Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000909.1

Orthogroup ID

OG0010334

Physical Location & Seq

Genomic Coordinates Forward (+)

125621 .. 130317

Gene Structure 4697 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000909.1_g000033.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

atgcaggtgaagtggttacgagaaccaattatggcatttggtggaggttctcttagtttgctactgctgggacggcggcggtggtgcgttggcgaggtggtcaccaggtgtttaacggcagcagcaactacgatagctgtcagtggtggtggcgatgacgtatggtgtcgcggtattgatgtttgctcgttatcagggttctgggctggtcccttgtggctgggcctttggtgtttgggcttccctttggcccaggtctttcggtcatttgagttgggaaaggaggcttctttggctattgttccagcttcacaacaccaagtgctcactcacagcgctaatgggtcttcttcatccctcacctctacttcaaaggtgtaccctccagcctcggccaagtttgaggatgtggttcaaagctcggaccttttctggcaaaagctcaaggagtttcacgattccctaggaaccaaaaaattcatgattcctactgttggaggaaaagctctggatatgcatctcctttttgtagaagtcacatctcgtggtggcattgaaaaggtgattagagatcgccaatggaaagaagtgattatggtcttcaatttcccaacaactattaccagtgcatcatttgtcttacggaagtactacttgtctttgctctatgactttgagcaggtctattatttccataaagaagttattagaatcccagtgcatgatccagaaggcaggagccttgacaatggatcagcacgggagcaaggtaccatccggtttcaaggtcaggccaccccgatagtaatgcaactgggcggttccattatgggaaccattgacagaaaatgtgaggagggatatgttattactgtaaacttgggttctgaggtgctgactggtatcttgtaccatcatcctgtggctgggtctcagaatttttctgagatgcctactcaacggaaccgaaagagatctaggttggcgacacgtgatccctctcggcccaagtccaacaggagtggctataatttcttcttcgctgagcactatgccagcttaaagcctttgtattatggccaagagagagccattagtaagcaaattgggtatctatggaacaatcttacagaagatgagaaacaggtttatcaggaaaaggggttgcaggacaaggagcgatacaagtccgagatgatggaatatagagcacagcaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ARID HMG_box

Protein Analysis

406

Amino Acids

45.85

Weight (kDa)

9.05

Isoelectric Point (pI)

43.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13350
fragaria_vesca	FvH4_3g41610
malus_domestica	MD03G1042900.v1.1 MD11G1045900.v1.1 MD13G1138800.v1.1
prunus_persica	Prupe.6G035300_v2.0.a1 Prupe.6G035300_v2.0.a1
pyrus_communis	pycom02g14660 pycom03g03310 pycom11g03720
rosa_chinensis	RchiOBHm_Chr5g0074651
rosa_laevigata	RLG00000036494
rosa_multiflora	Rmu_sc0000909.1_g000033 Rmu_sc0008028.1_g000006
rosa_roxburghii	Rroxscaffold_1G00006890
rosa_rugosa	Rorug05G0433500
rosa_samantha	Rh5AG490500 Rh5BG511600 Rh5CG535400 Rh5DG524000
rosa_wichuraiana	Rw5G045430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	670
Acc65I	GGTACC	1 cut(s)	770
AccB1I	GGYRCC	1 cut(s)	770
AccII	CGCG	1 cut(s)	171
AciI	CCGC	4 cut(s)	76, 79, 171, 819
AclWI	GGATC	3 cut(s)	719, 760, 989
AcoI	YGGCCR	2 cut(s)	393, 1078
AcsI	RAATTY	2 cut(s)	476, 937
AcvI	CACGTG	1 cut(s)	992
AdeI	CACNNNGTG	2 cut(s)	108, 322
AfaI	GTAC	4 cut(s)	380, 650, 772, 911
AfeI	AGCGCT	1 cut(s)	337
AfiI	CCNNNNNNNGG	2 cut(s)	494, 926
AflIII	ACRYGT	1 cut(s)	989
AgsI	TTSAA	5 cut(s)	372, 416, 557, 604, 785
AjnI	CCWGG	2 cut(s)	104, 252
AluBI	AGCT	6 cut(s)	137, 308, 420, 442, 506, 1059
AluI	AGCT	6 cut(s)	137, 308, 420, 442, 506, 1059
Alw21I	GWGCWC	3 cut(s)	327, 1050, 1213
Alw26I	GTCTC	1 cut(s)	936
AlwI	GGATC	3 cut(s)	719, 760, 989
Aor51HI	AGCGCT	1 cut(s)	337
AoxI	GGCC	6 cut(s)	223, 249, 393, 792, 1004, 1078
ApeKI	GCWGC	2 cut(s)	119, 122
ApoI	RAATTY	2 cut(s)	476, 937
Asp718I	GGTACC	1 cut(s)	770
AspA2I	CCTAGG	1 cut(s)	463
AspLEI	GCGC	1 cut(s)	338
AspS9I	GGNCC	5 cut(s)	209, 223, 250, 424, 1005
AsuHPI	GGTGA	4 cut(s)	19, 94, 352, 574
AvaII	GGWCC	2 cut(s)	209, 424
AvrII	CCTAGG	1 cut(s)	463
BalI	TGGCCA	1 cut(s)	1080
BanI	GGYRCC	1 cut(s)	770
BauI	CACGAG	1 cut(s)	543
BbrPI	CACGTG	1 cut(s)	992
BbsI	GAAGAC	2 cut(s)	339, 592
Bbv12I	GWGCWC	3 cut(s)	327, 1050, 1213
BbvI	GCAGC	2 cut(s)	131, 134
BccI	CCATC	3 cut(s)	782, 921, 1192
BceAI	ACGGC	2 cut(s)	89, 132
BcgI	CGANNNNNNTGC	2 cut(s)	790, 824
BciT130I	CCWGG	2 cut(s)	106, 254
BcoDI	GTCTC	1 cut(s)	936
BfaI	CTAG	2 cut(s)	464, 978
BfoI	RGCGCY	1 cut(s)	339
BfuAI	ACCTGC	1 cut(s)	670
BglII	AGATCT	1 cut(s)	974
BisI	GCNGC	3 cut(s)	77, 120, 123
BlnI	CCTAGG	1 cut(s)	463
BlpI	GCTNAGC	1 cut(s)	1044
BlsI	GCNGC	3 cut(s)	78, 121, 124
BmcAI	AGTACT	1 cut(s)	650
Bme1390I	CCNGG	2 cut(s)	106, 254
Bme18I	GGWCC	2 cut(s)	209, 424
BmgT120I	GGNCC	5 cut(s)	209, 223, 250, 424, 1005
BmiI	GGNNCC	7 cut(s)	211, 469, 740, 772, 823, 835, 965
BmrFI	CCNGG	2 cut(s)	106, 254
BmrI	ACTGGG	2 cut(s)	710, 824
BmsI	GCATC	3 cut(s)	526, 638, 939
BmuI	ACTGGG	2 cut(s)	710, 824
BpiI	GAAGAC	2 cut(s)	339, 592
BpmI	CTGGAG	1 cut(s)	369
Bpu1102I	GCTNAGC	1 cut(s)	1044
BpuEI	CTTGAG	1 cut(s)	428
BsaAI	YACGTR	1 cut(s)	992
BsaBI	GATNNNNATC	1 cut(s)	516
BsaI	GGTCTC	1 cut(s)	936
BsaJI	CCNNGG	3 cut(s)	252, 390, 463
BsaWI	WCCGGW	1 cut(s)	777
Bsc4I	CCNNNNNNNGG	2 cut(s)	494, 926
Bse1I	ACTGG	4 cut(s)	624, 716, 819, 904
Bse8I	GATNNNNATC	1 cut(s)	516
BseBI	CCWGG	2 cut(s)	106, 254
BseDI	CCNNGG	3 cut(s)	252, 390, 463
BseGI	GGATG	4 cut(s)	353, 412, 774, 916
BseJI	GATNNNNATC	1 cut(s)	516
BseLI	CCNNNNNNNGG	2 cut(s)	494, 926
BseMII	CTCAG	4 cut(s)	879, 936, 947, 1035
BseNI	ACTGG	4 cut(s)	624, 716, 819, 904
BseRI	GAGGAG	1 cut(s)	869
BseXI	GCAGC	2 cut(s)	131, 134
BseYI	CCCAGC	3 cut(s)	67, 220, 926
Bsh1236I	CGCG	1 cut(s)	171
BshFI	GGCC	6 cut(s)	225, 251, 395, 794, 1006, 1080
BshNI	GGYRCC	1 cut(s)	770
BsiHKAI	GWGCWC	3 cut(s)	327, 1050, 1213
BsiSI	CCGG	1 cut(s)	778
BslFI	GGGAC	2 cut(s)	84, 195
BslI	CCNNNNNNNGG	2 cut(s)	494, 926
BsmAI	GTCTC	1 cut(s)	936
BsmFI	GGGAC	2 cut(s)	84, 195
BsnI	GGCC	6 cut(s)	225, 251, 395, 794, 1006, 1080
Bso31I	GGTCTC	1 cut(s)	936
Bsp1286I	GDGCHC	3 cut(s)	327, 1050, 1213
Bsp143I	GATC	5 cut(s)	571, 724, 752, 974, 994
Bsp1720I	GCTNAGC	1 cut(s)	1044
BspACI	CCGC	4 cut(s)	76, 79, 171, 819
BspANI	GGCC	6 cut(s)	225, 251, 395, 794, 1006, 1080
BspCNI	CTCAG	4 cut(s)	880, 937, 946, 1036
BspFNI	CGCG	1 cut(s)	171
BspHI	TCATGA	1 cut(s)	480
BspLI	GGNNCC	7 cut(s)	211, 469, 740, 772, 823, 835, 965
BspMI	ACCTGC	1 cut(s)	670
BspPI	GGATC	3 cut(s)	719, 760, 989
BspT107I	GGYRCC	1 cut(s)	770
BspTNI	GGTCTC	1 cut(s)	936
BsrI	ACTGG	4 cut(s)	624, 716, 819, 904
BssECI	CCNNGG	3 cut(s)	252, 390, 463
BssMI	GATC	5 cut(s)	571, 724, 752, 974, 994
BssSI	CACGAG	1 cut(s)	543
BssT1I	CCWWGG	1 cut(s)	463
Bst2BI	CACGAG	1 cut(s)	543
Bst2UI	CCWGG	2 cut(s)	106, 254
Bst4CI	ACNGT	2 cut(s)	493, 874
BstBAI	YACGTR	1 cut(s)	992
BstC8I	GCNNGC	1 cut(s)	1057
BstDEI	CTNAG	5 cut(s)	53, 888, 933, 945, 1044
BstEII	GGTNACC	1 cut(s)	100
BstF5I	GGATG	4 cut(s)	353, 412, 774, 916
BstFNI	CGCG	1 cut(s)	171
BstH2I	RGCGCY	1 cut(s)	339
BstHHI	GCGC	1 cut(s)	338
BstKTI	GATC	5 cut(s)	574, 727, 755, 977, 997
BstMAI	GTCTC	1 cut(s)	936
BstMBI	GATC	5 cut(s)	571, 724, 752, 974, 994
BstMWI	GCNNNNNNNGC	2 cut(s)	73, 293
BstNI	CCWGG	2 cut(s)	106, 254
BstPI	GGTNACC	1 cut(s)	100
BstSCI	CCNGG	2 cut(s)	104, 252
BstUI	CGCG	1 cut(s)	171
BstV1I	GCAGC	2 cut(s)	131, 134
BstV2I	GAAGAC	2 cut(s)	339, 592
BstX2I	RGATCY	1 cut(s)	974
BstYI	RGATCY	1 cut(s)	974
BsuRI	GGCC	6 cut(s)	225, 251, 395, 794, 1006, 1080
BtgZI	GCGATG	1 cut(s)	168
BtsCI	GGATG	4 cut(s)	353, 412, 774, 916
BtsIMutI	CAGTG	3 cut(s)	148, 631, 723
BveI	ACCTGC	1 cut(s)	670
Cac8I	GCNNGC	1 cut(s)	1057
CciI	TCATGA	1 cut(s)	480
CfoI	GCGC	1 cut(s)	338
Cfr13I	GGNCC	5 cut(s)	209, 223, 250, 424, 1005
CsiI	ACCWGGT	1 cut(s)	104
Csp6I	GTAC	4 cut(s)	379, 649, 771, 910
CspCI	CAANNNNNGTGG	2 cut(s)	1003, 1038
CviAII	CATG	2 cut(s)	481, 722
CviQI	GTAC	4 cut(s)	379, 649, 771, 910
DdeI	CTNAG	5 cut(s)	53, 888, 933, 945, 1044
DpnI	GATC	5 cut(s)	573, 726, 754, 976, 996
DpnII	GATC	5 cut(s)	571, 724, 752, 974, 994
DraIII	CACNNNGTG	2 cut(s)	108, 322
EaeI	YGGCCR	2 cut(s)	393, 1078
Eco130I	CCWWGG	1 cut(s)	463
Eco31I	GGTCTC	1 cut(s)	936
Eco47I	GGWCC	2 cut(s)	209, 424
Eco47III	AGCGCT	1 cut(s)	337
Eco72I	CACGTG	1 cut(s)	992
Eco91I	GGTNACC	1 cut(s)	100
EcoO65I	GGTNACC	1 cut(s)	100
EcoRII	CCWGG	2 cut(s)	104, 252
EcoT14I	CCWWGG	1 cut(s)	463
EcoT22I	ATGCAT	1 cut(s)	519
ErhI	CCWWGG	1 cut(s)	463
FaeI	CATG	2 cut(s)	484, 725
FalI	AAGNNNNNCTT	2 cut(s)	638, 670
FaqI	GGGAC	2 cut(s)	84, 195
FatI	CATG	2 cut(s)	480, 721
Fnu4HI	GCNGC	3 cut(s)	77, 120, 123
FokI	GGATG	4 cut(s)	340, 419, 761, 903
Fsp4HI	GCNGC	3 cut(s)	77, 120, 123
FspBI	CTAG	2 cut(s)	464, 978
GlaI	GCGC	1 cut(s)	337
GluI	GCNGC	3 cut(s)	77, 120, 123
GsaI	CCCAGC	3 cut(s)	71, 224, 930
GsuI	CTGGAG	1 cut(s)	369
HaeII	RGCGCY	1 cut(s)	339
HaeIII	GGCC	6 cut(s)	225, 251, 395, 794, 1006, 1080
HapII	CCGG	1 cut(s)	778
HhaI	GCGC	1 cut(s)	338
Hin1II	CATG	2 cut(s)	484, 725
Hin6I	GCGC	1 cut(s)	336
HinP1I	GCGC	1 cut(s)	336
HinfI	GANTC	3 cut(s)	458, 484, 711
HpaII	CCGG	1 cut(s)	778
HphI	GGTGA	4 cut(s)	19, 94, 352, 574
Hpy166II	GTNNAC	2 cut(s)	379, 877
Hpy188I	TCNGA	5 cut(s)	424, 889, 936, 946, 1192
Hpy188III	TCNNGA	5 cut(s)	455, 481, 509, 728, 1154
Hpy8I	GTNNAC	2 cut(s)	379, 877
HpyAV	CCTTC	1 cut(s)	725
HpyCH4III	ACNGT	2 cut(s)	493, 874
HpyCH4IV	ACGT	2 cut(s)	159, 991
HpyCH4V	TGCA	6 cut(s)	4, 517, 629, 721, 811, 1168
HpyF10VI	GCNNNNNNNGC	2 cut(s)	73, 293
HpyF3I	CTNAG	5 cut(s)	53, 888, 933, 945, 1044
HpySE526I	ACGT	2 cut(s)	159, 991
Hsp92II	CATG	2 cut(s)	484, 725
HspAI	GCGC	1 cut(s)	336
KpnI	GGTACC	1 cut(s)	774
Kzo9I	GATC	5 cut(s)	571, 724, 752, 974, 994
LmnI	GCTCC	3 cut(s)	738, 763, 1177
Lsp1109I	GCAGC	2 cut(s)	131, 134
LweI	GCATC	3 cut(s)	526, 638, 939
MabI	ACCWGGT	1 cut(s)	104
MaeI	CTAG	2 cut(s)	464, 978
MaeII	ACGT	2 cut(s)	159, 991
MaeIII	GTNAC	3 cut(s)	15, 100, 535
MalI	GATC	5 cut(s)	573, 726, 754, 976, 996
MboI	GATC	5 cut(s)	571, 724, 752, 974, 994
MboII	GAAGA	6 cut(s)	339, 342, 592, 1027, 1030, 1145
MflI	RGATCY	1 cut(s)	974
MhlI	GDGCHC	3 cut(s)	327, 1050, 1213
MlsI	TGGCCA	1 cut(s)	1080
MluCI	AATT	6 cut(s)	27, 476, 604, 937, 1030, 1104
MluNI	TGGCCA	1 cut(s)	1080
MmeI	TCCRAC	2 cut(s)	475, 1038
Mox20I	TGGCCA	1 cut(s)	1080
Mph1103I	ATGCAT	1 cut(s)	519
MscI	TGGCCA	1 cut(s)	1080
MseI	TTAA	2 cut(s)	113, 1061
Msp20I	TGGCCA	1 cut(s)	1080
MspI	CCGG	1 cut(s)	778
MspR9I	CCNGG	2 cut(s)	106, 254
MvaI	CCWGG	2 cut(s)	106, 254
MvnI	CGCG	1 cut(s)	171
MwoI	GCNNNNNNNGC	2 cut(s)	73, 293
NdeII	GATC	5 cut(s)	571, 724, 752, 974, 994
NlaIII	CATG	2 cut(s)	484, 725
NlaIV	GGNNCC	7 cut(s)	211, 469, 740, 772, 823, 835, 965
NmeAIII	GCCGAG	2 cut(s)	371, 982
NmuCI	GTSAC	2 cut(s)	100, 535
NsiI	ATGCAT	1 cut(s)	519
PagI	TCATGA	1 cut(s)	480
PfeI	GAWTC	3 cut(s)	458, 484, 711
PkrI	GCNGC	3 cut(s)	78, 121, 124
PmaCI	CACGTG	1 cut(s)	992
PmlI	CACGTG	1 cut(s)	992
Ppu21I	YACGTR	1 cut(s)	992
Psp6I	CCWGG	2 cut(s)	104, 252
PspCI	CACGTG	1 cut(s)	992
PspEI	GGTNACC	1 cut(s)	100
PspFI	CCCAGC	3 cut(s)	67, 220, 926
PspGI	CCWGG	2 cut(s)	104, 252
PspN4I	GGNNCC	7 cut(s)	211, 469, 740, 772, 823, 835, 965
PspPI	GGNCC	5 cut(s)	209, 223, 250, 424, 1005
PsuI	RGATCY	1 cut(s)	974
RsaI	GTAC	4 cut(s)	380, 650, 772, 911
RsaNI	GTAC	4 cut(s)	379, 649, 771, 910
SaqAI	TTAA	2 cut(s)	113, 1061
SatI	GCNGC	3 cut(s)	77, 120, 123
Sau3AI	GATC	5 cut(s)	571, 724, 752, 974, 994
Sau96I	GGNCC	5 cut(s)	209, 223, 250, 424, 1005
ScaI	AGTACT	1 cut(s)	650
ScrFI	CCNGG	2 cut(s)	106, 254
SduI	GDGCHC	3 cut(s)	327, 1050, 1213
SexAI	ACCWGGT	1 cut(s)	104
SfaNI	GCATC	3 cut(s)	526, 638, 939
SinI	GGWCC	2 cut(s)	209, 424
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
Sse9I	AATT	6 cut(s)	27, 476, 604, 937, 1030, 1104
SsiI	CCGC	4 cut(s)	76, 79, 171, 819
SspMI	CTAG	2 cut(s)	464, 978
StyD4I	CCNGG	2 cut(s)	104, 252
StyI	CCWWGG	1 cut(s)	463
TaaI	ACNGT	2 cut(s)	493, 874
TaiI	ACGT	2 cut(s)	162, 994
TaqII	GACCGA	1 cut(s)	252
TasI	AATT	6 cut(s)	27, 476, 604, 937, 1030, 1104
TatI	WGTACW	1 cut(s)	648
TauI	GCSGC	1 cut(s)	79
TfiI	GAWTC	3 cut(s)	458, 484, 711
Tru1I	TTAA	2 cut(s)	113, 1061
Tru9I	TTAA	2 cut(s)	113, 1061
TscAI	CASTG	3 cut(s)	148, 631, 723
TseFI	GTSAC	2 cut(s)	100, 535
TseI	GCWGC	2 cut(s)	119, 122
Tsp45I	GTSAC	2 cut(s)	100, 535
TspDTI	ATGAA	2 cut(s)	342, 469
TspGWI	ACGGA	2 cut(s)	658, 976
TspRI	CASTG	3 cut(s)	148, 631, 723
VpaK11BI	GGWCC	2 cut(s)	209, 424
XapI	RAATTY	2 cut(s)	476, 937
XmaJI	CCTAGG	1 cut(s)	463
XspI	CTAG	2 cut(s)	464, 978
ZrmI	AGTACT	1 cut(s)	650
Zsp2I	ATGCAT	1 cut(s)	519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.