Rh5DG524000

High mobility group B protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0010334
Physical Location & Seq
Reverse (-)
81230910 .. 81235314
4405 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG524000.1

Sequence Viewer

Length: 906 bp
ATGTCTGAGGTCCCAACAACACCAATTACAGGAAAGGAGGCTTCTTTGGCTATTGTTCCAGCTCCACAACACCAAGTGCTCACTCACAGCGCTAATGGGTCTTCTTCATCCCTCACCTCTACTTCCAAGGTGTACCCTCCAGCCTCGGCCAAGTTTGAGGATGTGGTTCAAAGCTCGGACCTTTTCTGGCAAAAGCTCAAGGAGTTTCACGATTCCCTAGGAACCAAAAAATTCATGATTCCTACTGTTGGAGGAAAAGCTCTGGATATGCATCTCCTTTTTGTAGAAGTCACATCTCGTGGTGGCATTGAAAAGGTGATTAGAGATCGCCAATGGAAAGAAGTGATTGTGGTCTTCAATTTCCCAACAACTATTACCAGTGCATCATTTGTCTTACGGAAGTACTACTTGTCTTTGCTCTATGACTTTGAGCAGGTCTATTATTTCCATAAAGAAGTTATTAGAATCCCAGTGCATGATCCAGAAGGCAGGAACCTTGACAATGGGTCAGCACGGGAGCAAGGTACCATCCGGTTTCAAGGTCAGGCCACCCCGATAGCAATGCAACCGGGCGGTTCCATTATGGGAACCATTGACAGAAAATGTGAGGAGGGATATGTTATTACTGTAAACTTGGGTTCTGAAGTGCTGACTGGTATCTTGTACCATCATCCTGTGGCTGGGTCTCAGAATTTTTCTGAGATTCCTACTCAACGGAACCGAAAGAGATCTAGGTTGGCAACACGTGATCCCTCTCGGCCCAAGTCCAACAGGAGTGGCTATAATTTCTTCTTCGCTGAGCACTATGCCAGCTTAAAGCCTTTGTATTATGGCCAAGAGAGAGCCATTAGCAAGCAAATTGGGTATCTATGGAACAACCTTACAGAGGATGAGAAACAGGTATAG

Protein Analysis

301

Amino Acids

33.91

Weight (kDa)

9.1

Isoelectric Point (pI)

42.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARID PF01388 59 - 144 6.4e-21 ARID/BRIGHT DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 424
Acc65I GGTACC 1 cut(s) 524
AccB1I GGYRCC 1 cut(s) 524
AciI CCGC 1 cut(s) 573
AclWI GGATC 2 cut(s) 473, 743
AcoI YGGCCR 2 cut(s) 147, 832
AcsI RAATTY 2 cut(s) 230, 691
AcuI CTGAAG 1 cut(s) 663
AcvI CACGTG 1 cut(s) 746
AdeI CACNNNGTG 1 cut(s) 76
AfaI GTAC 4 cut(s) 134, 404, 526, 665
AfeI AGCGCT 1 cut(s) 91
AfiI CCNNNNNNNGG 4 cut(s) 29, 248, 680, 886
AflIII ACRYGT 1 cut(s) 743
AgsI TTSAA 4 cut(s) 170, 311, 358, 539
AhdI GACNNNNNGTC 1 cut(s) 505
AluBI AGCT 5 cut(s) 62, 174, 196, 260, 813
AluI AGCT 5 cut(s) 62, 174, 196, 260, 813
Alw21I GWGCWC 2 cut(s) 81, 804
Alw26I GTCTC 1 cut(s) 690
AlwI GGATC 2 cut(s) 473, 743
Aor51HI AGCGCT 1 cut(s) 91
AoxI GGCC 4 cut(s) 147, 546, 758, 832
ApoI RAATTY 2 cut(s) 230, 691
Asp718I GGTACC 1 cut(s) 524
AspA2I CCTAGG 1 cut(s) 217
AspLEI GCGC 1 cut(s) 92
AspS9I GGNCC 3 cut(s) 10, 178, 759
AsuC2I CCSGG 1 cut(s) 570
AsuHPI GGTGA 2 cut(s) 106, 328
AvaII GGWCC 2 cut(s) 10, 178
AvrII CCTAGG 1 cut(s) 217
BalI TGGCCA 1 cut(s) 834
BanI GGYRCC 1 cut(s) 524
BauI CACGAG 1 cut(s) 297
BbrPI CACGTG 1 cut(s) 746
BbsI GAAGAC 2 cut(s) 93, 346
Bbv12I GWGCWC 2 cut(s) 81, 804
BccI CCATC 2 cut(s) 536, 675
BcgI CGANNNNNNTGC 2 cut(s) 544, 578
BcnI CCSGG 1 cut(s) 570
BcoDI GTCTC 1 cut(s) 690
BfaI CTAG 2 cut(s) 218, 732
BfoI RGCGCY 1 cut(s) 93
BfuAI ACCTGC 1 cut(s) 424
BglII AGATCT 1 cut(s) 728
BlnI CCTAGG 1 cut(s) 217
BlpI GCTNAGC 1 cut(s) 798
BmcAI AGTACT 1 cut(s) 404
Bme1390I CCNGG 1 cut(s) 570
Bme18I GGWCC 2 cut(s) 10, 178
BmeRI GACNNNNNGTC 1 cut(s) 505
BmgT120I GGNCC 3 cut(s) 10, 178, 759
BmiI GGNNCC 7 cut(s) 12, 223, 494, 526, 577, 589, 719
BmrFI CCNGG 1 cut(s) 570
BmrI ACTGGG 1 cut(s) 464
BmsI GCATC 2 cut(s) 280, 392
BmuI ACTGGG 1 cut(s) 464
BpiI GAAGAC 2 cut(s) 93, 346
BpmI CTGGAG 1 cut(s) 123
Bpu1102I GCTNAGC 1 cut(s) 798
BpuEI CTTGAG 1 cut(s) 182
BpuMI CCSGG 1 cut(s) 570
BsaAI YACGTR 1 cut(s) 746
BsaBI GATNNNNATC 1 cut(s) 270
BsaI GGTCTC 1 cut(s) 690
BsaJI CCNNGG 3 cut(s) 126, 144, 217
BsaWI WCCGGW 1 cut(s) 531
Bsc4I CCNNNNNNNGG 4 cut(s) 29, 248, 680, 886
Bse1I ACTGG 3 cut(s) 378, 470, 658
Bse3DI GCAATG 1 cut(s) 567
Bse8I GATNNNNATC 1 cut(s) 270
BseDI CCNNGG 3 cut(s) 126, 144, 217
BseGI GGATG 5 cut(s) 107, 166, 528, 670, 895
BseJI GATNNNNATC 1 cut(s) 270
BseLI CCNNNNNNNGG 4 cut(s) 29, 248, 680, 886
BseMI GCAATG 1 cut(s) 567
BseMII CTCAG 3 cut(s) 690, 701, 789
BseNI ACTGG 3 cut(s) 378, 470, 658
BseRI GAGGAG 1 cut(s) 623
BseYI CCCAGC 1 cut(s) 680
BshFI GGCC 4 cut(s) 149, 548, 760, 834
BshNI GGYRCC 1 cut(s) 524
BsiHKAI GWGCWC 2 cut(s) 81, 804
BsiSI CCGG 2 cut(s) 532, 569
BslI CCNNNNNNNGG 4 cut(s) 29, 248, 680, 886
BsmAI GTCTC 1 cut(s) 690
BsnI GGCC 4 cut(s) 149, 548, 760, 834
Bso31I GGTCTC 1 cut(s) 690
Bsp1286I GDGCHC 2 cut(s) 81, 804
Bsp143I GATC 4 cut(s) 325, 478, 728, 748
Bsp1720I GCTNAGC 1 cut(s) 798
BspACI CCGC 1 cut(s) 573
BspANI GGCC 4 cut(s) 149, 548, 760, 834
BspCNI CTCAG 3 cut(s) 691, 700, 790
BspHI TCATGA 1 cut(s) 234
BspLI GGNNCC 7 cut(s) 12, 223, 494, 526, 577, 589, 719
BspMI ACCTGC 1 cut(s) 424
BspPI GGATC 2 cut(s) 473, 743
BspT107I GGYRCC 1 cut(s) 524
BspTNI GGTCTC 1 cut(s) 690
BsrDI GCAATG 1 cut(s) 567
BsrI ACTGG 3 cut(s) 378, 470, 658
BssECI CCNNGG 3 cut(s) 126, 144, 217
BssMI GATC 4 cut(s) 325, 478, 728, 748
BssSI CACGAG 1 cut(s) 297
BssT1I CCWWGG 2 cut(s) 126, 217
Bst2BI CACGAG 1 cut(s) 297
Bst4CI ACNGT 2 cut(s) 247, 628
BstBAI YACGTR 1 cut(s) 746
BstC8I GCNNGC 2 cut(s) 811, 854
BstDEI CTNAG 4 cut(s) 6, 687, 699, 798
BstENI CCTNNNNNAGG 1 cut(s) 884
BstF5I GGATG 5 cut(s) 107, 166, 528, 670, 895
BstH2I RGCGCY 1 cut(s) 93
BstHHI GCGC 1 cut(s) 92
BstKTI GATC 4 cut(s) 328, 481, 731, 751
BstMAI GTCTC 1 cut(s) 690
BstMBI GATC 4 cut(s) 325, 478, 728, 748
BstMWI GCNNNNNNNGC 1 cut(s) 47
BstSCI CCNGG 1 cut(s) 568
BstV2I GAAGAC 2 cut(s) 93, 346
BstX2I RGATCY 1 cut(s) 728
BstYI RGATCY 1 cut(s) 728
BsuRI GGCC 4 cut(s) 149, 548, 760, 834
BtsCI GGATG 5 cut(s) 107, 166, 528, 670, 895
BtsIMutI CAGTG 2 cut(s) 385, 477
BveI ACCTGC 1 cut(s) 424
Cac8I GCNNGC 2 cut(s) 811, 854
CciI TCATGA 1 cut(s) 234
CfoI GCGC 1 cut(s) 92
Cfr13I GGNCC 3 cut(s) 10, 178, 759
Csp6I GTAC 4 cut(s) 133, 403, 525, 664
CspCI CAANNNNNGTGG 2 cut(s) 757, 792
CviAII CATG 2 cut(s) 235, 476
CviQI GTAC 4 cut(s) 133, 403, 525, 664
DdeI CTNAG 4 cut(s) 6, 687, 699, 798
DpnI GATC 4 cut(s) 327, 480, 730, 750
DpnII GATC 4 cut(s) 325, 478, 728, 748
DraIII CACNNNGTG 1 cut(s) 76
DriI GACNNNNNGTC 1 cut(s) 505
EaeI YGGCCR 2 cut(s) 147, 832
Eam1105I GACNNNNNGTC 1 cut(s) 505
Eco130I CCWWGG 2 cut(s) 126, 217
Eco31I GGTCTC 1 cut(s) 690
Eco47I GGWCC 2 cut(s) 10, 178
Eco47III AGCGCT 1 cut(s) 91
Eco57I CTGAAG 1 cut(s) 663
Eco72I CACGTG 1 cut(s) 746
EcoNI CCTNNNNNAGG 1 cut(s) 884
EcoO109I RGGNCCY 1 cut(s) 10
EcoT14I CCWWGG 2 cut(s) 126, 217
EcoT22I ATGCAT 1 cut(s) 273
ErhI CCWWGG 2 cut(s) 126, 217
FaeI CATG 2 cut(s) 238, 479
FalI AAGNNNNNCTT 2 cut(s) 392, 424
FatI CATG 2 cut(s) 234, 475
FokI GGATG 5 cut(s) 94, 173, 515, 657, 902
FspBI CTAG 2 cut(s) 218, 732
GlaI GCGC 1 cut(s) 91
GsaI CCCAGC 1 cut(s) 684
GsuI CTGGAG 1 cut(s) 123
HaeII RGCGCY 1 cut(s) 93
HaeIII GGCC 4 cut(s) 149, 548, 760, 834
HapII CCGG 2 cut(s) 532, 569
HhaI GCGC 1 cut(s) 92
Hin1II CATG 2 cut(s) 238, 479
Hin6I GCGC 1 cut(s) 90
HinP1I GCGC 1 cut(s) 90
HinfI GANTC 4 cut(s) 212, 238, 465, 703
HpaII CCGG 2 cut(s) 532, 569
HphI GGTGA 2 cut(s) 106, 328
Hpy166II GTNNAC 2 cut(s) 133, 631
Hpy188I TCNGA 5 cut(s) 7, 178, 643, 690, 700
Hpy188III TCNNGA 4 cut(s) 209, 235, 263, 482
Hpy8I GTNNAC 2 cut(s) 133, 631
HpyAV CCTTC 1 cut(s) 479
HpyCH4III ACNGT 2 cut(s) 247, 628
HpyCH4IV ACGT 1 cut(s) 745
HpyCH4V TGCA 4 cut(s) 271, 383, 475, 565
HpyF10VI GCNNNNNNNGC 1 cut(s) 47
HpyF3I CTNAG 4 cut(s) 6, 687, 699, 798
HpySE526I ACGT 1 cut(s) 745
Hsp92II CATG 2 cut(s) 238, 479
HspAI GCGC 1 cut(s) 90
KpnI GGTACC 1 cut(s) 528
Kzo9I GATC 4 cut(s) 325, 478, 728, 748
LmnI GCTCC 2 cut(s) 67, 517
LweI GCATC 2 cut(s) 280, 392
MaeI CTAG 2 cut(s) 218, 732
MaeII ACGT 1 cut(s) 745
MaeIII GTNAC 1 cut(s) 289
MalI GATC 4 cut(s) 327, 480, 730, 750
MboI GATC 4 cut(s) 325, 478, 728, 748
MboII GAAGA 5 cut(s) 93, 96, 346, 781, 784
MflI RGATCY 1 cut(s) 728
MhlI GDGCHC 2 cut(s) 81, 804
MlsI TGGCCA 1 cut(s) 834
MluCI AATT 6 cut(s) 24, 230, 358, 691, 784, 858
MluNI TGGCCA 1 cut(s) 834
MmeI TCCRAC 2 cut(s) 229, 792
Mox20I TGGCCA 1 cut(s) 834
Mph1103I ATGCAT 1 cut(s) 273
MscI TGGCCA 1 cut(s) 834
MseI TTAA 1 cut(s) 815
Msp20I TGGCCA 1 cut(s) 834
MspI CCGG 2 cut(s) 532, 569
MspR9I CCNGG 1 cut(s) 570
MwoI GCNNNNNNNGC 1 cut(s) 47
NciI CCSGG 1 cut(s) 570
NdeII GATC 4 cut(s) 325, 478, 728, 748
NlaIII CATG 2 cut(s) 238, 479
NlaIV GGNNCC 7 cut(s) 12, 223, 494, 526, 577, 589, 719
NmeAIII GCCGAG 2 cut(s) 125, 736
NmuCI GTSAC 1 cut(s) 289
NsiI ATGCAT 1 cut(s) 273
PagI TCATGA 1 cut(s) 234
PfeI GAWTC 4 cut(s) 212, 238, 465, 703
PmaCI CACGTG 1 cut(s) 746
PmlI CACGTG 1 cut(s) 746
Ppu21I YACGTR 1 cut(s) 746
PpuMI RGGWCCY 1 cut(s) 10
Psp5II RGGWCCY 1 cut(s) 10
PspCI CACGTG 1 cut(s) 746
PspFI CCCAGC 1 cut(s) 680
PspN4I GGNNCC 7 cut(s) 12, 223, 494, 526, 577, 589, 719
PspPI GGNCC 3 cut(s) 10, 178, 759
PspPPI RGGWCCY 1 cut(s) 10
PsuI RGATCY 1 cut(s) 728
RsaI GTAC 4 cut(s) 134, 404, 526, 665
RsaNI GTAC 4 cut(s) 133, 403, 525, 664
SaqAI TTAA 1 cut(s) 815
Sau3AI GATC 4 cut(s) 325, 478, 728, 748
Sau96I GGNCC 3 cut(s) 10, 178, 759
ScaI AGTACT 1 cut(s) 404
ScrFI CCNGG 1 cut(s) 570
SduI GDGCHC 2 cut(s) 81, 804
SfaNI GCATC 2 cut(s) 280, 392
SinI GGWCC 2 cut(s) 10, 178
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
Sse9I AATT 6 cut(s) 24, 230, 358, 691, 784, 858
SsiI CCGC 1 cut(s) 573
SspMI CTAG 2 cut(s) 218, 732
StyD4I CCNGG 1 cut(s) 568
StyI CCWWGG 2 cut(s) 126, 217
TaaI ACNGT 2 cut(s) 247, 628
TaiI ACGT 1 cut(s) 748
TasI AATT 6 cut(s) 24, 230, 358, 691, 784, 858
TatI WGTACW 1 cut(s) 402
TfiI GAWTC 4 cut(s) 212, 238, 465, 703
Tru1I TTAA 1 cut(s) 815
Tru9I TTAA 1 cut(s) 815
TscAI CASTG 2 cut(s) 385, 477
TseFI GTSAC 1 cut(s) 289
Tsp45I GTSAC 1 cut(s) 289
TspDTI ATGAA 2 cut(s) 96, 223
TspGWI ACGGA 2 cut(s) 412, 730
TspRI CASTG 2 cut(s) 385, 477
VpaK11BI GGWCC 2 cut(s) 10, 178
XagI CCTNNNNNAGG 1 cut(s) 884
XapI RAATTY 2 cut(s) 230, 691
XmaJI CCTAGG 1 cut(s) 217
XspI CTAG 2 cut(s) 218, 732
ZrmI AGTACT 1 cut(s) 404
Zsp2I ATGCAT 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.