Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0010334

Physical Location & Seq

Genomic Coordinates Forward (+)

3356315 .. 3360469

Gene Structure 4155 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1042900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGTCTGAGGTCCCAACACCAAAAATTACAGAAAAGGAGAAGCCTTCTTCTTCCTCAGCCACTTCAGCTCACCAACAACAACTCCTCTCTCTCCCCGCCAATGGGTCTTCTCTCTCATCCCCCGCCTCCGCTCCAAAGGCTTATCCTTCACCCACAGCAACGTACGAGGAAGTCGTTCAAAGCTCCGACCTTTTCTGGGAAAAGCTCAAGGAGTTTCACGATTCGTTCAGAACCAAATTCATGATTCCTACCGTAGGAGGAAAAACTCTGGATCTACATCTCCTTTTTGTAGAAGTCACATCTCGTGATGGGCTTGAAAAGGTGATTAGAGATCGCAAATGGAAGGAAGTGATTACAGCCTTCAATTTCCCAACAACAATTACCAGTGCTTCGTTTGTCTTACGGAAGTACTACTTGTCTTTGCTGTATCACTTTGAGCAGGCCTATTATTTCCACAAAGAAGTTTATAGCATACCAGTGCTTGAGCCTCTAAGGAAGAACCTTTTCAATGGGTCAGCCACCGTGGAGGAAGGTGCAAGTAGAAACCAATTTCCAGAAAGCACAGAAGTGCAGCTTGGTTGTTCAATCATGGGAACCATTGATGGGAAATTTGACAGTGGATATCTGGCTACTGTCAACTTGGGTTCTGATGAACTGAAAGGTGTCTTGTATCATGCTCCTACATCTACATATGTTTCTCAGAGCTTTTCGGACATGCCTACTCGACGGAACCGAAAGAGATCCAGGTTGGCATTACGTGATCCCTTTCGGCCCAAGTCAAACAGGAGTGGTTACAATTTCTTCTTCGCTGAGCATTATGCCAGATTAAAACCTTTGTACTATGGGCAAGAGAGAGCCATCAGCAAGAAAATTGGGTATCTATGGAACAATCTCACAGAGGCTGAGAAACAGGTTTATCAGGATAAAGCGATGAAGGACAAGGAGAGATACAGGACCGAACTGCTGGAATATAAATCTTCCTACAATCCTACGCAGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ARID HMG_box

Protein Analysis

334

Amino Acids

38.15

Weight (kDa)

9.21

Isoelectric Point (pI)

47.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARID	PF01388	62 - 146	3.8e-21	ARID/BRIGHT DNA binding domain
HMG_box_2	PF09011	255 - 324	4.1e-09	HMG-box domain
HMG_box	PF00505	258 - 325	1.1e-10	HMG (high mobility group) box

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13350
fragaria_vesca	FvH4_3g41610
malus_domestica	MD03G1042900.v1.1 MD11G1045900.v1.1 MD13G1138800.v1.1
prunus_persica	Prupe.6G035300_v2.0.a1 Prupe.6G035300_v2.0.a1
pyrus_communis	pycom02g14660 pycom03g03310 pycom11g03720
rosa_chinensis	RchiOBHm_Chr5g0074651
rosa_laevigata	RLG00000036494
rosa_multiflora	Rmu_sc0000909.1_g000033 Rmu_sc0008028.1_g000006
rosa_roxburghii	Rroxscaffold_1G00006890
rosa_rugosa	Rorug05G0433500
rosa_samantha	Rh5AG490500 Rh5BG511600 Rh5CG535400 Rh5DG524000
rosa_wichuraiana	Rw5G045430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	131
AciI	CCGC	3 cut(s)	96, 123, 129
AclWI	GGATC	3 cut(s)	279, 735, 755
AcsI	RAATTY	2 cut(s)	236, 608
AcuI	CTGAAG	1 cut(s)	48
AfaI	GTAC	3 cut(s)	164, 410, 839
AfiI	CCNNNNNNNGG	5 cut(s)	101, 102, 196, 254, 603
AgsI	TTSAA	5 cut(s)	179, 317, 364, 508, 585
AjnI	CCWGG	1 cut(s)	743
AjuI	GAANNNNNNNTTGG	2 cut(s)	558, 590
AleI	CACNNNNGTG	1 cut(s)	566
AluBI	AGCT	5 cut(s)	68, 183, 205, 574, 705
AluI	AGCT	5 cut(s)	68, 183, 205, 574, 705
AlwI	GGATC	3 cut(s)	279, 735, 755
AlwNI	CAGNNNCTG	1 cut(s)	902
AoxI	GGCC	2 cut(s)	441, 770
ApeKI	GCWGC	2 cut(s)	571, 994
ApoI	RAATTY	2 cut(s)	236, 608
Asp700I	GAANNNNTTC	2 cut(s)	174, 503
AspS9I	GGNCC	3 cut(s)	10, 771, 954
AsuHPI	GGTGA	3 cut(s)	62, 141, 334
AvaII	GGWCC	2 cut(s)	10, 954
BauI	CACGAG	1 cut(s)	303
BbsI	GAAGAC	1 cut(s)	99
BbvCI	CCTCAGC	1 cut(s)	55
BbvI	GCAGC	1 cut(s)	583
BccI	CCATC	3 cut(s)	302, 596, 866
BciT130I	CCWGG	1 cut(s)	745
BisI	GCNGC	2 cut(s)	572, 995
BlpI	GCTNAGC	1 cut(s)	810
BlsI	GCNGC	2 cut(s)	573, 996
BmcAI	AGTACT	1 cut(s)	410
Bme1390I	CCNGG	1 cut(s)	745
Bme18I	GGWCC	2 cut(s)	10, 954
BmgT120I	GGNCC	3 cut(s)	10, 771, 954
BmiI	GGNNCC	3 cut(s)	12, 595, 731
BmrFI	CCNGG	1 cut(s)	745
BpiI	GAAGAC	1 cut(s)	99
Bpu10I	CCTNAGC	1 cut(s)	55
Bpu1102I	GCTNAGC	1 cut(s)	810
BpuEI	CTTGAG	2 cut(s)	191, 503
BsaAI	YACGTR	1 cut(s)	758
BsaBI	GATNNNNATC	1 cut(s)	276
BsaJI	CCNNGG	1 cut(s)	522
BsaXI	ACNNNNNCTCC	2 cut(s)	66, 96
Bsc4I	CCNNNNNNNGG	5 cut(s)	101, 102, 196, 254, 603
Bse1I	ACTGG	2 cut(s)	384, 476
Bse8I	GATNNNNATC	1 cut(s)	276
BseBI	CCWGG	1 cut(s)	745
BseDI	CCNNGG	1 cut(s)	522
BseGI	GGATG	1 cut(s)	116
BseJI	GATNNNNATC	1 cut(s)	276
BseLI	CCNNNNNNNGG	5 cut(s)	101, 102, 196, 254, 603
BseMII	CTCAG	4 cut(s)	69, 713, 801, 894
BseNI	ACTGG	2 cut(s)	384, 476
BseRI	GAGGAG	1 cut(s)	74
BseXI	GCAGC	1 cut(s)	583
BsgI	GTGCAG	1 cut(s)	590
BshFI	GGCC	2 cut(s)	443, 772
BsiWI	CGTACG	1 cut(s)	162
BslI	CCNNNNNNNGG	5 cut(s)	101, 102, 196, 254, 603
BsnI	GGCC	2 cut(s)	443, 772
Bsp143I	GATC	4 cut(s)	271, 331, 740, 760
Bsp1720I	GCTNAGC	1 cut(s)	810
BspACI	CCGC	3 cut(s)	96, 123, 129
BspANI	GGCC	2 cut(s)	443, 772
BspCNI	CTCAG	4 cut(s)	68, 712, 802, 895
BspHI	TCATGA	1 cut(s)	240
BspLI	GGNNCC	3 cut(s)	12, 595, 731
BspPI	GGATC	3 cut(s)	279, 735, 755
BsrBI	CCGCTC	1 cut(s)	131
BsrI	ACTGG	2 cut(s)	384, 476
BssECI	CCNNGG	1 cut(s)	522
BssMI	GATC	4 cut(s)	271, 331, 740, 760
BssSI	CACGAG	1 cut(s)	303
Bst2BI	CACGAG	1 cut(s)	303
Bst2UI	CCWGG	1 cut(s)	745
Bst4CI	ACNGT	4 cut(s)	253, 523, 617, 634
BstBAI	YACGTR	1 cut(s)	758
BstC8I	GCNNGC	1 cut(s)	441
BstDEI	CTNAG	6 cut(s)	6, 55, 491, 699, 810, 903
BstDSI	CCRYGG	1 cut(s)	522
BstENI	CCTNNNNNAGG	1 cut(s)	252
BstF5I	GGATG	1 cut(s)	116
BstKTI	GATC	4 cut(s)	274, 334, 743, 763
BstMBI	GATC	4 cut(s)	271, 331, 740, 760
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 137
BstNI	CCWGG	1 cut(s)	745
BstNSI	RCATGY	1 cut(s)	718
BstSCI	CCNGG	1 cut(s)	743
BstV1I	GCAGC	1 cut(s)	583
BstV2I	GAAGAC	1 cut(s)	99
BstX2I	RGATCY	2 cut(s)	271, 740
BstYI	RGATCY	2 cut(s)	271, 740
BsuRI	GGCC	2 cut(s)	443, 772
BtgI	CCRYGG	1 cut(s)	522
BtgZI	GCGATG	1 cut(s)	944
BtsCI	GGATG	1 cut(s)	116
BtsIMutI	CAGTG	3 cut(s)	391, 483, 622
Cac8I	GCNNGC	1 cut(s)	441
CaiI	CAGNNNCTG	1 cut(s)	902
CciI	TCATGA	1 cut(s)	240
Cfr13I	GGNCC	3 cut(s)	10, 771, 954
Csp6I	GTAC	3 cut(s)	163, 409, 838
CviAII	CATG	4 cut(s)	241, 589, 674, 715
CviQI	GTAC	3 cut(s)	163, 409, 838
DdeI	CTNAG	6 cut(s)	6, 55, 491, 699, 810, 903
DpnI	GATC	4 cut(s)	273, 333, 742, 762
DpnII	GATC	4 cut(s)	271, 331, 740, 760
Eco147I	AGGCCT	1 cut(s)	443
Eco32I	GATATC	1 cut(s)	623
Eco47I	GGWCC	2 cut(s)	10, 954
Eco57I	CTGAAG	1 cut(s)	48
EcoNI	CCTNNNNNAGG	1 cut(s)	252
EcoO109I	RGGNCCY	1 cut(s)	10
EcoRII	CCWGG	1 cut(s)	743
EcoRV	GATATC	1 cut(s)	623
FaeI	CATG	4 cut(s)	244, 592, 677, 718
FalI	AAGNNNNNCTT	4 cut(s)	398, 430, 558, 590
FatI	CATG	4 cut(s)	240, 588, 673, 714
FauI	CCCGC	2 cut(s)	103, 130
FauNDI	CATATG	1 cut(s)	691
Fnu4HI	GCNGC	2 cut(s)	572, 995
FokI	GGATG	1 cut(s)	103
Fsp4HI	GCNGC	2 cut(s)	572, 995
GluI	GCNGC	2 cut(s)	572, 995
HaeIII	GGCC	2 cut(s)	443, 772
Hin1II	CATG	4 cut(s)	244, 592, 677, 718
HincII	GTYRAC	1 cut(s)	637
HindII	GTYRAC	1 cut(s)	637
HinfI	GANTC	2 cut(s)	221, 244
HphI	GGTGA	3 cut(s)	62, 141, 334
Hpy166II	GTNNAC	1 cut(s)	637
Hpy188I	TCNGA	6 cut(s)	7, 187, 230, 649, 702, 712
Hpy188III	TCNNGA	6 cut(s)	218, 241, 269, 305, 554, 920
Hpy8I	GTNNAC	1 cut(s)	637
Hpy99I	CGWCG	1 cut(s)	729
HpyAV	CCTTC	6 cut(s)	54, 156, 337, 370, 524, 928
HpyCH4III	ACNGT	4 cut(s)	253, 523, 617, 634
HpyCH4IV	ACGT	2 cut(s)	161, 757
HpyCH4V	TGCA	2 cut(s)	536, 571
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 137
HpyF3I	CTNAG	6 cut(s)	6, 55, 491, 699, 810, 903
HpySE526I	ACGT	2 cut(s)	161, 757
Hsp92II	CATG	4 cut(s)	244, 592, 677, 718
Kzo9I	GATC	4 cut(s)	271, 331, 740, 760
LmnI	GCTCC	3 cut(s)	136, 188, 682
Lsp1109I	GCAGC	1 cut(s)	583
MaeII	ACGT	2 cut(s)	161, 757
MaeIII	GTNAC	2 cut(s)	295, 791
MalI	GATC	4 cut(s)	273, 333, 742, 762
MbiI	CCGCTC	1 cut(s)	131
MboI	GATC	4 cut(s)	271, 331, 740, 760
MboII	GAAGA	7 cut(s)	39, 42, 99, 508, 793, 796, 969
MflI	RGATCY	2 cut(s)	271, 740
MluCI	AATT	8 cut(s)	24, 236, 364, 378, 548, 608, 796, 870
MmeI	TCCRAC	1 cut(s)	210
MnlI	CCTC	8 cut(s)	64, 95, 136, 160, 251, 498, 520, 892
MroXI	GAANNNNTTC	2 cut(s)	174, 503
MseI	TTAA	1 cut(s)	827
MslI	CAYNNNNRTG	2 cut(s)	476, 566
MspR9I	CCNGG	1 cut(s)	745
MvaI	CCWGG	1 cut(s)	745
MwoI	GCNNNNNNNGC	2 cut(s)	65, 137
NdeI	CATATG	1 cut(s)	691
NdeII	GATC	4 cut(s)	271, 331, 740, 760
NlaIII	CATG	4 cut(s)	244, 592, 677, 718
NlaIV	GGNNCC	3 cut(s)	12, 595, 731
NmuCI	GTSAC	1 cut(s)	295
NspI	RCATGY	1 cut(s)	718
OliI	CACNNNNGTG	1 cut(s)	566
PagI	TCATGA	1 cut(s)	240
PceI	AGGCCT	1 cut(s)	443
PcsI	WCGNNNNNNNCGW	2 cut(s)	171, 730
PdmI	GAANNNNTTC	2 cut(s)	174, 503
PfeI	GAWTC	2 cut(s)	221, 244
Pfl23II	CGTACG	1 cut(s)	162
PkrI	GCNGC	2 cut(s)	573, 996
Ppu21I	YACGTR	1 cut(s)	758
PpuMI	RGGWCCY	1 cut(s)	10
Psp5II	RGGWCCY	1 cut(s)	10
Psp6I	CCWGG	1 cut(s)	743
PspGI	CCWGG	1 cut(s)	743
PspLI	CGTACG	1 cut(s)	162
PspN4I	GGNNCC	3 cut(s)	12, 595, 731
PspPI	GGNCC	3 cut(s)	10, 771, 954
PspPPI	RGGWCCY	1 cut(s)	10
PstNI	CAGNNNCTG	1 cut(s)	902
PsuI	RGATCY	2 cut(s)	271, 740
RsaI	GTAC	3 cut(s)	164, 410, 839
RsaNI	GTAC	3 cut(s)	163, 409, 838
RseI	CAYNNNNRTG	2 cut(s)	476, 566
SaqAI	TTAA	1 cut(s)	827
SatI	GCNGC	2 cut(s)	572, 995
Sau3AI	GATC	4 cut(s)	271, 331, 740, 760
Sau96I	GGNCC	3 cut(s)	10, 771, 954
ScaI	AGTACT	1 cut(s)	410
ScrFI	CCNGG	1 cut(s)	745
SinI	GGWCC	2 cut(s)	10, 954
SmiMI	CAYNNNNRTG	2 cut(s)	476, 566
SmlI	CTYRAG	2 cut(s)	206, 482
SmoI	CTYRAG	2 cut(s)	206, 482
Sse9I	AATT	8 cut(s)	24, 236, 364, 378, 548, 608, 796, 870
SseBI	AGGCCT	1 cut(s)	443
SsiI	CCGC	3 cut(s)	96, 123, 129
StuI	AGGCCT	1 cut(s)	443
StyD4I	CCNGG	1 cut(s)	743
TaaI	ACNGT	4 cut(s)	253, 523, 617, 634
TaiI	ACGT	2 cut(s)	164, 760
TaqI	TCGA	1 cut(s)	724
TaqII	GACCGA	1 cut(s)	971
TasI	AATT	8 cut(s)	24, 236, 364, 378, 548, 608, 796, 870
TatI	WGTACW	2 cut(s)	408, 837
TfiI	GAWTC	2 cut(s)	221, 244
Tru1I	TTAA	1 cut(s)	827
Tru9I	TTAA	1 cut(s)	827
TscAI	CASTG	3 cut(s)	391, 483, 622
TseFI	GTSAC	1 cut(s)	295
TseI	GCWGC	2 cut(s)	571, 994
Tsp45I	GTSAC	1 cut(s)	295
TspDTI	ATGAA	3 cut(s)	229, 666, 947
TspGWI	ACGGA	2 cut(s)	418, 742
TspRI	CASTG	3 cut(s)	391, 483, 622
VpaK11BI	GGWCC	2 cut(s)	10, 954
XagI	CCTNNNNNAGG	1 cut(s)	252
XapI	RAATTY	2 cut(s)	236, 608
XceI	RCATGY	1 cut(s)	718
XmnI	GAANNNNTTC	2 cut(s)	174, 503
ZrmI	AGTACT	1 cut(s)	410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.