Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0010334

Physical Location & Seq

Genomic Coordinates Forward (+)

2616155 .. 2619934

Gene Structure 3780 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g03310.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGTCTGAGGTCCCAACACAAAAAATTACAGAAAAGGAGAAGCCTTCTTCTTCCTCAGTCACTTCTGCTCACCAGCAACGACTCCTCTCTCTCCCCGCCAATGGGTCTTCTCTCTCATCCCCCGCCTCCGCCCCAAAGGCTTATCCTTCACCCACAGCAACGTATGAGGAAGTCGTTCAAAGCTCCGACCTTTTCTTGGAAAAGCTGAAGGAGTTTCACGATTCGTTCAGAACCAAATTCATGATTCCTACTGTAGGAGGAAAAACTCTGGATCTACATCTCCTTTTTGTAGAAGTCACATGTCGTGACGGGCTTGAAAAGGTGATTAGAGATCGCAAATGGAAGGAAGTGATTGCGGCCTTCAATTTCCCAACAACAATTACCAGTGCTTCGTTTGTCTTACGGAAGTACTACTTGTCTTTGCTGTATCACTTTGAGCAGGCCTATTATTTCCACAAAGAAGTTTATAGCATACCAGTGCTTGAGCCTCTAAGCAAGAACCTTTTCAATGGGTCAGCCACCATGGAGGAAGGTGCAAGTACAAACCAATTTCCAGGTCAGGAAAGCACAGAAGTGCAGCTTGGTTGTTCAATCATGGGAACCATTGATGGGAAATTTGACAGTGGATATCTGGCTACTGTCAACTTGGGTTCTGATGAACTGAAAGGTGTCTTGTATCATGCTCCTACATCTACATATGTTTCTCAGAGTTTTTCGGACATGCCTACTCGACAGAACCGAAAGAGATCCAGGTTGGCATTACGTGATCCCTTTCGGCCCAAGTCAAACAGGAGTGGTTACAATTTCTTCTTCGCTGAGAATTATGCCAGATTAAAACCTCTGTACTATGGGCAAGAGAGAGCCATCAGCAAAAAAATTGGGTATCTATGGAACAATCTCACAGAGGCCGAGAAACAGGTTTATCAGGATAAAGGGATGAAAGACAAGGAGAGATACAGGACCGAACTGCTGGAATATAAATCTTCCTACAATCCTACACAGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ARID HMG_box

Protein Analysis

336

Amino Acids

38.17

Weight (kDa)

8.98

Isoelectric Point (pI)

40.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13350
fragaria_vesca	FvH4_3g41610
malus_domestica	MD03G1042900.v1.1 MD11G1045900.v1.1 MD13G1138800.v1.1
prunus_persica	Prupe.6G035300_v2.0.a1 Prupe.6G035300_v2.0.a1
pyrus_communis	pycom02g14660 pycom03g03310 pycom11g03720
rosa_chinensis	RchiOBHm_Chr5g0074651
rosa_laevigata	RLG00000036494
rosa_multiflora	Rmu_sc0000909.1_g000033 Rmu_sc0008028.1_g000006
rosa_roxburghii	Rroxscaffold_1G00006890
rosa_rugosa	Rorug05G0433500
rosa_samantha	Rh5AG490500 Rh5BG511600 Rh5CG535400 Rh5DG524000
rosa_wichuraiana	Rw5G045430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	96, 123, 129, 356
AclWI	GGATC	3 cut(s)	279, 741, 761
AcsI	RAATTY	2 cut(s)	236, 614
AcuI	CTGAAG	1 cut(s)	227
AfaI	GTAC	3 cut(s)	410, 541, 845
AfiI	CCNNNNNNNGG	5 cut(s)	101, 102, 196, 254, 609
AflIII	ACRYGT	1 cut(s)	299
AgsI	TTSAA	5 cut(s)	179, 317, 364, 508, 591
AjnI	CCWGG	2 cut(s)	553, 749
AjuI	GAANNNNNNNTTGG	2 cut(s)	564, 596
AleI	CACNNNNGTG	1 cut(s)	572
AluBI	AGCT	3 cut(s)	183, 205, 580
AluI	AGCT	3 cut(s)	183, 205, 580
AlwI	GGATC	3 cut(s)	279, 741, 761
AoxI	GGCC	4 cut(s)	357, 441, 776, 906
ApeKI	GCWGC	1 cut(s)	577
ApoI	RAATTY	2 cut(s)	236, 614
Asp700I	GAANNNNTTC	2 cut(s)	174, 503
AspS9I	GGNCC	3 cut(s)	10, 777, 960
AsuHPI	GGTGA	3 cut(s)	62, 141, 334
AvaII	GGWCC	2 cut(s)	10, 960
BbsI	GAAGAC	1 cut(s)	99
BbvI	GCAGC	1 cut(s)	589
BccI	CCATC	2 cut(s)	602, 872
BciT130I	CCWGG	2 cut(s)	555, 751
BfmI	CTRYAG	1 cut(s)	252
BglI	GCCNNNNNGGC	1 cut(s)	137
BisI	GCNGC	2 cut(s)	357, 578
BlsI	GCNGC	2 cut(s)	358, 579
BmcAI	AGTACT	1 cut(s)	410
Bme1390I	CCNGG	2 cut(s)	555, 751
Bme18I	GGWCC	2 cut(s)	10, 960
BmgT120I	GGNCC	3 cut(s)	10, 777, 960
BmiI	GGNNCC	2 cut(s)	12, 601
BmrFI	CCNGG	2 cut(s)	555, 751
BpiI	GAAGAC	1 cut(s)	99
BpuEI	CTTGAG	1 cut(s)	503
BsaAI	YACGTR	1 cut(s)	764
BsaBI	GATNNNNATC	1 cut(s)	276
BsaJI	CCNNGG	1 cut(s)	522
Bsc4I	CCNNNNNNNGG	5 cut(s)	101, 102, 196, 254, 609
Bse1I	ACTGG	2 cut(s)	384, 476
Bse8I	GATNNNNATC	1 cut(s)	276
BseBI	CCWGG	2 cut(s)	555, 751
BseDI	CCNNGG	1 cut(s)	522
BseGI	GGATG	2 cut(s)	116, 942
BseJI	GATNNNNATC	1 cut(s)	276
BseLI	CCNNNNNNNGG	5 cut(s)	101, 102, 196, 254, 609
BseMII	CTCAG	3 cut(s)	69, 719, 807
BseNI	ACTGG	2 cut(s)	384, 476
BseRI	GAGGAG	1 cut(s)	74
BseXI	GCAGC	1 cut(s)	589
BsgI	GTGCAG	1 cut(s)	596
BshFI	GGCC	4 cut(s)	359, 443, 778, 908
BslI	CCNNNNNNNGG	5 cut(s)	101, 102, 196, 254, 609
BsnI	GGCC	4 cut(s)	359, 443, 778, 908
Bsp143I	GATC	4 cut(s)	271, 331, 746, 766
Bsp19I	CCATGG	1 cut(s)	522
BspACI	CCGC	4 cut(s)	96, 123, 129, 356
BspANI	GGCC	4 cut(s)	359, 443, 778, 908
BspCNI	CTCAG	3 cut(s)	68, 718, 808
BspHI	TCATGA	1 cut(s)	240
BspLI	GGNNCC	2 cut(s)	12, 601
BspPI	GGATC	3 cut(s)	279, 741, 761
BsrI	ACTGG	2 cut(s)	384, 476
BssECI	CCNNGG	1 cut(s)	522
BssMI	GATC	4 cut(s)	271, 331, 746, 766
BssT1I	CCWWGG	1 cut(s)	522
Bst2UI	CCWGG	2 cut(s)	555, 751
Bst4CI	ACNGT	3 cut(s)	253, 623, 640
BstBAI	YACGTR	1 cut(s)	764
BstC8I	GCNNGC	1 cut(s)	441
BstDEI	CTNAG	5 cut(s)	6, 55, 491, 705, 816
BstDSI	CCRYGG	1 cut(s)	522
BstENI	CCTNNNNNAGG	1 cut(s)	252
BstF5I	GGATG	2 cut(s)	116, 942
BstKTI	GATC	4 cut(s)	274, 334, 749, 769
BstMBI	GATC	4 cut(s)	271, 331, 746, 766
BstMWI	GCNNNNNNNGC	1 cut(s)	137
BstNI	CCWGG	2 cut(s)	555, 751
BstNSI	RCATGY	2 cut(s)	303, 724
BstSCI	CCNGG	2 cut(s)	553, 749
BstSFI	CTRYAG	1 cut(s)	252
BstV1I	GCAGC	1 cut(s)	589
BstV2I	GAAGAC	1 cut(s)	99
BstX2I	RGATCY	2 cut(s)	271, 746
BstYI	RGATCY	2 cut(s)	271, 746
BsuRI	GGCC	4 cut(s)	359, 443, 778, 908
BtgI	CCRYGG	1 cut(s)	522
BtsCI	GGATG	2 cut(s)	116, 942
BtsIMutI	CAGTG	3 cut(s)	391, 483, 628
Cac8I	GCNNGC	1 cut(s)	441
CciI	TCATGA	1 cut(s)	240
Cfr13I	GGNCC	3 cut(s)	10, 777, 960
Csp6I	GTAC	3 cut(s)	409, 540, 844
CviAII	CATG	6 cut(s)	241, 300, 523, 595, 680, 721
CviQI	GTAC	3 cut(s)	409, 540, 844
DdeI	CTNAG	5 cut(s)	6, 55, 491, 705, 816
DpnI	GATC	4 cut(s)	273, 333, 748, 768
DpnII	GATC	4 cut(s)	271, 331, 746, 766
EciI	GGCGGA	1 cut(s)	118
Eco130I	CCWWGG	1 cut(s)	522
Eco147I	AGGCCT	1 cut(s)	443
Eco32I	GATATC	1 cut(s)	629
Eco47I	GGWCC	2 cut(s)	10, 960
Eco57I	CTGAAG	1 cut(s)	227
EcoNI	CCTNNNNNAGG	1 cut(s)	252
EcoO109I	RGGNCCY	1 cut(s)	10
EcoRII	CCWGG	2 cut(s)	553, 749
EcoRV	GATATC	1 cut(s)	629
EcoT14I	CCWWGG	1 cut(s)	522
ErhI	CCWWGG	1 cut(s)	522
FaeI	CATG	6 cut(s)	244, 303, 526, 598, 683, 724
FalI	AAGNNNNNCTT	4 cut(s)	398, 430, 564, 596
FatI	CATG	6 cut(s)	240, 299, 522, 594, 679, 720
FauI	CCCGC	2 cut(s)	103, 130
FauNDI	CATATG	1 cut(s)	697
Fnu4HI	GCNGC	2 cut(s)	357, 578
FokI	GGATG	2 cut(s)	103, 949
Fsp4HI	GCNGC	2 cut(s)	357, 578
GluI	GCNGC	2 cut(s)	357, 578
HaeIII	GGCC	4 cut(s)	359, 443, 778, 908
Hin1II	CATG	6 cut(s)	244, 303, 526, 598, 683, 724
HincII	GTYRAC	1 cut(s)	643
HindII	GTYRAC	1 cut(s)	643
HinfI	GANTC	3 cut(s)	81, 221, 244
HphI	GGTGA	3 cut(s)	62, 141, 334
Hpy166II	GTNNAC	1 cut(s)	643
Hpy188I	TCNGA	6 cut(s)	7, 187, 230, 655, 708, 718
Hpy188III	TCNNGA	6 cut(s)	218, 241, 269, 305, 560, 926
Hpy8I	GTNNAC	1 cut(s)	643
HpyAV	CCTTC	6 cut(s)	54, 156, 202, 337, 370, 524
HpyCH4III	ACNGT	3 cut(s)	253, 623, 640
HpyCH4IV	ACGT	2 cut(s)	161, 763
HpyCH4V	TGCA	2 cut(s)	536, 577
HpyF10VI	GCNNNNNNNGC	1 cut(s)	137
HpyF3I	CTNAG	5 cut(s)	6, 55, 491, 705, 816
HpySE526I	ACGT	2 cut(s)	161, 763
Hsp92II	CATG	6 cut(s)	244, 303, 526, 598, 683, 724
Kzo9I	GATC	4 cut(s)	271, 331, 746, 766
LmnI	GCTCC	2 cut(s)	188, 688
Lsp1109I	GCAGC	1 cut(s)	589
MaeII	ACGT	2 cut(s)	161, 763
MaeIII	GTNAC	4 cut(s)	58, 295, 305, 797
MalI	GATC	4 cut(s)	273, 333, 748, 768
MboI	GATC	4 cut(s)	271, 331, 746, 766
MboII	GAAGA	6 cut(s)	39, 42, 99, 799, 802, 975
MflI	RGATCY	2 cut(s)	271, 746
MluCI	AATT	9 cut(s)	24, 236, 364, 378, 548, 614, 802, 820, 876
MlyI	GAGTC	1 cut(s)	75
MmeI	TCCRAC	1 cut(s)	210
MnlI	CCTC	9 cut(s)	64, 95, 136, 160, 251, 498, 520, 849, 898
MroXI	GAANNNNTTC	2 cut(s)	174, 503
MseI	TTAA	1 cut(s)	833
MslI	CAYNNNNRTG	2 cut(s)	476, 572
MspR9I	CCNGG	2 cut(s)	555, 751
MvaI	CCWGG	2 cut(s)	555, 751
MwoI	GCNNNNNNNGC	1 cut(s)	137
NcoI	CCATGG	1 cut(s)	522
NdeI	CATATG	1 cut(s)	697
NdeII	GATC	4 cut(s)	271, 331, 746, 766
NlaIII	CATG	6 cut(s)	244, 303, 526, 598, 683, 724
NlaIV	GGNNCC	2 cut(s)	12, 601
NmeAIII	GCCGAG	1 cut(s)	934
NmuCI	GTSAC	3 cut(s)	58, 295, 305
NspI	RCATGY	2 cut(s)	303, 724
OliI	CACNNNNGTG	1 cut(s)	572
PagI	TCATGA	1 cut(s)	240
PceI	AGGCCT	1 cut(s)	443
PciI	ACATGT	1 cut(s)	299
PcsI	WCGNNNNNNNCGW	1 cut(s)	736
PdmI	GAANNNNTTC	2 cut(s)	174, 503
PfeI	GAWTC	2 cut(s)	221, 244
PkrI	GCNGC	2 cut(s)	358, 579
PleI	GAGTC	1 cut(s)	75
PpsI	GAGTC	1 cut(s)	75
Ppu21I	YACGTR	1 cut(s)	764
PpuMI	RGGWCCY	1 cut(s)	10
PscI	ACATGT	1 cut(s)	299
Psp5II	RGGWCCY	1 cut(s)	10
Psp6I	CCWGG	2 cut(s)	553, 749
PspGI	CCWGG	2 cut(s)	553, 749
PspN4I	GGNNCC	2 cut(s)	12, 601
PspPI	GGNCC	3 cut(s)	10, 777, 960
PspPPI	RGGWCCY	1 cut(s)	10
PsuI	RGATCY	2 cut(s)	271, 746
RsaI	GTAC	3 cut(s)	410, 541, 845
RsaNI	GTAC	3 cut(s)	409, 540, 844
RseI	CAYNNNNRTG	2 cut(s)	476, 572
SaqAI	TTAA	1 cut(s)	833
SatI	GCNGC	2 cut(s)	357, 578
Sau3AI	GATC	4 cut(s)	271, 331, 746, 766
Sau96I	GGNCC	3 cut(s)	10, 777, 960
ScaI	AGTACT	1 cut(s)	410
SchI	GAGTC	1 cut(s)	75
ScrFI	CCNGG	2 cut(s)	555, 751
SfcI	CTRYAG	1 cut(s)	252
SinI	GGWCC	2 cut(s)	10, 960
SmiMI	CAYNNNNRTG	2 cut(s)	476, 572
SmlI	CTYRAG	1 cut(s)	482
SmoI	CTYRAG	1 cut(s)	482
Sse9I	AATT	9 cut(s)	24, 236, 364, 378, 548, 614, 802, 820, 876
SseBI	AGGCCT	1 cut(s)	443
SsiI	CCGC	4 cut(s)	96, 123, 129, 356
StuI	AGGCCT	1 cut(s)	443
StyD4I	CCNGG	2 cut(s)	553, 749
StyI	CCWWGG	1 cut(s)	522
TaaI	ACNGT	3 cut(s)	253, 623, 640
TaiI	ACGT	2 cut(s)	164, 766
TaqI	TCGA	1 cut(s)	730
TaqII	GACCGA	1 cut(s)	977
TasI	AATT	9 cut(s)	24, 236, 364, 378, 548, 614, 802, 820, 876
TatI	WGTACW	3 cut(s)	408, 539, 843
TauI	GCSGC	1 cut(s)	359
TfiI	GAWTC	2 cut(s)	221, 244
Tru1I	TTAA	1 cut(s)	833
Tru9I	TTAA	1 cut(s)	833
TscAI	CASTG	3 cut(s)	391, 483, 628
TseFI	GTSAC	3 cut(s)	58, 295, 305
TseI	GCWGC	1 cut(s)	577
Tsp45I	GTSAC	3 cut(s)	58, 295, 305
TspDTI	ATGAA	3 cut(s)	229, 672, 953
TspGWI	ACGGA	1 cut(s)	418
TspRI	CASTG	3 cut(s)	391, 483, 628
VpaK11BI	GGWCC	2 cut(s)	10, 960
XagI	CCTNNNNNAGG	1 cut(s)	252
XapI	RAATTY	2 cut(s)	236, 614
XceI	RCATGY	2 cut(s)	303, 724
XmnI	GAANNNNTTC	2 cut(s)	174, 503
ZrmI	AGTACT	1 cut(s)	410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.