Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0010334

Physical Location & Seq

Genomic Coordinates Reverse (-)

11245714 .. 11246097

Gene Structure 384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g14660.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGAAATCGAATCAAGTCATTCTCAAGCTTCAATCTTTCCATGAGGAAAATATTCAACTTGAACCTGTAAGCAAGGACCTTTTTAATAGGTCAGCCACCATAGAGGAAGGTGCAAGTAGAATCCAGTTTCCAGGTCAGGAAAGTGCAGAGGTGCAGCTTGGCTCTTCAATCATGGGAAACATTGATGGGAAATTTGACAGTGAATATATGGTTACTGTCAACTTGGGTTCTGACGAACTGCAAGGTGTCTTGTATCATGCTCTTACAGCTTCGTATGTTTCTCATATGGTACTAAAAGGTGTCTTGGATCTACGATACAACTTTCATGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ARID HMG_box

Protein Analysis

111

Amino Acids

12.29

Weight (kDa)

5.02

Isoelectric Point (pI)

56.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13350
fragaria_vesca	FvH4_3g41610
malus_domestica	MD03G1042900.v1.1 MD11G1045900.v1.1 MD13G1138800.v1.1
prunus_persica	Prupe.6G035300_v2.0.a1 Prupe.6G035300_v2.0.a1
pyrus_communis	pycom02g14660 pycom03g03310 pycom11g03720
rosa_chinensis	RchiOBHm_Chr5g0074651
rosa_laevigata	RLG00000036494
rosa_multiflora	Rmu_sc0000909.1_g000033 Rmu_sc0008028.1_g000006
rosa_roxburghii	Rroxscaffold_1G00006890
rosa_rugosa	Rorug05G0433500
rosa_samantha	Rh5AG490500 Rh5BG511600 Rh5CG535400 Rh5DG524000
rosa_wichuraiana	Rw5G045430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	315
AcsI	RAATTY	1 cut(s)	191
AfaI	GTAC	1 cut(s)	291
AgsI	TTSAA	4 cut(s)	32, 56, 62, 168
AjnI	CCWGG	1 cut(s)	130
AluBI	AGCT	3 cut(s)	28, 157, 269
AluI	AGCT	3 cut(s)	28, 157, 269
AlwI	GGATC	1 cut(s)	315
ApeKI	GCWGC	1 cut(s)	154
ApoI	RAATTY	1 cut(s)	191
Asp700I	GAANNNNTTC	1 cut(s)	51
AspS9I	GGNCC	1 cut(s)	76
AvaII	GGWCC	1 cut(s)	76
BbvI	GCAGC	1 cut(s)	166
BccI	CCATC	1 cut(s)	179
BciT130I	CCWGG	1 cut(s)	132
BfaI	CTAG	1 cut(s)	331
BisI	GCNGC	1 cut(s)	155
BlsI	GCNGC	1 cut(s)	156
Bme1390I	CCNGG	1 cut(s)	132
Bme18I	GGWCC	1 cut(s)	76
BmgT120I	GGNCC	1 cut(s)	76
BmrFI	CCNGG	1 cut(s)	132
BpuEI	CTTGAG	1 cut(s)	8
Bse1I	ACTGG	1 cut(s)	124
BseBI	CCWGG	1 cut(s)	132
BseNI	ACTGG	1 cut(s)	124
BseXI	GCAGC	1 cut(s)	166
BsgI	GTGCAG	2 cut(s)	165, 173
Bsp143I	GATC	1 cut(s)	307
BspPI	GGATC	1 cut(s)	315
BspQI	GCTCTTC	1 cut(s)	169
BsrI	ACTGG	1 cut(s)	124
BssMI	GATC	1 cut(s)	307
Bst2UI	CCWGG	1 cut(s)	132
Bst4CI	ACNGT	2 cut(s)	200, 217
Bst6I	CTCTTC	1 cut(s)	169
BstKTI	GATC	1 cut(s)	310
BstMBI	GATC	1 cut(s)	307
BstMWI	GCNNNNNNNGC	1 cut(s)	266
BstNI	CCWGG	1 cut(s)	132
BstSCI	CCNGG	1 cut(s)	130
BstV1I	GCAGC	1 cut(s)	166
BstX2I	RGATCY	1 cut(s)	307
BstYI	RGATCY	1 cut(s)	307
BtsIMutI	CAGTG	1 cut(s)	205
Cfr13I	GGNCC	1 cut(s)	76
Csp6I	GTAC	1 cut(s)	290
CviAII	CATG	4 cut(s)	41, 172, 257, 326
CviJI	RGCY	5 cut(s)	28, 95, 157, 162, 269
CviKI_1	RGCY	5 cut(s)	28, 95, 157, 162, 269
CviQI	GTAC	1 cut(s)	290
DpnI	GATC	1 cut(s)	309
DpnII	GATC	1 cut(s)	307
Eam1104I	CTCTTC	1 cut(s)	169
EarI	CTCTTC	1 cut(s)	169
Eco47I	GGWCC	1 cut(s)	76
EcoO109I	RGGNCCY	1 cut(s)	76
EcoRII	CCWGG	1 cut(s)	130
FaeI	CATG	4 cut(s)	44, 175, 260, 329
FatI	CATG	4 cut(s)	40, 171, 256, 325
FauNDI	CATATG	1 cut(s)	285
Fnu4HI	GCNGC	1 cut(s)	155
Fsp4HI	GCNGC	1 cut(s)	155
FspBI	CTAG	1 cut(s)	331
GluI	GCNGC	1 cut(s)	155
Hin1II	CATG	4 cut(s)	44, 175, 260, 329
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HindIII	AAGCTT	1 cut(s)	26
HinfI	GANTC	2 cut(s)	10, 120
Hpy166II	GTNNAC	1 cut(s)	220
Hpy188I	TCNGA	1 cut(s)	232
Hpy188III	TCNNGA	1 cut(s)	137
Hpy8I	GTNNAC	1 cut(s)	220
HpyAV	CCTTC	1 cut(s)	101
HpyCH4III	ACNGT	2 cut(s)	200, 217
HpyCH4V	TGCA	4 cut(s)	113, 146, 154, 241
HpyF10VI	GCNNNNNNNGC	1 cut(s)	266
Hsp92II	CATG	4 cut(s)	44, 175, 260, 329
Kzo9I	GATC	1 cut(s)	307
LguI	GCTCTTC	1 cut(s)	169
LpnPI	CCDG	5 cut(s)	78, 117, 122, 137, 144
Lsp1109I	GCAGC	1 cut(s)	166
MaeI	CTAG	1 cut(s)	331
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	1 cut(s)	309
MboI	GATC	1 cut(s)	307
MboII	GAAGA	1 cut(s)	156
MflI	RGATCY	1 cut(s)	307
MluCI	AATT	1 cut(s)	191
MnlI	CCTC	3 cut(s)	37, 97, 142
MroXI	GAANNNNTTC	1 cut(s)	51
MseI	TTAA	1 cut(s)	84
MspR9I	CCNGG	1 cut(s)	132
MvaI	CCWGG	1 cut(s)	132
MwoI	GCNNNNNNNGC	1 cut(s)	266
NdeI	CATATG	1 cut(s)	285
NdeII	GATC	1 cut(s)	307
NlaIII	CATG	4 cut(s)	44, 175, 260, 329
PciSI	GCTCTTC	1 cut(s)	169
PdmI	GAANNNNTTC	1 cut(s)	51
PfeI	GAWTC	2 cut(s)	10, 120
PkrI	GCNGC	1 cut(s)	156
PpuMI	RGGWCCY	1 cut(s)	76
Psp5II	RGGWCCY	1 cut(s)	76
Psp6I	CCWGG	1 cut(s)	130
PspGI	CCWGG	1 cut(s)	130
PspPI	GGNCC	1 cut(s)	76
PspPPI	RGGWCCY	1 cut(s)	76
PsuI	RGATCY	1 cut(s)	307
RsaI	GTAC	1 cut(s)	291
RsaNI	GTAC	1 cut(s)	290
SapI	GCTCTTC	1 cut(s)	169
SaqAI	TTAA	1 cut(s)	84
SatI	GCNGC	1 cut(s)	155
Sau3AI	GATC	1 cut(s)	307
Sau96I	GGNCC	1 cut(s)	76
ScrFI	CCNGG	1 cut(s)	132
SinI	GGWCC	1 cut(s)	76
SmlI	CTYRAG	1 cut(s)	23
SmoI	CTYRAG	1 cut(s)	23
Sse9I	AATT	1 cut(s)	191
SspI	AATATT	1 cut(s)	52
SspMI	CTAG	1 cut(s)	331
StyD4I	CCNGG	1 cut(s)	130
TaaI	ACNGT	2 cut(s)	200, 217
TaqI	TCGA	1 cut(s)	8
TasI	AATT	1 cut(s)	191
TfiI	GAWTC	2 cut(s)	10, 120
Tru1I	TTAA	1 cut(s)	84
Tru9I	TTAA	1 cut(s)	84
TscAI	CASTG	1 cut(s)	205
TseI	GCWGC	1 cut(s)	154
TspDTI	ATGAA	2 cut(s)	17, 314
TspRI	CASTG	1 cut(s)	205
VpaK11BI	GGWCC	1 cut(s)	76
XapI	RAATTY	1 cut(s)	191
XmnI	GAANNNNTTC	1 cut(s)	51
XspI	CTAG	1 cut(s)	331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.