Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008028.1

Orthogroup ID

OG0010334

Physical Location & Seq

Genomic Coordinates Forward (+)

21346 .. 25710

Gene Structure 4365 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008028.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

atgcaggtgaagtggttacgagaaccaattatggcatttggtggaggttctcttagtttgctactgctgggacggcggcggtggtgcgttggcgaggtggtcaccaggtgtttaacggcagcagcaactacgatagctgtcagtggtggtggcgatgacgtatggtgtcgtggtactgctcgttatcagggttctgggctggtctcttgtggctgggcctttggtgtttgggcttccctttggcccaggtctttcggaaaggaggcttctttggctattgttccagcttcacaacaccaagtgctcactcacagcgctaatgggtcttcttcatccctcacctctacttcaaaggtgtaccctccagcctcggccaagtttgaggatgtggttcaaagctcggaccttttctggcaaaagctcaaggagtttcacgattccctaggaaccaaaaaattcatgattcctactgttggaggaaaagctctggatatgcatctcctttttgtagaagtcacatctcgtggtggcattgaaaaggtgattagagatcgccaatggaaagaagtgattatggtcttcaatttcccaacaactattaccagtgcatcatttgtcttacggaagtactacttgtctttgctctatgactttgagcaggtctattatttccataaagaagttattagaatcccagtgcatgatccagaaggcaggagccttgacaatggatcagcacgggagcaaggtaccatccggtttcaaggtcaggccaccccgatagtaatgcaactgggcggttccattatgggaaccattgacagaaaatgtgaggagggatatgttattactgtaaacttgggttctgaggtgctgactggtatcttgtaccatcatcctgtggctgggtctcagaatttttctgagatgcctactcaacggaaccgaaagagatctaggttggcgacacgtgatccctctcggcccaagtccaacaggagtggctataatttcttcttcgctgagcactatgccagcttaaagcctttgtattatggccaagagagagccattagtaagcaaattgggtatctatggaacaatcttacagaagatgagaaacaggtttatcaggaaaaggggttgcaggacaaggagcgatacaagtccgagatgatggaatatagagcacagcaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ARID HMG_box

Protein Analysis

399

Amino Acids

45.01

Weight (kDa)

9.31

Isoelectric Point (pI)

42.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13350
fragaria_vesca	FvH4_3g41610
malus_domestica	MD03G1042900.v1.1 MD11G1045900.v1.1 MD13G1138800.v1.1
prunus_persica	Prupe.6G035300_v2.0.a1 Prupe.6G035300_v2.0.a1
pyrus_communis	pycom02g14660 pycom03g03310 pycom11g03720
rosa_chinensis	RchiOBHm_Chr5g0074651
rosa_laevigata	RLG00000036494
rosa_multiflora	Rmu_sc0000909.1_g000033 Rmu_sc0008028.1_g000006
rosa_roxburghii	Rroxscaffold_1G00006890
rosa_rugosa	Rorug05G0433500
rosa_samantha	Rh5AG490500 Rh5BG511600 Rh5CG535400 Rh5DG524000
rosa_wichuraiana	Rw5G045430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	649
Acc65I	GGTACC	1 cut(s)	749
AccB1I	GGYRCC	1 cut(s)	749
AciI	CCGC	3 cut(s)	76, 79, 798
AclWI	GGATC	3 cut(s)	698, 739, 968
AcoI	YGGCCR	2 cut(s)	372, 1057
AcsI	RAATTY	2 cut(s)	455, 916
AcvI	CACGTG	1 cut(s)	971
AdeI	CACNNNGTG	2 cut(s)	108, 301
AfaI	GTAC	5 cut(s)	175, 359, 629, 751, 890
AfeI	AGCGCT	1 cut(s)	316
AfiI	CCNNNNNNNGG	2 cut(s)	473, 905
AflIII	ACRYGT	1 cut(s)	968
AgsI	TTSAA	5 cut(s)	351, 395, 536, 583, 764
AjnI	CCWGG	2 cut(s)	104, 245
AluBI	AGCT	6 cut(s)	137, 287, 399, 421, 485, 1038
AluI	AGCT	6 cut(s)	137, 287, 399, 421, 485, 1038
Alw21I	GWGCWC	3 cut(s)	306, 1029, 1192
Alw26I	GTCTC	2 cut(s)	208, 915
AlwI	GGATC	3 cut(s)	698, 739, 968
Aor51HI	AGCGCT	1 cut(s)	316
AoxI	GGCC	6 cut(s)	216, 242, 372, 771, 983, 1057
ApeKI	GCWGC	2 cut(s)	119, 122
ApoI	RAATTY	2 cut(s)	455, 916
Asp718I	GGTACC	1 cut(s)	749
AspA2I	CCTAGG	1 cut(s)	442
AspLEI	GCGC	1 cut(s)	317
AspS9I	GGNCC	4 cut(s)	216, 243, 403, 984
AsuHPI	GGTGA	4 cut(s)	19, 94, 331, 553
AvaII	GGWCC	1 cut(s)	403
AvrII	CCTAGG	1 cut(s)	442
BalI	TGGCCA	1 cut(s)	1059
BanI	GGYRCC	1 cut(s)	749
BauI	CACGAG	1 cut(s)	522
BbrPI	CACGTG	1 cut(s)	971
BbsI	GAAGAC	2 cut(s)	318, 571
Bbv12I	GWGCWC	3 cut(s)	306, 1029, 1192
BbvI	GCAGC	2 cut(s)	131, 134
BccI	CCATC	3 cut(s)	761, 900, 1171
BceAI	ACGGC	2 cut(s)	89, 132
BcgI	CGANNNNNNTGC	2 cut(s)	769, 803
BciT130I	CCWGG	2 cut(s)	106, 247
BcoDI	GTCTC	2 cut(s)	208, 915
BfaI	CTAG	2 cut(s)	443, 957
BfoI	RGCGCY	1 cut(s)	318
BfuAI	ACCTGC	1 cut(s)	649
BglII	AGATCT	1 cut(s)	953
BisI	GCNGC	3 cut(s)	77, 120, 123
BlnI	CCTAGG	1 cut(s)	442
BlpI	GCTNAGC	1 cut(s)	1023
BlsI	GCNGC	3 cut(s)	78, 121, 124
BmcAI	AGTACT	1 cut(s)	629
Bme1390I	CCNGG	2 cut(s)	106, 247
Bme18I	GGWCC	1 cut(s)	403
BmgT120I	GGNCC	4 cut(s)	216, 243, 403, 984
BmiI	GGNNCC	6 cut(s)	448, 719, 751, 802, 814, 944
BmrFI	CCNGG	2 cut(s)	106, 247
BmrI	ACTGGG	2 cut(s)	689, 803
BmsI	GCATC	3 cut(s)	505, 617, 918
BmuI	ACTGGG	2 cut(s)	689, 803
BpiI	GAAGAC	2 cut(s)	318, 571
BpmI	CTGGAG	1 cut(s)	348
Bpu1102I	GCTNAGC	1 cut(s)	1023
BpuEI	CTTGAG	1 cut(s)	407
BsaAI	YACGTR	1 cut(s)	971
BsaBI	GATNNNNATC	1 cut(s)	495
BsaI	GGTCTC	2 cut(s)	208, 915
BsaJI	CCNNGG	3 cut(s)	245, 369, 442
BsaWI	WCCGGW	1 cut(s)	756
Bsc4I	CCNNNNNNNGG	2 cut(s)	473, 905
Bse1I	ACTGG	4 cut(s)	603, 695, 798, 883
Bse8I	GATNNNNATC	1 cut(s)	495
BseBI	CCWGG	2 cut(s)	106, 247
BseDI	CCNNGG	3 cut(s)	245, 369, 442
BseGI	GGATG	4 cut(s)	332, 391, 753, 895
BseJI	GATNNNNATC	1 cut(s)	495
BseLI	CCNNNNNNNGG	2 cut(s)	473, 905
BseMII	CTCAG	4 cut(s)	858, 915, 926, 1014
BseNI	ACTGG	4 cut(s)	603, 695, 798, 883
BseRI	GAGGAG	1 cut(s)	848
BseXI	GCAGC	2 cut(s)	131, 134
BseYI	CCCAGC	3 cut(s)	67, 213, 905
BshFI	GGCC	6 cut(s)	218, 244, 374, 773, 985, 1059
BshNI	GGYRCC	1 cut(s)	749
BsiHKAI	GWGCWC	3 cut(s)	306, 1029, 1192
BsiSI	CCGG	1 cut(s)	757
BslFI	GGGAC	1 cut(s)	84
BslI	CCNNNNNNNGG	2 cut(s)	473, 905
BsmAI	GTCTC	2 cut(s)	208, 915
BsmFI	GGGAC	1 cut(s)	84
BsnI	GGCC	6 cut(s)	218, 244, 374, 773, 985, 1059
Bso31I	GGTCTC	2 cut(s)	208, 915
Bsp1286I	GDGCHC	3 cut(s)	306, 1029, 1192
Bsp143I	GATC	5 cut(s)	550, 703, 731, 953, 973
Bsp1720I	GCTNAGC	1 cut(s)	1023
BspACI	CCGC	3 cut(s)	76, 79, 798
BspANI	GGCC	6 cut(s)	218, 244, 374, 773, 985, 1059
BspCNI	CTCAG	4 cut(s)	859, 916, 925, 1015
BspHI	TCATGA	1 cut(s)	459
BspLI	GGNNCC	6 cut(s)	448, 719, 751, 802, 814, 944
BspMI	ACCTGC	1 cut(s)	649
BspPI	GGATC	3 cut(s)	698, 739, 968
BspT107I	GGYRCC	1 cut(s)	749
BspTNI	GGTCTC	2 cut(s)	208, 915
BsrI	ACTGG	4 cut(s)	603, 695, 798, 883
BssECI	CCNNGG	3 cut(s)	245, 369, 442
BssMI	GATC	5 cut(s)	550, 703, 731, 953, 973
BssSI	CACGAG	1 cut(s)	522
BssT1I	CCWWGG	1 cut(s)	442
Bst2BI	CACGAG	1 cut(s)	522
Bst2UI	CCWGG	2 cut(s)	106, 247
Bst4CI	ACNGT	2 cut(s)	472, 853
BstBAI	YACGTR	1 cut(s)	971
BstC8I	GCNNGC	1 cut(s)	1036
BstDEI	CTNAG	5 cut(s)	53, 867, 912, 924, 1023
BstEII	GGTNACC	1 cut(s)	100
BstF5I	GGATG	4 cut(s)	332, 391, 753, 895
BstH2I	RGCGCY	1 cut(s)	318
BstHHI	GCGC	1 cut(s)	317
BstKTI	GATC	5 cut(s)	553, 706, 734, 956, 976
BstMAI	GTCTC	2 cut(s)	208, 915
BstMBI	GATC	5 cut(s)	550, 703, 731, 953, 973
BstMWI	GCNNNNNNNGC	2 cut(s)	73, 272
BstNI	CCWGG	2 cut(s)	106, 247
BstPI	GGTNACC	1 cut(s)	100
BstSCI	CCNGG	2 cut(s)	104, 245
BstV1I	GCAGC	2 cut(s)	131, 134
BstV2I	GAAGAC	2 cut(s)	318, 571
BstX2I	RGATCY	1 cut(s)	953
BstYI	RGATCY	1 cut(s)	953
BsuRI	GGCC	6 cut(s)	218, 244, 374, 773, 985, 1059
BtgZI	GCGATG	1 cut(s)	168
BtsCI	GGATG	4 cut(s)	332, 391, 753, 895
BtsIMutI	CAGTG	3 cut(s)	148, 610, 702
BveI	ACCTGC	1 cut(s)	649
Cac8I	GCNNGC	1 cut(s)	1036
CciI	TCATGA	1 cut(s)	459
CfoI	GCGC	1 cut(s)	317
Cfr13I	GGNCC	4 cut(s)	216, 243, 403, 984
CsiI	ACCWGGT	1 cut(s)	104
Csp6I	GTAC	5 cut(s)	174, 358, 628, 750, 889
CspCI	CAANNNNNGTGG	2 cut(s)	982, 1017
CviAII	CATG	2 cut(s)	460, 701
CviQI	GTAC	5 cut(s)	174, 358, 628, 750, 889
DdeI	CTNAG	5 cut(s)	53, 867, 912, 924, 1023
DpnI	GATC	5 cut(s)	552, 705, 733, 955, 975
DpnII	GATC	5 cut(s)	550, 703, 731, 953, 973
DraIII	CACNNNGTG	2 cut(s)	108, 301
EaeI	YGGCCR	2 cut(s)	372, 1057
Eco130I	CCWWGG	1 cut(s)	442
Eco31I	GGTCTC	2 cut(s)	208, 915
Eco47I	GGWCC	1 cut(s)	403
Eco47III	AGCGCT	1 cut(s)	316
Eco72I	CACGTG	1 cut(s)	971
Eco91I	GGTNACC	1 cut(s)	100
EcoO65I	GGTNACC	1 cut(s)	100
EcoRII	CCWGG	2 cut(s)	104, 245
EcoT14I	CCWWGG	1 cut(s)	442
EcoT22I	ATGCAT	1 cut(s)	498
ErhI	CCWWGG	1 cut(s)	442
FaeI	CATG	2 cut(s)	463, 704
FalI	AAGNNNNNCTT	2 cut(s)	617, 649
FaqI	GGGAC	1 cut(s)	84
FatI	CATG	2 cut(s)	459, 700
Fnu4HI	GCNGC	3 cut(s)	77, 120, 123
FokI	GGATG	4 cut(s)	319, 398, 740, 882
Fsp4HI	GCNGC	3 cut(s)	77, 120, 123
FspBI	CTAG	2 cut(s)	443, 957
GlaI	GCGC	1 cut(s)	316
GluI	GCNGC	3 cut(s)	77, 120, 123
GsaI	CCCAGC	3 cut(s)	71, 217, 909
GsuI	CTGGAG	1 cut(s)	348
HaeII	RGCGCY	1 cut(s)	318
HaeIII	GGCC	6 cut(s)	218, 244, 374, 773, 985, 1059
HapII	CCGG	1 cut(s)	757
HhaI	GCGC	1 cut(s)	317
Hin1II	CATG	2 cut(s)	463, 704
Hin6I	GCGC	1 cut(s)	315
HinP1I	GCGC	1 cut(s)	315
HinfI	GANTC	3 cut(s)	437, 463, 690
HpaII	CCGG	1 cut(s)	757
HphI	GGTGA	4 cut(s)	19, 94, 331, 553
Hpy166II	GTNNAC	2 cut(s)	358, 856
Hpy188I	TCNGA	6 cut(s)	257, 403, 868, 915, 925, 1171
Hpy188III	TCNNGA	5 cut(s)	434, 460, 488, 707, 1133
Hpy8I	GTNNAC	2 cut(s)	358, 856
HpyAV	CCTTC	1 cut(s)	704
HpyCH4III	ACNGT	2 cut(s)	472, 853
HpyCH4IV	ACGT	2 cut(s)	159, 970
HpyCH4V	TGCA	6 cut(s)	4, 496, 608, 700, 790, 1147
HpyF10VI	GCNNNNNNNGC	2 cut(s)	73, 272
HpyF3I	CTNAG	5 cut(s)	53, 867, 912, 924, 1023
HpySE526I	ACGT	2 cut(s)	159, 970
Hsp92II	CATG	2 cut(s)	463, 704
HspAI	GCGC	1 cut(s)	315
KpnI	GGTACC	1 cut(s)	753
Kzo9I	GATC	5 cut(s)	550, 703, 731, 953, 973
LmnI	GCTCC	3 cut(s)	717, 742, 1156
Lsp1109I	GCAGC	2 cut(s)	131, 134
LweI	GCATC	3 cut(s)	505, 617, 918
MabI	ACCWGGT	1 cut(s)	104
MaeI	CTAG	2 cut(s)	443, 957
MaeII	ACGT	2 cut(s)	159, 970
MaeIII	GTNAC	3 cut(s)	15, 100, 514
MalI	GATC	5 cut(s)	552, 705, 733, 955, 975
MboI	GATC	5 cut(s)	550, 703, 731, 953, 973
MboII	GAAGA	6 cut(s)	318, 321, 571, 1006, 1009, 1124
MflI	RGATCY	1 cut(s)	953
MhlI	GDGCHC	3 cut(s)	306, 1029, 1192
MlsI	TGGCCA	1 cut(s)	1059
MluCI	AATT	6 cut(s)	27, 455, 583, 916, 1009, 1083
MluNI	TGGCCA	1 cut(s)	1059
MmeI	TCCRAC	2 cut(s)	454, 1017
Mox20I	TGGCCA	1 cut(s)	1059
Mph1103I	ATGCAT	1 cut(s)	498
MscI	TGGCCA	1 cut(s)	1059
MseI	TTAA	2 cut(s)	113, 1040
Msp20I	TGGCCA	1 cut(s)	1059
MspI	CCGG	1 cut(s)	757
MspR9I	CCNGG	2 cut(s)	106, 247
MvaI	CCWGG	2 cut(s)	106, 247
MwoI	GCNNNNNNNGC	2 cut(s)	73, 272
NdeII	GATC	5 cut(s)	550, 703, 731, 953, 973
NlaIII	CATG	2 cut(s)	463, 704
NlaIV	GGNNCC	6 cut(s)	448, 719, 751, 802, 814, 944
NmeAIII	GCCGAG	2 cut(s)	350, 961
NmuCI	GTSAC	2 cut(s)	100, 514
NsiI	ATGCAT	1 cut(s)	498
PagI	TCATGA	1 cut(s)	459
PfeI	GAWTC	3 cut(s)	437, 463, 690
PkrI	GCNGC	3 cut(s)	78, 121, 124
PmaCI	CACGTG	1 cut(s)	971
PmlI	CACGTG	1 cut(s)	971
Ppu21I	YACGTR	1 cut(s)	971
Psp6I	CCWGG	2 cut(s)	104, 245
PspCI	CACGTG	1 cut(s)	971
PspEI	GGTNACC	1 cut(s)	100
PspFI	CCCAGC	3 cut(s)	67, 213, 905
PspGI	CCWGG	2 cut(s)	104, 245
PspN4I	GGNNCC	6 cut(s)	448, 719, 751, 802, 814, 944
PspPI	GGNCC	4 cut(s)	216, 243, 403, 984
PsuI	RGATCY	1 cut(s)	953
RsaI	GTAC	5 cut(s)	175, 359, 629, 751, 890
RsaNI	GTAC	5 cut(s)	174, 358, 628, 750, 889
SaqAI	TTAA	2 cut(s)	113, 1040
SatI	GCNGC	3 cut(s)	77, 120, 123
Sau3AI	GATC	5 cut(s)	550, 703, 731, 953, 973
Sau96I	GGNCC	4 cut(s)	216, 243, 403, 984
ScaI	AGTACT	1 cut(s)	629
ScrFI	CCNGG	2 cut(s)	106, 247
SduI	GDGCHC	3 cut(s)	306, 1029, 1192
SexAI	ACCWGGT	1 cut(s)	104
SfaNI	GCATC	3 cut(s)	505, 617, 918
SinI	GGWCC	1 cut(s)	403
SmlI	CTYRAG	1 cut(s)	422
SmoI	CTYRAG	1 cut(s)	422
Sse9I	AATT	6 cut(s)	27, 455, 583, 916, 1009, 1083
SsiI	CCGC	3 cut(s)	76, 79, 798
SspMI	CTAG	2 cut(s)	443, 957
StyD4I	CCNGG	2 cut(s)	104, 245
StyI	CCWWGG	1 cut(s)	442
TaaI	ACNGT	2 cut(s)	472, 853
TaiI	ACGT	2 cut(s)	162, 973
TasI	AATT	6 cut(s)	27, 455, 583, 916, 1009, 1083
TatI	WGTACW	1 cut(s)	627
TauI	GCSGC	1 cut(s)	79
TfiI	GAWTC	3 cut(s)	437, 463, 690
Tru1I	TTAA	2 cut(s)	113, 1040
Tru9I	TTAA	2 cut(s)	113, 1040
TscAI	CASTG	3 cut(s)	148, 610, 702
TseFI	GTSAC	2 cut(s)	100, 514
TseI	GCWGC	2 cut(s)	119, 122
Tsp45I	GTSAC	2 cut(s)	100, 514
TspDTI	ATGAA	2 cut(s)	321, 448
TspGWI	ACGGA	2 cut(s)	637, 955
TspRI	CASTG	3 cut(s)	148, 610, 702
VpaK11BI	GGWCC	1 cut(s)	403
XapI	RAATTY	2 cut(s)	455, 916
XmaJI	CCTAGG	1 cut(s)	442
XspI	CTAG	2 cut(s)	443, 957
ZrmI	AGTACT	1 cut(s)	629
Zsp2I	ATGCAT	1 cut(s)	498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.