pycom11g03720

High mobility group B protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0010334
Physical Location & Seq
Forward (+)
2886276 .. 2888693
2418 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g03720.1

Sequence Viewer

Length: 843 bp
ATGTCTGAGGTCCCAACACCAAAAATTACAGAAAAGGAGAAGACTTCTTCTTCTTCCTCTGCAGCCATTTCAGCTCACCAACAACAACTCCTCTCTCTCTCCGCCAATGGGTCTTCTGTCTCATCCCCCGCCTCCGCTCCAAGGGCTTATCCTTCACCCACAGCAAAGTATGAGGAAGTCGTTCAAAGCTCCGACCTTTTCTGGGAAAAGCTCAAGGAGTTTCACGATTCGTTCAGAACCAAATTCATGATTCCTACTGTTGGAGGAAAATCTCTGGATCTACATCTCCTTTTTGTTGAAGTCACATCTCGTGGTGGGCTTGACAAGGTGATTAGAGATCGCAAATGGAAGGAAGTGATTGTGGCCTTCAATTTCCCAACAACAATTACCAGTGCTTCATTTGTCTTACGGAAGTACTACTTGTCTTTGCTGTATCACTTTGAGCAGGCCTATTATCTCCATAAAGAAGTTTTTAGCATCCCAGTGCTTGAACCTGTAAGCAAGGACCTTTTCAATGGGTCAGCCACCGTGGAGGAAGGGGCGAGTAGAAACCAGTTTCCAGGTCAGGAAAGTGCAGAAGTGCAGCTTGGCTCTTCAATCATGGGAACCATTGATGGGAAATTTGACAGTGGATATCTGGTTACTGTCAACTTGGGTTCTGACGAACTGAAAGGTGTCTTGTATCATGCTCCTACAGCTACATATGTTTCTCAGAGTTTTTCGGACATGCCTACTCGACGGAACCGAAAGAGATCCAGGTTGGCATTACGATCGATCCCTCTCGGCCCAAGTCAAACAGGAGCGGTTACAATTTCTTCTTCGCCGAGCATTATGCTAGATTAA

Protein Analysis

281

Amino Acids

30.8

Weight (kDa)

8.6

Isoelectric Point (pI)

51.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARID PF01388 64 - 148 7.3e-22 ARID/BRIGHT DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 137, 803
AciI CCGC 4 cut(s) 102, 129, 135, 803
AclWI GGATC 3 cut(s) 285, 747, 769
AcsI RAATTY 2 cut(s) 242, 620
AfaI GTAC 1 cut(s) 416
AfiI CCNNNNNNNGG 5 cut(s) 108, 141, 202, 260, 615
AgsI TTSAA 6 cut(s) 185, 299, 370, 491, 514, 597
AjnI CCWGG 2 cut(s) 559, 755
AjuI GAANNNNNNNTTGG 2 cut(s) 570, 602
AluBI AGCT 5 cut(s) 74, 189, 211, 586, 698
AluI AGCT 5 cut(s) 74, 189, 211, 586, 698
Alw26I GTCTC 1 cut(s) 124
AlwI GGATC 3 cut(s) 285, 747, 769
AoxI GGCC 3 cut(s) 363, 447, 784
ApeKI GCWGC 2 cut(s) 62, 583
ApoI RAATTY 2 cut(s) 242, 620
Asp700I GAANNNNTTC 1 cut(s) 180
AspS9I GGNCC 3 cut(s) 10, 505, 785
AsuHPI GGTGA 3 cut(s) 68, 147, 340
AvaII GGWCC 2 cut(s) 10, 505
BauI CACGAG 1 cut(s) 309
BbsI GAAGAC 2 cut(s) 47, 105
BbvI GCAGC 2 cut(s) 74, 595
BccI CCATC 1 cut(s) 608
BcgI CGANNNNNNTGC 3 cut(s) 753, 787, 814
BciT130I CCWGG 2 cut(s) 561, 757
BcoDI GTCTC 1 cut(s) 124
BfaI CTAG 1 cut(s) 836
BfmI CTRYAG 2 cut(s) 60, 693
BisI GCNGC 2 cut(s) 63, 584
BlsI GCNGC 2 cut(s) 64, 585
BmcAI AGTACT 1 cut(s) 416
Bme1390I CCNGG 2 cut(s) 561, 757
Bme18I GGWCC 2 cut(s) 10, 505
BmgT120I GGNCC 3 cut(s) 10, 505, 785
BmiI GGNNCC 3 cut(s) 12, 607, 743
BmrFI CCNGG 2 cut(s) 561, 757
BmrI ACTGGG 1 cut(s) 476
BmsI GCATC 1 cut(s) 486
BmuI ACTGGG 1 cut(s) 476
BpiI GAAGAC 2 cut(s) 47, 105
BpuEI CTTGAG 1 cut(s) 197
Bsa29I ATCGAT 1 cut(s) 773
BsaBI GATNNNNATC 1 cut(s) 282
BsaJI CCNNGG 2 cut(s) 140, 528
BsaXI ACNNNNNCTCC 2 cut(s) 72, 102
Bsc4I CCNNNNNNNGG 5 cut(s) 108, 141, 202, 260, 615
Bse1I ACTGG 3 cut(s) 390, 482, 553
Bse8I GATNNNNATC 1 cut(s) 282
BseBI CCWGG 2 cut(s) 561, 757
BseCI ATCGAT 1 cut(s) 773
BseDI CCNNGG 2 cut(s) 140, 528
BseGI GGATG 2 cut(s) 122, 477
BseJI GATNNNNATC 1 cut(s) 282
BseLI CCNNNNNNNGG 5 cut(s) 108, 141, 202, 260, 615
BseMII CTCAG 1 cut(s) 725
BseNI ACTGG 3 cut(s) 390, 482, 553
BseRI GAGGAG 1 cut(s) 80
BseXI GCAGC 2 cut(s) 74, 595
BsgI GTGCAG 2 cut(s) 594, 602
Bsh1285I CGRYCG 1 cut(s) 773
BshFI GGCC 3 cut(s) 365, 449, 786
BshVI ATCGAT 1 cut(s) 773
BsiEI CGRYCG 1 cut(s) 773
BslI CCNNNNNNNGG 5 cut(s) 108, 141, 202, 260, 615
BsmAI GTCTC 1 cut(s) 124
BsnI GGCC 3 cut(s) 365, 449, 786
Bsp143I GATC 5 cut(s) 277, 337, 752, 770, 774
BspACI CCGC 4 cut(s) 102, 129, 135, 803
BspANI GGCC 3 cut(s) 365, 449, 786
BspCNI CTCAG 1 cut(s) 724
BspDI ATCGAT 1 cut(s) 773
BspHI TCATGA 1 cut(s) 246
BspLI GGNNCC 3 cut(s) 12, 607, 743
BspMAI CTGCAG 1 cut(s) 64
BspPI GGATC 3 cut(s) 285, 747, 769
BspQI GCTCTTC 1 cut(s) 598
BsrBI CCGCTC 2 cut(s) 137, 803
BsrI ACTGG 3 cut(s) 390, 482, 553
BssECI CCNNGG 2 cut(s) 140, 528
BssMI GATC 5 cut(s) 277, 337, 752, 770, 774
BssSI CACGAG 1 cut(s) 309
BssT1I CCWWGG 1 cut(s) 140
Bst2BI CACGAG 1 cut(s) 309
Bst2UI CCWGG 2 cut(s) 561, 757
Bst4CI ACNGT 4 cut(s) 259, 529, 629, 646
Bst6I CTCTTC 1 cut(s) 598
BstC8I GCNNGC 1 cut(s) 447
BstDEI CTNAG 2 cut(s) 6, 711
BstDSI CCRYGG 1 cut(s) 528
BstF5I GGATG 2 cut(s) 122, 477
BstKTI GATC 5 cut(s) 280, 340, 755, 773, 777
BstMAI GTCTC 1 cut(s) 124
BstMBI GATC 5 cut(s) 277, 337, 752, 770, 774
BstMCI CGRYCG 1 cut(s) 773
BstMWI GCNNNNNNNGC 3 cut(s) 71, 143, 695
BstNI CCWGG 2 cut(s) 561, 757
BstNSI RCATGY 1 cut(s) 730
BstSCI CCNGG 2 cut(s) 559, 755
BstSFI CTRYAG 2 cut(s) 60, 693
BstV1I GCAGC 2 cut(s) 74, 595
BstV2I GAAGAC 2 cut(s) 47, 105
BstX2I RGATCY 2 cut(s) 277, 752
BstYI RGATCY 2 cut(s) 277, 752
Bsu15I ATCGAT 1 cut(s) 773
BsuRI GGCC 3 cut(s) 365, 449, 786
BsuTUI ATCGAT 1 cut(s) 773
BtgI CCRYGG 1 cut(s) 528
BtsCI GGATG 2 cut(s) 122, 477
BtsIMutI CAGTG 3 cut(s) 397, 489, 634
Cac8I GCNNGC 1 cut(s) 447
CciI TCATGA 1 cut(s) 246
Cfr13I GGNCC 3 cut(s) 10, 505, 785
ClaI ATCGAT 1 cut(s) 773
Csp6I GTAC 1 cut(s) 415
CviAII CATG 4 cut(s) 247, 601, 686, 727
CviQI GTAC 1 cut(s) 415
DdeI CTNAG 2 cut(s) 6, 711
DpnI GATC 5 cut(s) 279, 339, 754, 772, 776
DpnII GATC 5 cut(s) 277, 337, 752, 770, 774
Eam1104I CTCTTC 1 cut(s) 598
EarI CTCTTC 1 cut(s) 598
EciI GGCGGA 1 cut(s) 91
Eco130I CCWWGG 1 cut(s) 140
Eco147I AGGCCT 1 cut(s) 449
Eco32I GATATC 1 cut(s) 635
Eco47I GGWCC 2 cut(s) 10, 505
EcoO109I RGGNCCY 2 cut(s) 10, 505
EcoRII CCWGG 2 cut(s) 559, 755
EcoRV GATATC 1 cut(s) 635
EcoT14I CCWWGG 1 cut(s) 140
ErhI CCWWGG 1 cut(s) 140
FaeI CATG 4 cut(s) 250, 604, 689, 730
FaiI YATR 9 cut(s) 171, 248, 462, 602, 687, 703, 705, 728, 833
FalI AAGNNNNNCTT 4 cut(s) 404, 436, 570, 602
FatI CATG 4 cut(s) 246, 600, 685, 726
FauI CCCGC 1 cut(s) 136
FauNDI CATATG 1 cut(s) 703
Fnu4HI GCNGC 2 cut(s) 63, 584
FokI GGATG 2 cut(s) 109, 464
Fsp4HI GCNGC 2 cut(s) 63, 584
FspBI CTAG 1 cut(s) 836
GluI GCNGC 2 cut(s) 63, 584
HaeIII GGCC 3 cut(s) 365, 449, 786
Hin1II CATG 4 cut(s) 250, 604, 689, 730
HincII GTYRAC 1 cut(s) 649
HindII GTYRAC 1 cut(s) 649
HinfI GANTC 2 cut(s) 227, 250
HphI GGTGA 3 cut(s) 68, 147, 340
Hpy166II GTNNAC 1 cut(s) 649
Hpy188I TCNGA 6 cut(s) 7, 193, 236, 661, 714, 724
Hpy188III TCNNGA 4 cut(s) 224, 247, 275, 566
Hpy8I GTNNAC 1 cut(s) 649
Hpy99I CGWCG 1 cut(s) 741
HpyAV CCTTC 4 cut(s) 162, 343, 376, 530
HpyCH4III ACNGT 4 cut(s) 259, 529, 629, 646
HpyCH4V TGCA 3 cut(s) 62, 575, 583
HpyF10VI GCNNNNNNNGC 3 cut(s) 71, 143, 695
HpyF3I CTNAG 2 cut(s) 6, 711
Hsp92II CATG 4 cut(s) 250, 604, 689, 730
Kzo9I GATC 5 cut(s) 277, 337, 752, 770, 774
LguI GCTCTTC 1 cut(s) 598
LmnI GCTCC 4 cut(s) 142, 194, 694, 800
Lsp1109I GCAGC 2 cut(s) 74, 595
LweI GCATC 1 cut(s) 486
MaeI CTAG 1 cut(s) 836
MaeIII GTNAC 3 cut(s) 301, 640, 805
MalI GATC 5 cut(s) 279, 339, 754, 772, 776
MbiI CCGCTC 2 cut(s) 137, 803
MboI GATC 5 cut(s) 277, 337, 752, 770, 774
MboII GAAGA 8 cut(s) 39, 42, 45, 52, 105, 585, 807, 810
MflI RGATCY 2 cut(s) 277, 752
MluCI AATT 6 cut(s) 24, 242, 370, 384, 620, 810
MmeI TCCRAC 2 cut(s) 216, 241
MnlI CCTC 7 cut(s) 67, 101, 142, 166, 257, 526, 789
MroXI GAANNNNTTC 1 cut(s) 180
MseI TTAA 1 cut(s) 841
MslI CAYNNNNRTG 1 cut(s) 482
MspR9I CCNGG 2 cut(s) 561, 757
MvaI CCWGG 2 cut(s) 561, 757
MwoI GCNNNNNNNGC 3 cut(s) 71, 143, 695
NdeI CATATG 1 cut(s) 703
NdeII GATC 5 cut(s) 277, 337, 752, 770, 774
NlaIII CATG 4 cut(s) 250, 604, 689, 730
NlaIV GGNNCC 3 cut(s) 12, 607, 743
NmeAIII GCCGAG 1 cut(s) 762
NmuCI GTSAC 1 cut(s) 301
NspI RCATGY 1 cut(s) 730
PagI TCATGA 1 cut(s) 246
PceI AGGCCT 1 cut(s) 449
PciSI GCTCTTC 1 cut(s) 598
PcsI WCGNNNNNNNCGW 1 cut(s) 742
PdmI GAANNNNTTC 1 cut(s) 180
PfeI GAWTC 2 cut(s) 227, 250
PkrI GCNGC 2 cut(s) 64, 585
Ple19I CGATCG 1 cut(s) 773
PpuMI RGGWCCY 2 cut(s) 10, 505
Psp5II RGGWCCY 2 cut(s) 10, 505
Psp6I CCWGG 2 cut(s) 559, 755
PspGI CCWGG 2 cut(s) 559, 755
PspN4I GGNNCC 3 cut(s) 12, 607, 743
PspPI GGNCC 3 cut(s) 10, 505, 785
PspPPI RGGWCCY 2 cut(s) 10, 505
PstI CTGCAG 1 cut(s) 64
PsuI RGATCY 2 cut(s) 277, 752
PvuI CGATCG 1 cut(s) 773
RsaI GTAC 1 cut(s) 416
RsaNI GTAC 1 cut(s) 415
RseI CAYNNNNRTG 1 cut(s) 482
SapI GCTCTTC 1 cut(s) 598
SaqAI TTAA 1 cut(s) 841
SatI GCNGC 2 cut(s) 63, 584
Sau3AI GATC 5 cut(s) 277, 337, 752, 770, 774
Sau96I GGNCC 3 cut(s) 10, 505, 785
ScaI AGTACT 1 cut(s) 416
ScrFI CCNGG 2 cut(s) 561, 757
SfaNI GCATC 1 cut(s) 486
SfcI CTRYAG 2 cut(s) 60, 693
SinI GGWCC 2 cut(s) 10, 505
SmiMI CAYNNNNRTG 1 cut(s) 482
SmlI CTYRAG 1 cut(s) 212
SmoI CTYRAG 1 cut(s) 212
Sse9I AATT 6 cut(s) 24, 242, 370, 384, 620, 810
SseBI AGGCCT 1 cut(s) 449
SsiI CCGC 4 cut(s) 102, 129, 135, 803
SspMI CTAG 1 cut(s) 836
StuI AGGCCT 1 cut(s) 449
StyD4I CCNGG 2 cut(s) 559, 755
StyI CCWWGG 1 cut(s) 140
TaaI ACNGT 4 cut(s) 259, 529, 629, 646
TaqI TCGA 2 cut(s) 736, 773
TasI AATT 6 cut(s) 24, 242, 370, 384, 620, 810
TatI WGTACW 1 cut(s) 414
TfiI GAWTC 2 cut(s) 227, 250
Tru1I TTAA 1 cut(s) 841
Tru9I TTAA 1 cut(s) 841
TscAI CASTG 3 cut(s) 397, 489, 634
TseFI GTSAC 1 cut(s) 301
TseI GCWGC 2 cut(s) 62, 583
Tsp45I GTSAC 1 cut(s) 301
TspDTI ATGAA 2 cut(s) 235, 387
TspGWI ACGGA 2 cut(s) 424, 754
TspRI CASTG 3 cut(s) 397, 489, 634
VpaK11BI GGWCC 2 cut(s) 10, 505
XapI RAATTY 2 cut(s) 242, 620
XceI RCATGY 1 cut(s) 730
XmnI GAANNNNTTC 1 cut(s) 180
XspI CTAG 1 cut(s) 836
ZrmI AGTACT 1 cut(s) 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.