Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0010334

Physical Location & Seq

Genomic Coordinates Forward (+)

2652977 .. 2657573

Gene Structure 4597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G035300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGTCTGAGGCCCCAACAACACCAATTACAGAAAAGGAGCCTTCTTCAGCCATTTCAGCTCAGCAGCAACAAGTGCGCACTGAAACCGCTAATGGGTCTTCCTCATCATCCCTCACCTCCACTACCAAGGTTTATCCTCCGGCCACGGCTAAGTATGAGGAAGTCGTTCAAAGCTCTGACCTTTTCTGGGAAAAGCTCAAGGAGTTTCACGATTCTTTCAGAACCAAATTCGTGATACCTACCGTAGGAGGAAAAGCTCTGGATCTACATCTCCTTTTTGTGGAAGTCACATCTCGTGGTGGACTTGAAAAGGTGATTAGAGATCGCAAATGGAAGGAAGTGATTGTGGTCTTCAATTTCCCAACAACAATTACCAGCGCTTCATTTGTCTTGCGGAAGTACTATTCATCTTTGCTCTATCACTTTGAGCAGGCCTATTATTTCCACAAAGAAGTTTTTAGCATCCCAGTGCTTGAACCTCTTAGCAGGAACCTTTTGAATGGGTCAGCCACCCTGGAGGAAGGTGCCAGTAGAAACCAGTTTCCAGGTCAGGAAAGCTCAGAAGTGCAGCTTGGCTGTTCAATCATGGGAAGCATCGATGGGAAATTTGACCATGGATATTTGGTTTCTGTGAACTTGGGTTCTGACGAGCTGAAAGGTGTCTTGTATCATGCTCCTACATATGTTTCTCAGAGTTTTTCGGACATGCCCACTCGACGGAATCGAAAGAGGTCCAGGTTGGCATTACGTGATCCCTCTCGGCCCAAGTCAAACAGGAGCGGGTACAATTTCTTCTTCGCTGAGCATTATGCCAGATTAAAGCCTTTGTACTATGGACAAGAGAGAGCCATCAGCAAGAAAATTGGGTTTCTATGGAACAATCTCACAGAGGCTGAGAAACAGGTATATCAGGAAAAAGGGATGCAGGACAAGGAGAGATACAGGACCGAAATGCTGGAATATAAATCTTCCGGCAATTTAACACAACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ARID HMG_box

Protein Analysis

331

Amino Acids

37.64

Weight (kDa)

9.1

Isoelectric Point (pI)

47.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13350
fragaria_vesca	FvH4_3g41610
malus_domestica	MD03G1042900.v1.1 MD11G1045900.v1.1 MD13G1138800.v1.1
prunus_persica	Prupe.6G035300_v2.0.a1 Prupe.6G035300_v2.0.a1
pyrus_communis	pycom02g14660 pycom03g03310 pycom11g03720
rosa_chinensis	RchiOBHm_Chr5g0074651
rosa_laevigata	RLG00000036494
rosa_multiflora	Rmu_sc0000909.1_g000033 Rmu_sc0008028.1_g000006
rosa_roxburghii	Rroxscaffold_1G00006890
rosa_rugosa	Rorug05G0433500
rosa_samantha	Rh5AG490500 Rh5BG511600 Rh5CG535400 Rh5DG524000
rosa_wichuraiana	Rw5G045430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	77
AccB1I	GGYRCC	1 cut(s)	524
AccBSI	CCGCTC	1 cut(s)	780
AciI	CCGC	3 cut(s)	87, 394, 780
AclWI	GGATC	2 cut(s)	270, 746
AcoI	YGGCCR	1 cut(s)	141
AcsI	RAATTY	2 cut(s)	227, 605
AcuI	CTGAAG	1 cut(s)	30
AfaI	GTAC	3 cut(s)	401, 785, 830
AfeI	AGCGCT	1 cut(s)	379
AfiI	CCNNNNNNNGG	5 cut(s)	93, 187, 245, 280, 717
AgsI	TTSAA	6 cut(s)	170, 308, 355, 476, 499, 582
AjnI	CCWGG	3 cut(s)	513, 544, 734
AjuI	GAANNNNNNNTTGG	2 cut(s)	555, 587
AluBI	AGCT	7 cut(s)	59, 174, 196, 257, 558, 571, 652
AluI	AGCT	7 cut(s)	59, 174, 196, 257, 558, 571, 652
AlwI	GGATC	2 cut(s)	270, 746
AlwNI	CAGNNNCTG	1 cut(s)	893
Aor51HI	AGCGCT	1 cut(s)	379
AoxI	GGCC	4 cut(s)	9, 141, 432, 761
ApeKI	GCWGC	2 cut(s)	64, 568
ApoI	RAATTY	2 cut(s)	227, 605
Asp700I	GAANNNNTTC	1 cut(s)	165
AspLEI	GCGC	2 cut(s)	78, 380
AspS9I	GGNCC	4 cut(s)	10, 732, 762, 945
AsuHPI	GGTGA	2 cut(s)	106, 325
AvaII	GGWCC	2 cut(s)	732, 945
BanI	GGYRCC	1 cut(s)	524
BarI	GAAGNNNNNNTAC	2 cut(s)	776, 808
BauI	CACGAG	1 cut(s)	294
BbsI	GAAGAC	2 cut(s)	90, 343
BbvI	GCAGC	2 cut(s)	76, 580
BccI	CCATC	2 cut(s)	593, 857
BceAI	ACGGC	1 cut(s)	162
BciT130I	CCWGG	3 cut(s)	515, 546, 736
BfoI	RGCGCY	1 cut(s)	381
BisI	GCNGC	2 cut(s)	65, 569
BlpI	GCTNAGC	2 cut(s)	60, 801
BlsI	GCNGC	2 cut(s)	66, 570
BmcAI	AGTACT	1 cut(s)	401
Bme1390I	CCNGG	3 cut(s)	515, 546, 736
Bme18I	GGWCC	2 cut(s)	732, 945
BmgT120I	GGNCC	4 cut(s)	10, 732, 762, 945
BmiI	GGNNCC	4 cut(s)	12, 39, 491, 526
BmrFI	CCNGG	3 cut(s)	515, 546, 736
BmrI	ACTGGG	1 cut(s)	461
BmsI	GCATC	3 cut(s)	471, 603, 912
BmuI	ACTGGG	1 cut(s)	461
BpiI	GAAGAC	2 cut(s)	90, 343
BpmI	CTGGAG	1 cut(s)	536
Bpu1102I	GCTNAGC	2 cut(s)	60, 801
BpuEI	CTTGAG	1 cut(s)	182
Bsa29I	ATCGAT	1 cut(s)	597
BsaAI	YACGTR	1 cut(s)	749
BsaBI	GATNNNNATC	1 cut(s)	267
BsaJI	CCNNGG	4 cut(s)	126, 144, 513, 613
Bsc4I	CCNNNNNNNGG	5 cut(s)	93, 187, 245, 280, 717
Bse1I	ACTGG	3 cut(s)	467, 528, 538
Bse8I	GATNNNNATC	1 cut(s)	267
BseBI	CCWGG	3 cut(s)	515, 546, 736
BseCI	ATCGAT	1 cut(s)	597
BseDI	CCNNGG	4 cut(s)	126, 144, 513, 613
BseGI	GGATG	3 cut(s)	107, 462, 927
BseJI	GATNNNNATC	1 cut(s)	267
BseLI	CCNNNNNNNGG	5 cut(s)	93, 187, 245, 280, 717
BseMII	CTCAG	5 cut(s)	74, 573, 704, 792, 885
BseNI	ACTGG	3 cut(s)	467, 528, 538
BseXI	GCAGC	2 cut(s)	76, 580
BsgI	GTGCAG	1 cut(s)	587
BshFI	GGCC	4 cut(s)	11, 143, 434, 763
BshNI	GGYRCC	1 cut(s)	524
BshVI	ATCGAT	1 cut(s)	597
BsiSI	CCGG	2 cut(s)	140, 972
BslI	CCNNNNNNNGG	5 cut(s)	93, 187, 245, 280, 717
BsnI	GGCC	4 cut(s)	11, 143, 434, 763
Bsp143I	GATC	3 cut(s)	262, 322, 751
Bsp1720I	GCTNAGC	2 cut(s)	60, 801
Bsp19I	CCATGG	1 cut(s)	613
BspACI	CCGC	3 cut(s)	87, 394, 780
BspANI	GGCC	4 cut(s)	11, 143, 434, 763
BspCNI	CTCAG	5 cut(s)	73, 572, 703, 793, 886
BspDI	ATCGAT	1 cut(s)	597
BspLI	GGNNCC	4 cut(s)	12, 39, 491, 526
BspPI	GGATC	2 cut(s)	270, 746
BspT107I	GGYRCC	1 cut(s)	524
BsrBI	CCGCTC	1 cut(s)	780
BsrI	ACTGG	3 cut(s)	467, 528, 538
BssECI	CCNNGG	4 cut(s)	126, 144, 513, 613
BssMI	GATC	3 cut(s)	262, 322, 751
BssSI	CACGAG	1 cut(s)	294
BssT1I	CCWWGG	2 cut(s)	126, 613
Bst2BI	CACGAG	1 cut(s)	294
Bst2UI	CCWGG	3 cut(s)	515, 546, 736
Bst4CI	ACNGT	2 cut(s)	244, 990
BstAPI	GCANNNNNTGC	1 cut(s)	73
BstBAI	YACGTR	1 cut(s)	749
BstC8I	GCNNGC	1 cut(s)	432
BstDEI	CTNAG	8 cut(s)	6, 60, 150, 482, 559, 690, 801, 894
BstDSI	CCRYGG	2 cut(s)	144, 613
BstENI	CCTNNNNNAGG	1 cut(s)	243
BstF5I	GGATG	3 cut(s)	107, 462, 927
BstH2I	RGCGCY	1 cut(s)	381
BstHHI	GCGC	2 cut(s)	78, 380
BstKTI	GATC	3 cut(s)	265, 325, 754
BstMBI	GATC	3 cut(s)	262, 322, 751
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 73
BstNI	CCWGG	3 cut(s)	515, 546, 736
BstNSI	RCATGY	1 cut(s)	709
BstSCI	CCNGG	3 cut(s)	513, 544, 734
BstV1I	GCAGC	2 cut(s)	76, 580
BstV2I	GAAGAC	2 cut(s)	90, 343
BstX2I	RGATCY	1 cut(s)	262
BstYI	RGATCY	1 cut(s)	262
Bsu15I	ATCGAT	1 cut(s)	597
BsuRI	GGCC	4 cut(s)	11, 143, 434, 763
BsuTUI	ATCGAT	1 cut(s)	597
BtgI	CCRYGG	2 cut(s)	144, 613
BtsCI	GGATG	3 cut(s)	107, 462, 927
BtsIMutI	CAGTG	2 cut(s)	78, 474
Cac8I	GCNNGC	1 cut(s)	432
CaiI	CAGNNNCTG	1 cut(s)	893
CfoI	GCGC	2 cut(s)	78, 380
Cfr13I	GGNCC	4 cut(s)	10, 732, 762, 945
ClaI	ATCGAT	1 cut(s)	597
Csp6I	GTAC	3 cut(s)	400, 784, 829
CviAII	CATG	4 cut(s)	586, 614, 671, 706
CviQI	GTAC	3 cut(s)	400, 784, 829
DdeI	CTNAG	8 cut(s)	6, 60, 150, 482, 559, 690, 801, 894
DpnI	GATC	3 cut(s)	264, 324, 753
DpnII	GATC	3 cut(s)	262, 322, 751
EaeI	YGGCCR	1 cut(s)	141
Eco130I	CCWWGG	2 cut(s)	126, 613
Eco147I	AGGCCT	1 cut(s)	434
Eco47I	GGWCC	2 cut(s)	732, 945
Eco47III	AGCGCT	1 cut(s)	379
Eco57I	CTGAAG	1 cut(s)	30
EcoNI	CCTNNNNNAGG	1 cut(s)	243
EcoO109I	RGGNCCY	1 cut(s)	10
EcoRII	CCWGG	3 cut(s)	513, 544, 734
EcoT14I	CCWWGG	2 cut(s)	126, 613
ErhI	CCWWGG	2 cut(s)	126, 613
FaeI	CATG	4 cut(s)	589, 617, 674, 709
FalI	AAGNNNNNCTT	2 cut(s)	555, 587
FatI	CATG	4 cut(s)	585, 613, 670, 705
FauI	CCCGC	1 cut(s)	773
FauNDI	CATATG	1 cut(s)	682
Fnu4HI	GCNGC	2 cut(s)	65, 569
FokI	GGATG	3 cut(s)	94, 449, 934
Fsp4HI	GCNGC	2 cut(s)	65, 569
FspAI	RTGCGCAY	1 cut(s)	77
FspI	TGCGCA	1 cut(s)	77
GlaI	GCGC	2 cut(s)	77, 379
GluI	GCNGC	2 cut(s)	65, 569
GsuI	CTGGAG	1 cut(s)	536
HaeII	RGCGCY	1 cut(s)	381
HaeIII	GGCC	4 cut(s)	11, 143, 434, 763
HapII	CCGG	2 cut(s)	140, 972
HhaI	GCGC	2 cut(s)	78, 380
Hin1II	CATG	4 cut(s)	589, 617, 674, 709
Hin6I	GCGC	2 cut(s)	76, 378
HinP1I	GCGC	2 cut(s)	76, 378
HinfI	GANTC	2 cut(s)	212, 721
HpaII	CCGG	2 cut(s)	140, 972
HphI	GGTGA	2 cut(s)	106, 325
Hpy166II	GTNNAC	2 cut(s)	302, 634
Hpy188I	TCNGA	7 cut(s)	7, 178, 221, 562, 646, 693, 703
Hpy188III	TCNNGA	5 cut(s)	209, 232, 260, 551, 911
Hpy8I	GTNNAC	2 cut(s)	302, 634
Hpy99I	CGWCG	1 cut(s)	720
HpyAV	CCTTC	3 cut(s)	51, 328, 515
HpyCH4III	ACNGT	2 cut(s)	244, 990
HpyCH4IV	ACGT	1 cut(s)	748
HpyCH4V	TGCA	2 cut(s)	568, 925
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 73
HpyF3I	CTNAG	8 cut(s)	6, 60, 150, 482, 559, 690, 801, 894
HpySE526I	ACGT	1 cut(s)	748
Hsp92II	CATG	4 cut(s)	589, 617, 674, 709
HspAI	GCGC	2 cut(s)	76, 378
Kzo9I	GATC	3 cut(s)	262, 322, 751
LmnI	GCTCC	3 cut(s)	37, 679, 777
Lsp1109I	GCAGC	2 cut(s)	76, 580
LweI	GCATC	3 cut(s)	471, 603, 912
MaeII	ACGT	1 cut(s)	748
MaeIII	GTNAC	1 cut(s)	286
MalI	GATC	3 cut(s)	264, 324, 753
MbiI	CCGCTC	1 cut(s)	780
MboI	GATC	3 cut(s)	262, 322, 751
MboII	GAAGA	6 cut(s)	36, 90, 343, 784, 787, 960
MflI	RGATCY	1 cut(s)	262
MluCI	AATT	8 cut(s)	24, 227, 355, 369, 605, 787, 861, 976
MroXI	GAANNNNTTC	1 cut(s)	165
MseI	TTAA	2 cut(s)	818, 980
MslI	CAYNNNNRTG	1 cut(s)	467
MspI	CCGG	2 cut(s)	140, 972
MspR9I	CCNGG	3 cut(s)	515, 546, 736
MvaI	CCWGG	3 cut(s)	515, 546, 736
MwoI	GCNNNNNNNGC	2 cut(s)	56, 73
NcoI	CCATGG	1 cut(s)	613
NdeI	CATATG	1 cut(s)	682
NdeII	GATC	3 cut(s)	262, 322, 751
NlaIII	CATG	4 cut(s)	589, 617, 674, 709
NlaIV	GGNNCC	4 cut(s)	12, 39, 491, 526
NmeAIII	GCCGAG	1 cut(s)	739
NmuCI	GTSAC	1 cut(s)	286
NsbI	TGCGCA	1 cut(s)	77
NspI	RCATGY	1 cut(s)	709
PceI	AGGCCT	1 cut(s)	434
PcsI	WCGNNNNNNNCGW	1 cut(s)	721
PdmI	GAANNNNTTC	1 cut(s)	165
PfeI	GAWTC	2 cut(s)	212, 721
PkrI	GCNGC	2 cut(s)	66, 570
Ppu21I	YACGTR	1 cut(s)	749
Psp6I	CCWGG	3 cut(s)	513, 544, 734
PspGI	CCWGG	3 cut(s)	513, 544, 734
PspN4I	GGNNCC	4 cut(s)	12, 39, 491, 526
PspPI	GGNCC	4 cut(s)	10, 732, 762, 945
PstNI	CAGNNNCTG	1 cut(s)	893
PsuI	RGATCY	1 cut(s)	262
RsaI	GTAC	3 cut(s)	401, 785, 830
RsaNI	GTAC	3 cut(s)	400, 784, 829
RseI	CAYNNNNRTG	1 cut(s)	467
SaqAI	TTAA	2 cut(s)	818, 980
SatI	GCNGC	2 cut(s)	65, 569
Sau3AI	GATC	3 cut(s)	262, 322, 751
Sau96I	GGNCC	4 cut(s)	10, 732, 762, 945
ScaI	AGTACT	1 cut(s)	401
ScrFI	CCNGG	3 cut(s)	515, 546, 736
SfaNI	GCATC	3 cut(s)	471, 603, 912
SinI	GGWCC	2 cut(s)	732, 945
SmiMI	CAYNNNNRTG	1 cut(s)	467
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
Sse9I	AATT	8 cut(s)	24, 227, 355, 369, 605, 787, 861, 976
SseBI	AGGCCT	1 cut(s)	434
SsiI	CCGC	3 cut(s)	87, 394, 780
StuI	AGGCCT	1 cut(s)	434
StyD4I	CCNGG	3 cut(s)	513, 544, 734
StyI	CCWWGG	2 cut(s)	126, 613
TaaI	ACNGT	2 cut(s)	244, 990
TaiI	ACGT	1 cut(s)	751
TaqI	TCGA	3 cut(s)	597, 715, 724
TaqII	GACCGA	1 cut(s)	962
TasI	AATT	8 cut(s)	24, 227, 355, 369, 605, 787, 861, 976
TatI	WGTACW	2 cut(s)	399, 828
TfiI	GAWTC	2 cut(s)	212, 721
Tru1I	TTAA	2 cut(s)	818, 980
Tru9I	TTAA	2 cut(s)	818, 980
TscAI	CASTG	2 cut(s)	85, 474
TseFI	GTSAC	1 cut(s)	286
TseI	GCWGC	2 cut(s)	64, 568
Tsp45I	GTSAC	1 cut(s)	286
TspDTI	ATGAA	2 cut(s)	372, 396
TspGWI	ACGGA	1 cut(s)	733
TspRI	CASTG	2 cut(s)	85, 474
VpaK11BI	GGWCC	2 cut(s)	732, 945
XagI	CCTNNNNNAGG	1 cut(s)	243
XapI	RAATTY	2 cut(s)	227, 605
XceI	RCATGY	1 cut(s)	709
XmnI	GAANNNNTTC	1 cut(s)	165
ZrmI	AGTACT	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.