559
AvaI	CYCGRG	1 cut(s)	246
AxyI	CCTNAGG	1 cut(s)	468
BaeI	ACNNNNGTAYC	2 cut(s)	761, 794
BanII	GRGCYC	1 cut(s)	48
BbrPI	CACGTG	1 cut(s)	40
BbsI	GAAGAC	2 cut(s)	402, 909
BccI	CCATC	2 cut(s)	515, 806
BcoDI	GTCTC	2 cut(s)	249, 621
BfmI	CTRYAG	2 cut(s)	693, 945
BisI	GCNGC	1 cut(s)	538
BlpI	GCTNAGC	1 cut(s)	750
BlsI	GCNGC	1 cut(s)	539
BmeT110I	CYCGRG	1 cut(s)	246
BmiI	GGNNCC	2 cut(s)	45, 189
BmsI	GCATC	3 cut(s)	68, 229, 341
BpiI	GAAGAC	2 cut(s)	402, 909
BplI	GAGNNNNNCTC	2 cut(s)	144, 176
Bpu1102I	GCTNAGC	1 cut(s)	750
BpuEI	CTTGAG	3 cut(s)	344, 364, 552
BsaAI	YACGTR	1 cut(s)	40
BsaBI	GATNNNNATC	1 cut(s)	219
BsaJI	CCNNGG	3 cut(s)	160, 627, 781
BsaWI	WCCGGW	1 cut(s)	403
Bsc4I	CCNNNNNNNGG	4 cut(s)	53, 197, 473, 494
Bse118I	RCCGGY	2 cut(s)	403, 666
Bse21I	CCTNAGG	1 cut(s)	468
Bse8I	GATNNNNATC	1 cut(s)	219
BseDI	CCNNGG	3 cut(s)	160, 627, 781
BseGI	GGATG	1 cut(s)	883
BseJI	GATNNNNATC	1 cut(s)	219
BseLI	CCNNNNNNNGG	4 cut(s)	53, 197, 473, 494
BseMII	CTCAG	4 cut(s)	459, 741, 765, 834
Bsh1236I	CGCG	1 cut(s)	761
Bsh1285I	CGRYCG	1 cut(s)	9
BshTI	ACCGGT	1 cut(s)	403
BsiEI	CGRYCG	1 cut(s)	9
BsiHKCI	CYCGRG	1 cut(s)	246
BsiSI	CCGG	2 cut(s)	404, 667
BslI	CCNNNNNNNGG	4 cut(s)	53, 197, 473, 494
BsmAI	GTCTC	2 cut(s)	249, 621
BsmBI	CGTCTC	1 cut(s)	249
BsmI	GAATGC	1 cut(s)	302
BsoBI	CYCGRG	1 cut(s)	246
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp1407I	TGTACA	1 cut(s)	649
Bsp143I	GATC	4 cut(s)	112, 214, 274, 794
Bsp1720I	GCTNAGC	1 cut(s)	750
Bsp19I	CCATGG	2 cut(s)	627, 781
BspACI	CCGC	1 cut(s)	537
BspCNI	CTCAG	4 cut(s)	460, 742, 766, 835
BspFNI	CGCG	1 cut(s)	761
BspLI	GGNNCC	2 cut(s)	45, 189
BspPI	GGATC	2 cut(s)	282, 789
BspQI	GCTCTTC	1 cut(s)	434
BsrFI	RCCGGY	2 cut(s)	403, 666
BsrGI	TGTACA	1 cut(s)	649
BssAI	RCCGGY	2 cut(s)	403, 666
BssECI	CCNNGG	3 cut(s)	160, 627, 781
BssMI	GATC	4 cut(s)	112, 214, 274, 794
BssT1I	CCWWGG	2 cut(s)	627, 781
Bst4CI	ACNGT	2 cut(s)	196, 949
Bst6I	CTCTTC	2 cut(s)	140, 434
BstAUI	TGTACA	1 cut(s)	649
BstBAI	YACGTR	1 cut(s)	40
BstC8I	GCNNGC	1 cut(s)	668
BstDEI	CTNAG	6 cut(s)	468, 750, 774, 804, 843, 954
BstDSI	CCRYGG	2 cut(s)	627, 781
BstENI	CCTNNNNNAGG	1 cut(s)	471
BstF5I	GGATG	1 cut(s)	883
BstFNI	CGCG	1 cut(s)	761
BstKTI	GATC	4 cut(s)	115, 217, 277, 797
BstMAI	GTCTC	2 cut(s)	249, 621
BstMBI	GATC	4 cut(s)	112, 214, 274, 794
BstMCI	CGRYCG	1 cut(s)	9
BstNSI	RCATGY	2 cut(s)	386, 823
BstSFI	CTRYAG	2 cut(s)	693, 945
BstUI	CGCG	1 cut(s)	761
BstV2I	GAAGAC	2 cut(s)	402, 909
BstXI	CCANNNNNNTGG	1 cut(s)	728
Bsu36I	CCTNAGG	1 cut(s)	468
BtgI	CCRYGG	2 cut(s)	627, 781
BtsCI	GGATG	1 cut(s)	883
BtsIMutI	CAGTG	2 cut(s)	834, 954
Cac8I	GCNNGC	1 cut(s)	668
Cfr10I	RCCGGY	2 cut(s)	403, 666
Csp6I	GTAC	3 cut(s)	650, 757, 778
CspAI	ACCGGT	1 cut(s)	403
CviAII	CATG	5 cut(s)	383, 628, 782, 820, 923
CviQI	GTAC	3 cut(s)	650, 757, 778
DdeI	CTNAG	6 cut(s)	468, 750, 774, 804, 843, 954
DpnI	GATC	4 cut(s)	114, 216, 276, 796
DpnII	GATC	4 cut(s)	112, 214, 274, 794
Eam1104I	CTCTTC	2 cut(s)	140, 434
EarI	CTCTTC	2 cut(s)	140, 434
Eco130I	CCWWGG	2 cut(s)	627, 781
Eco24I	GRGCYC	1 cut(s)	48
Eco57I	CTGAAG	1 cut(s)	624
Eco72I	CACGTG	1 cut(s)	40
Eco81I	CCTNAGG	1 cut(s)	468
Eco88I	CYCGRG	1 cut(s)	246
EcoNI	CCTNNNNNAGG	1 cut(s)	471
EcoT14I	CCWWGG	2 cut(s)	627, 781
EcoT38I	GRGCYC	1 cut(s)	48
ErhI	CCWWGG	2 cut(s)	627, 781
Esp3I	CGTCTC	1 cut(s)	249
FaeI	CATG	5 cut(s)	386, 631, 785, 823, 926
FaiI	YATR	9 cut(s)	108, 384, 501, 629, 672, 783, 821, 912, 924
FalI	AAGNNNNNCTT	2 cut(s)	570, 602
FatI	CATG	5 cut(s)	382, 627, 781, 819, 922
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	1 cut(s)	538
FokI	GGATG	1 cut(s)	890
FriOI	GRGCYC	1 cut(s)	48
Fsp4HI	GCNGC	1 cut(s)	538
GluI	GCNGC	1 cut(s)	538
HapII	CCGG	2 cut(s)	404, 667
Hin1II	CATG	5 cut(s)	386, 631, 785, 823, 926
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	5 cut(s)	86, 455, 513, 839, 926
HpaII	CCGG	2 cut(s)	404, 667
HphI	GGTGA	3 cut(s)	9, 280, 559
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	6 cut(s)	67, 152, 164, 279, 315, 844
Hpy188III	TCNNGA	6 cut(s)	212, 246, 343, 569, 860, 930
Hpy8I	GTNNAC	1 cut(s)	6
Hpy99I	CGWCG	1 cut(s)	86
HpyAV	CCTTC	5 cut(s)	72, 178, 265, 467, 648
HpyCH4III	ACNGT	2 cut(s)	196, 949
HpyCH4IV	ACGT	2 cut(s)	39, 242
HpyCH4V	TGCA	3 cut(s)	220, 302, 332
HpyF3I	CTNAG	6 cut(s)	468, 750, 774, 804, 843, 954
HpySE526I	ACGT	2 cut(s)	39, 242
Hsp92II	CATG	5 cut(s)	386, 631, 785, 823, 926
KroI	GCCGGC	1 cut(s)	666
KroNI	GCCGGC	1 cut(s)	668
Kzo9I	GATC	4 cut(s)	112, 214, 274, 794
LguI	GCTCTTC	1 cut(s)	434
LmnI	GCTCC	4 cut(s)	43, 153, 825, 932
LweI	GCATC	3 cut(s)	68, 229, 341
MaeII	ACGT	2 cut(s)	39, 242
MaeIII	GTNAC	3 cut(s)	122, 238, 547
MalI	GATC	4 cut(s)	114, 216, 276, 796
MboI	GATC	4 cut(s)	112, 214, 274, 794
MboII	GAAGA	5 cut(s)	127, 402, 451, 688, 909
MhlI	GDGCHC	1 cut(s)	48
MluCI	AATT	2 cut(s)	557, 894
MmeI	TCCRAC	2 cut(s)	338, 885
MroNI	GCCGGC	1 cut(s)	666
MseI	TTAA	4 cut(s)	51, 167, 768, 873
MslI	CAYNNNNRTG	1 cut(s)	726
MspA1I	CMGCKG	1 cut(s)	376
MspI	CCGG	2 cut(s)	404, 667
Mva1269I	GAATGC	1 cut(s)	302
MvnI	CGCG	1 cut(s)	761
NaeI	GCCGGC	1 cut(s)	668
NcoI	CCATGG	2 cut(s)	627, 781
NdeII	GATC	4 cut(s)	112, 214, 274, 794
NgoMIV	GCCGGC	1 cut(s)	666
NlaIII	CATG	5 cut(s)	386, 631, 785, 823, 926
NlaIV	GGNNCC	2 cut(s)	45, 189
NmuCI	GTSAC	1 cut(s)	547
NspI	RCATGY	2 cut(s)	386, 823
OliI	CACNNNNGTG	1 cut(s)	726
PaeR7I	CTCGAG	1 cut(s)	246
PciI	ACATGT	2 cut(s)	382, 819
PciSI	GCTCTTC	1 cut(s)	434
PcsI	WCGNNNNNNNCGW	1 cut(s)	45
PctI	GAATGC	1 cut(s)	302
PdiI	GCCGGC	1 cut(s)	668
PfeI	GAWTC	5 cut(s)	86, 455, 513, 839, 926
PflMI	CCANNNNNTGG	1 cut(s)	494
PinAI	ACCGGT	1 cut(s)	403
PkrI	GCNGC	1 cut(s)	539
PmaCI	CACGTG	1 cut(s)	40
PmlI	CACGTG	1 cut(s)	40
Ppu21I	YACGTR	1 cut(s)	40
PscI	ACATGT	2 cut(s)	382, 819
PspCI	CACGTG	1 cut(s)	40
PspN4I	GGNNCC	2 cut(s)	45, 189
PvuII	CAGCTG	1 cut(s)	376
RsaI	GTAC	3 cut(s)	651, 758, 779
RsaNI	GTAC	3 cut(s)	650, 757, 778
RseI	CAYNNNNRTG	1 cut(s)	726
SalI	GTCGAC	1 cut(s)	4
SapI	GCTCTTC	1 cut(s)	434
SaqAI	TTAA	4 cut(s)	51, 167, 768, 873
SatI	GCNGC	1 cut(s)	538
Sau3AI	GATC	4 cut(s)	112, 214, 274, 794
SduI	GDGCHC	1 cut(s)	48
SfaNI	GCATC	3 cut(s)	68, 229, 341
SfcI	CTRYAG	2 cut(s)	693, 945
Sfr274I	CTCGAG	1 cut(s)	246
SlaI	CTCGAG	1 cut(s)	246
SmiMI	CAYNNNNRTG	1 cut(s)	726
SmlI	CTYRAG	4 cut(s)	246, 343, 359, 567
SmoI	CTYRAG	4 cut(s)	246, 343, 359, 567
Sse9I	AATT	2 cut(s)	557, 894
SsiI	CCGC	1 cut(s)	537
StyI	CCWWGG	2 cut(s)	627, 781
TaaI	ACNGT	2 cut(s)	196, 949
TaiI	ACGT	2 cut(s)	42, 245
TaqI	TCGA	5 cut(s)	5, 234, 247, 258, 699
TaqII	GACCGA	1 cut(s)	23
TasI	AATT	2 cut(s)	557, 894
TatI	WGTACW	1 cut(s)	649
TauI	GCSGC	1 cut(s)	540
TfiI	GAWTC	5 cut(s)	86, 455, 513, 839, 926
Tru1I	TTAA	4 cut(s)	51, 167, 768, 873
Tru9I	TTAA	4 cut(s)	51, 167, 768, 873
TscAI	CASTG	2 cut(s)	841, 954
TseFI	GTSAC	1 cut(s)	547
Tsp45I	GTSAC	1 cut(s)	547
TspDTI	ATGAA	7 cut(s)	220, 444, 468, 498, 505, 569, 939
TspGWI	ACGGA	1 cut(s)	110
TspRI	CASTG	2 cut(s)	841, 954
Van91I	CCANNNNNTGG	1 cut(s)	494
XagI	CCTNNNNNAGG	1 cut(s)	471
XceI	RCATGY	2 cut(s)	386, 823
XhoI	CTCGAG	1 cut(s)	246
XmiI	GTMKAC	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.