Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0010334

Physical Location & Seq

Genomic Coordinates Reverse (-)

34933879 .. 34938133

Gene Structure 4255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g41610.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGTCTGAGGTGCCAACAACACCAAATACAGGAAAGGAGGCTTCTTGCGCTATTAGTCCATCTCCACAACAACACCAACTGCTCACTAATGGCTCTTCTTCTTCTTCATCCCTCACCTCTACTTCAAAGGTCTACCCTCCACCCTCCGCCGAGTTTGGGGATGTTGTTCAAAGCTCTGACCTTTTCTGGCACAAGCTCAAGGAGTTTCACGCTTCCCTAGGAACCAAATTTATGATTCCTACCGTTGGAGGAAAAACTCTGGATCTGCATCTCCTTTTCGTAGAAGTCACATCTCGTGGTGGCATTGAAAAGGTGATTAGAGATCGCCAATGGAAAGAAGTGATTGTGGCCTTCAATTTCCCATCAACTATCACCAGCGCATCATTTGTCTTACGGAAGTACTACTTGTCTTTGCTCTATGACTTTGAGCAGGTCTATTATTTCCGTAAAGAAGTTCTTAGAATCCCAGTGCATGATCCGGAAGGCAAGAACCTTGACAATGGGTCAGCACGGAAGCTAAGTACCATCCGGTTTCAAGGTCAGGCCACCCAGATAGTAATGCAACCAGGCGGTTCCATTACGGGAACCATTGACAGAAAATGTGAAGAGGGATATGTCATTACTGTCCACTTGGGTTCTGAAGTTCTGACTGGTGTCTTGTACCATCATCCTGTGGCTGTGTCTCAGAATTTTTCTGAGATGCCTACTCAACGGCACCGAAAGAGATCCAGGTTGGCAACACGTGATCCCTCTCGGCCCAAGTCCAACAGGAGTGGCTATAATTTCTTCTTTGCTGAGCACTATGCTAGCTTAAAGCCTTTGTACTATGGCCAAGAGAGAGCCATCAGCAAGCAAATTGGGTATCTATGGAACAACCTTACAGAGGATGAGAAACAGGTTTATCAGGAAAAGGGGTTGCAGGACAAGGAGCGATACAAGACCGAAATGATGGAATATAGAGCACAGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ARID HMG_box

Protein Analysis

324

Amino Acids

36.75

Weight (kDa)

9.17

Isoelectric Point (pI)

44.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARID	PF01388	59 - 143	3.1e-22	ARID/BRIGHT DNA binding domain
HMG_box_2	PF09011	250 - 319	1.7e-09	HMG-box domain
HMG_box	PF00505	253 - 320	2.2e-10	HMG (high mobility group) box

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13350
fragaria_vesca	FvH4_3g41610
malus_domestica	MD03G1042900.v1.1 MD11G1045900.v1.1 MD13G1138800.v1.1
prunus_persica	Prupe.6G035300_v2.0.a1 Prupe.6G035300_v2.0.a1
pyrus_communis	pycom02g14660 pycom03g03310 pycom11g03720
rosa_chinensis	RchiOBHm_Chr5g0074651
rosa_laevigata	RLG00000036494
rosa_multiflora	Rmu_sc0000909.1_g000033 Rmu_sc0008028.1_g000006
rosa_roxburghii	Rroxscaffold_1G00006890
rosa_rugosa	Rorug05G0433500
rosa_samantha	Rh5AG490500 Rh5BG511600 Rh5CG535400 Rh5DG524000
rosa_wichuraiana	Rw5G045430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	421
AccB1I	GGYRCC	2 cut(s)	10, 714
AccI	GTMKAC	1 cut(s)	132
AccIII	TCCGGA	1 cut(s)	478
AciI	CCGC	2 cut(s)	147, 570
AclWI	GGATC	4 cut(s)	270, 470, 720, 740
AcoI	YGGCCR	1 cut(s)	829
AcsI	RAATTY	2 cut(s)	227, 688
AcuI	CTGAAG	1 cut(s)	660
AcvI	CACGTG	1 cut(s)	743
AfaI	GTAC	4 cut(s)	401, 523, 662, 824
AfiI	CCNNNNNNNGG	4 cut(s)	29, 156, 245, 883
AflIII	ACRYGT	1 cut(s)	740
AgsI	TTSAA	5 cut(s)	126, 170, 308, 355, 536
AhdI	GACNNNNNGTC	1 cut(s)	502
AjnI	CCWGG	2 cut(s)	565, 728
AluBI	AGCT	4 cut(s)	174, 196, 517, 810
AluI	AGCT	4 cut(s)	174, 196, 517, 810
Alw21I	GWGCWC	2 cut(s)	801, 964
Alw26I	GTCTC	1 cut(s)	687
AlwI	GGATC	4 cut(s)	270, 470, 720, 740
Aor13HI	TCCGGA	1 cut(s)	478
AoxI	GGCC	4 cut(s)	348, 543, 755, 829
ApoI	RAATTY	2 cut(s)	227, 688
AspA2I	CCTAGG	1 cut(s)	217
AspLEI	GCGC	2 cut(s)	50, 380
AspS9I	GGNCC	1 cut(s)	756
AsuHPI	GGTGA	3 cut(s)	106, 325, 364
AsuNHI	GCTAGC	1 cut(s)	806
AvrII	CCTAGG	1 cut(s)	217
BalI	TGGCCA	1 cut(s)	831
BanI	GGYRCC	2 cut(s)	10, 714
BauI	CACGAG	1 cut(s)	294
BbrPI	CACGTG	1 cut(s)	743
Bbv12I	GWGCWC	2 cut(s)	801, 964
BccI	CCATC	6 cut(s)	67, 370, 533, 672, 851, 943
BceAI	ACGGC	1 cut(s)	728
BciT130I	CCWGG	2 cut(s)	567, 730
BcoDI	GTCTC	1 cut(s)	687
BfaI	CTAG	2 cut(s)	218, 807
BfuAI	ACCTGC	1 cut(s)	421
BlnI	CCTAGG	1 cut(s)	217
BlpI	GCTNAGC	1 cut(s)	795
BmcAI	AGTACT	1 cut(s)	401
Bme1390I	CCNGG	2 cut(s)	567, 730
BmeRI	GACNNNNNGTC	1 cut(s)	502
BmgT120I	GGNCC	1 cut(s)	756
BmiI	GGNNCC	5 cut(s)	12, 223, 574, 586, 716
BmrFI	CCNGG	2 cut(s)	567, 730
BmrI	ACTGGG	1 cut(s)	461
BmsI	GCATC	3 cut(s)	277, 389, 690
BmtI	GCTAGC	1 cut(s)	810
BmuI	ACTGGG	1 cut(s)	461
BoxI	GACNNNNGTC	1 cut(s)	653
Bpu1102I	GCTNAGC	1 cut(s)	795
BpuEI	CTTGAG	1 cut(s)	182
BsaAI	YACGTR	1 cut(s)	743
BsaBI	GATNNNNATC	1 cut(s)	267
BsaJI	CCNNGG	1 cut(s)	217
BsaWI	WCCGGW	2 cut(s)	478, 528
Bsc4I	CCNNNNNNNGG	4 cut(s)	29, 156, 245, 883
Bse1I	ACTGG	2 cut(s)	467, 655
Bse8I	GATNNNNATC	1 cut(s)	267
BseAI	TCCGGA	1 cut(s)	478
BseBI	CCWGG	2 cut(s)	567, 730
BseDI	CCNNGG	1 cut(s)	217
BseGI	GGATG	5 cut(s)	107, 166, 525, 667, 892
BseJI	GATNNNNATC	1 cut(s)	267
BseLI	CCNNNNNNNGG	4 cut(s)	29, 156, 245, 883
BseMII	CTCAG	3 cut(s)	687, 698, 786
BseNI	ACTGG	2 cut(s)	467, 655
BshFI	GGCC	4 cut(s)	350, 545, 757, 831
BshNI	GGYRCC	2 cut(s)	10, 714
BsiHKAI	GWGCWC	2 cut(s)	801, 964
BsiSI	CCGG	2 cut(s)	479, 529
BslI	CCNNNNNNNGG	4 cut(s)	29, 156, 245, 883
BsmAI	GTCTC	1 cut(s)	687
BsnI	GGCC	4 cut(s)	350, 545, 757, 831
Bsp1286I	GDGCHC	2 cut(s)	801, 964
Bsp13I	TCCGGA	1 cut(s)	478
Bsp143I	GATC	5 cut(s)	262, 322, 475, 725, 745
Bsp1720I	GCTNAGC	1 cut(s)	795
BspACI	CCGC	2 cut(s)	147, 570
BspANI	GGCC	4 cut(s)	350, 545, 757, 831
BspCNI	CTCAG	3 cut(s)	688, 697, 787
BspEI	TCCGGA	1 cut(s)	478
BspLI	GGNNCC	5 cut(s)	12, 223, 574, 586, 716
BspMI	ACCTGC	1 cut(s)	421
BspOI	GCTAGC	1 cut(s)	810
BspPI	GGATC	4 cut(s)	270, 470, 720, 740
BspQI	GCTCTTC	1 cut(s)	100
BspT107I	GGYRCC	2 cut(s)	10, 714
BsrI	ACTGG	2 cut(s)	467, 655
BssECI	CCNNGG	1 cut(s)	217
BssMI	GATC	5 cut(s)	262, 322, 475, 725, 745
BssSI	CACGAG	1 cut(s)	294
BssT1I	CCWWGG	1 cut(s)	217
Bst2BI	CACGAG	1 cut(s)	294
Bst2UI	CCWGG	2 cut(s)	567, 730
Bst4CI	ACNGT	2 cut(s)	244, 625
Bst6I	CTCTTC	2 cut(s)	100, 600
BstBAI	YACGTR	1 cut(s)	743
BstC8I	GCNNGC	2 cut(s)	808, 851
BstDEI	CTNAG	6 cut(s)	6, 458, 518, 684, 696, 795
BstENI	CCTNNNNNAGG	1 cut(s)	881
BstF5I	GGATG	5 cut(s)	107, 166, 525, 667, 892
BstHHI	GCGC	2 cut(s)	50, 380
BstKTI	GATC	5 cut(s)	265, 325, 478, 728, 748
BstMAI	GTCTC	1 cut(s)	687
BstMBI	GATC	5 cut(s)	262, 322, 475, 725, 745
BstMWI	GCNNNNNNNGC	1 cut(s)	47
BstNI	CCWGG	2 cut(s)	567, 730
BstPAI	GACNNNNGTC	1 cut(s)	653
BstSCI	CCNGG	2 cut(s)	565, 728
BstX2I	RGATCY	2 cut(s)	262, 725
BstYI	RGATCY	2 cut(s)	262, 725
BsuRI	GGCC	4 cut(s)	350, 545, 757, 831
BtsCI	GGATG	5 cut(s)	107, 166, 525, 667, 892
BtsIMutI	CAGTG	1 cut(s)	474
BveI	ACCTGC	1 cut(s)	421
Cac8I	GCNNGC	2 cut(s)	808, 851
CfoI	GCGC	2 cut(s)	50, 380
Cfr13I	GGNCC	1 cut(s)	756
Csp6I	GTAC	4 cut(s)	400, 522, 661, 823
CspCI	CAANNNNNGTGG	2 cut(s)	754, 789
CviAII	CATG	1 cut(s)	473
CviQI	GTAC	4 cut(s)	400, 522, 661, 823
DdeI	CTNAG	6 cut(s)	6, 458, 518, 684, 696, 795
DpnI	GATC	5 cut(s)	264, 324, 477, 727, 747
DpnII	GATC	5 cut(s)	262, 322, 475, 725, 745
DriI	GACNNNNNGTC	1 cut(s)	502
EaeI	YGGCCR	1 cut(s)	829
Eam1104I	CTCTTC	2 cut(s)	100, 600
Eam1105I	GACNNNNNGTC	1 cut(s)	502
EarI	CTCTTC	2 cut(s)	100, 600
EciI	GGCGGA	1 cut(s)	136
Eco130I	CCWWGG	1 cut(s)	217
Eco57I	CTGAAG	1 cut(s)	660
Eco72I	CACGTG	1 cut(s)	743
EcoNI	CCTNNNNNAGG	1 cut(s)	881
EcoRII	CCWGG	2 cut(s)	565, 728
EcoT14I	CCWWGG	1 cut(s)	217
ErhI	CCWWGG	1 cut(s)	217
FaeI	CATG	1 cut(s)	476
FaiI	YATR	9 cut(s)	233, 420, 474, 615, 780, 804, 828, 868, 957
FalI	AAGNNNNNCTT	4 cut(s)	389, 421, 441, 473
FatI	CATG	1 cut(s)	472
FblI	GTMKAC	1 cut(s)	132
FokI	GGATG	5 cut(s)	94, 173, 512, 654, 899
FspBI	CTAG	2 cut(s)	218, 807
GlaI	GCGC	2 cut(s)	49, 379
HaeIII	GGCC	4 cut(s)	350, 545, 757, 831
HapII	CCGG	2 cut(s)	479, 529
HhaI	GCGC	2 cut(s)	50, 380
Hin1II	CATG	1 cut(s)	476
Hin6I	GCGC	2 cut(s)	48, 378
HinP1I	GCGC	2 cut(s)	48, 378
HinfI	GANTC	2 cut(s)	235, 462
HpaII	CCGG	2 cut(s)	479, 529
HphI	GGTGA	3 cut(s)	106, 325, 364
Hpy166II	GTNNAC	2 cut(s)	133, 628
Hpy188I	TCNGA	6 cut(s)	7, 178, 640, 648, 687, 697
Hpy188III	TCNNGA	3 cut(s)	260, 479, 905
Hpy8I	GTNNAC	2 cut(s)	133, 628
HpyAV	CCTTC	2 cut(s)	361, 476
HpyCH4III	ACNGT	2 cut(s)	244, 625
HpyCH4IV	ACGT	1 cut(s)	742
HpyCH4V	TGCA	4 cut(s)	268, 472, 562, 919
HpyF10VI	GCNNNNNNNGC	1 cut(s)	47
HpyF3I	CTNAG	6 cut(s)	6, 458, 518, 684, 696, 795
HpySE526I	ACGT	1 cut(s)	742
Hsp92II	CATG	1 cut(s)	476
HspAI	GCGC	2 cut(s)	48, 378
Kpn2I	TCCGGA	1 cut(s)	478
Kzo9I	GATC	5 cut(s)	262, 322, 475, 725, 745
LguI	GCTCTTC	1 cut(s)	100
LmnI	GCTCC	1 cut(s)	928
LweI	GCATC	3 cut(s)	277, 389, 690
MaeI	CTAG	2 cut(s)	218, 807
MaeII	ACGT	1 cut(s)	742
MaeIII	GTNAC	1 cut(s)	286
MalI	GATC	5 cut(s)	264, 324, 477, 727, 747
MboI	GATC	5 cut(s)	262, 322, 475, 725, 745
MboII	GAAGA	6 cut(s)	87, 90, 93, 96, 617, 778
MflI	RGATCY	2 cut(s)	262, 725
MhlI	GDGCHC	2 cut(s)	801, 964
MlsI	TGGCCA	1 cut(s)	831
MluCI	AATT	5 cut(s)	227, 355, 688, 781, 855
MluNI	TGGCCA	1 cut(s)	831
MmeI	TCCRAC	2 cut(s)	226, 789
MnlI	CCTC	9 cut(s)	31, 122, 127, 147, 154, 242, 601, 760, 877
Mox20I	TGGCCA	1 cut(s)	831
MroI	TCCGGA	1 cut(s)	478
MscI	TGGCCA	1 cut(s)	831
MseI	TTAA	1 cut(s)	812
Msp20I	TGGCCA	1 cut(s)	831
MspI	CCGG	2 cut(s)	479, 529
MspR9I	CCNGG	2 cut(s)	567, 730
MvaI	CCWGG	2 cut(s)	567, 730
MwoI	GCNNNNNNNGC	1 cut(s)	47
NdeII	GATC	5 cut(s)	262, 322, 475, 725, 745
NheI	GCTAGC	1 cut(s)	806
NlaIII	CATG	1 cut(s)	476
NlaIV	GGNNCC	5 cut(s)	12, 223, 574, 586, 716
NmeAIII	GCCGAG	2 cut(s)	175, 733
NmuCI	GTSAC	1 cut(s)	286
PciSI	GCTCTTC	1 cut(s)	100
PfeI	GAWTC	2 cut(s)	235, 462
PmaCI	CACGTG	1 cut(s)	743
PmlI	CACGTG	1 cut(s)	743
Ppu21I	YACGTR	1 cut(s)	743
PshAI	GACNNNNGTC	1 cut(s)	653
Psp6I	CCWGG	2 cut(s)	565, 728
PspCI	CACGTG	1 cut(s)	743
PspGI	CCWGG	2 cut(s)	565, 728
PspN4I	GGNNCC	5 cut(s)	12, 223, 574, 586, 716
PspPI	GGNCC	1 cut(s)	756
PsuI	RGATCY	2 cut(s)	262, 725
RsaI	GTAC	4 cut(s)	401, 523, 662, 824
RsaNI	GTAC	4 cut(s)	400, 522, 661, 823
SapI	GCTCTTC	1 cut(s)	100
SaqAI	TTAA	1 cut(s)	812
Sau3AI	GATC	5 cut(s)	262, 322, 475, 725, 745
Sau96I	GGNCC	1 cut(s)	756
ScaI	AGTACT	1 cut(s)	401
ScrFI	CCNGG	2 cut(s)	567, 730
SduI	GDGCHC	2 cut(s)	801, 964
SfaNI	GCATC	3 cut(s)	277, 389, 690
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
Sse9I	AATT	5 cut(s)	227, 355, 688, 781, 855
SsiI	CCGC	2 cut(s)	147, 570
SspMI	CTAG	2 cut(s)	218, 807
StyD4I	CCNGG	2 cut(s)	565, 728
StyI	CCWWGG	1 cut(s)	217
TaaI	ACNGT	2 cut(s)	244, 625
TaiI	ACGT	1 cut(s)	745
TaqII	GACCGA	1 cut(s)	956
TasI	AATT	5 cut(s)	227, 355, 688, 781, 855
TatI	WGTACW	2 cut(s)	399, 822
TfiI	GAWTC	2 cut(s)	235, 462
Tru1I	TTAA	1 cut(s)	812
Tru9I	TTAA	1 cut(s)	812
TscAI	CASTG	1 cut(s)	474
TseFI	GTSAC	1 cut(s)	286
Tsp45I	GTSAC	1 cut(s)	286
TspDTI	ATGAA	1 cut(s)	96
TspGWI	ACGGA	3 cut(s)	409, 434, 526
TspRI	CASTG	1 cut(s)	474
XagI	CCTNNNNNAGG	1 cut(s)	881
XapI	RAATTY	2 cut(s)	227, 688
XmaJI	CCTAGG	1 cut(s)	217
XmiI	GTMKAC	1 cut(s)	132
XspI	CTAG	2 cut(s)	218, 807
ZrmI	AGTACT	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.