Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0010334

Physical Location & Seq

Genomic Coordinates Forward (+)

3996434 .. 3999637

Gene Structure 3204 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1045900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGTCTGAGGTCCCAACACCAAAAATTACAGAAAAGGAGAAGACTTCTTCTTCCTCTGCAGCCATTTCAGCTCACCAACAACAACTCCTCTCTCTCTCCGCCAATGGGTCTTCTGTCTCATCCCCCGCCTCCGCTCCAAAGGCTTATCCTTCACCCACAGCAAAGTATGAGGAAGTCGTTCAAAGCTCCGACCTTTTCTGGGAAAAGCTCAAGGAGTTTCACGATTCGTTCAGAACCAAATTCATGATTCCTACTGTCGGAGGAAAGTGTCTGGATCTACATCTCCTTTTTGTTGAAGTCACATCTCGTGGTGGGCTTGACAAGGTGATTAGAGATCGCAAATGGAAGGAAGTGATTGTGGCCTTCAATTTCCCAACAACAATTACCAGTGCTTCGTTTGTCTTACGGAAGTACTACTTGTCTTTGCTGTATCACTTTGAGCAGGCGTATTATCTCCATAAAGAAGTTTTTAGCATCCCAGTGCTTGAACCTGTAAGCAAGGACCTTTTCAATGGGTCAGCCACCATGGAGGAAGGTGCGAGTAGAAACCAGTTTCCAGAAAGTGCAGAAGTGCAGCTTGGCTCTTCAATCATGGGAACCATTGATGGGAAATTTGACAGTGGATATGTGGTTACTGTCAACTTGGGTTCTGACGAACTGAAAGGTGTCTTGTATCATGCTCCTACAGCTACATACGTTTCTCAGAGCTTTTCGGACATGCCTACTCGACGGAACAGAAAGAGATCCCGGTTGGCATTACGTGATCCCTCTCGGCCCAAGTCAAACAGGAGCGGTTACAATTTCTTCTTCGCTGAGCATTATGCTAGATTAAAGCCTTTGTACTATGGGCAAGAGAGAGCCATCAGCAAGAAAATTGGGTACCTATGGAACAATCTCACAGAGGCTGAGAAACAGGTTTATCAGGATAAAGGGACGAAAGACAAGGAGAGATACAGGACTGAAATGCTGGAATATAAGTCTTCCTACAATCCTACACAGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ARID HMG_box

Protein Analysis

335

Amino Acids

37.93

Weight (kDa)

9.21

Isoelectric Point (pI)

45.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARID	PF01388	63 - 147	2.5e-21	ARID/BRIGHT DNA binding domain
HMG_box_2	PF09011	256 - 325	2e-09	HMG-box domain
HMG_box	PF00505	259 - 326	1.2e-10	HMG (high mobility group) box

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13350
fragaria_vesca	FvH4_3g41610
malus_domestica	MD03G1042900.v1.1 MD11G1045900.v1.1 MD13G1138800.v1.1
prunus_persica	Prupe.6G035300_v2.0.a1 Prupe.6G035300_v2.0.a1
pyrus_communis	pycom02g14660 pycom03g03310 pycom11g03720
rosa_chinensis	RchiOBHm_Chr5g0074651
rosa_laevigata	RLG00000036494
rosa_multiflora	Rmu_sc0000909.1_g000033 Rmu_sc0008028.1_g000006
rosa_roxburghii	Rroxscaffold_1G00006890
rosa_rugosa	Rorug05G0433500
rosa_samantha	Rh5AG490500 Rh5BG511600 Rh5CG535400 Rh5DG524000
rosa_wichuraiana	Rw5G045430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	879
AccB1I	GGYRCC	1 cut(s)	879
AccBSI	CCGCTC	2 cut(s)	134, 792
AciI	CCGC	4 cut(s)	99, 126, 132, 792
AclWI	GGATC	3 cut(s)	282, 738, 758
AcsI	RAATTY	2 cut(s)	239, 611
AfaI	GTAC	3 cut(s)	413, 842, 881
AfiI	CCNNNNNNNGG	4 cut(s)	105, 199, 257, 606
AgsI	TTSAA	6 cut(s)	182, 296, 367, 488, 511, 588
AjuI	GAANNNNNNNTTGG	2 cut(s)	561, 593
AluBI	AGCT	6 cut(s)	71, 186, 208, 577, 689, 708
AluI	AGCT	6 cut(s)	71, 186, 208, 577, 689, 708
Alw26I	GTCTC	1 cut(s)	121
AlwI	GGATC	3 cut(s)	282, 738, 758
AlwNI	CAGNNNCTG	1 cut(s)	905
AoxI	GGCC	2 cut(s)	360, 773
ApeKI	GCWGC	2 cut(s)	59, 574
ApoI	RAATTY	2 cut(s)	239, 611
Asp700I	GAANNNNTTC	1 cut(s)	177
Asp718I	GGTACC	1 cut(s)	879
AspS9I	GGNCC	3 cut(s)	10, 502, 774
AsuC2I	CCSGG	1 cut(s)	748
AsuHPI	GGTGA	3 cut(s)	65, 144, 337
AvaII	GGWCC	2 cut(s)	10, 502
BanI	GGYRCC	1 cut(s)	879
BauI	CACGAG	1 cut(s)	306
BbsI	GAAGAC	3 cut(s)	47, 102, 972
BbvI	GCAGC	2 cut(s)	71, 586
BccI	CCATC	2 cut(s)	599, 869
BcnI	CCSGG	1 cut(s)	748
BcoDI	GTCTC	1 cut(s)	121
BfaI	CTAG	1 cut(s)	825
BfmI	CTRYAG	2 cut(s)	57, 684
BisI	GCNGC	2 cut(s)	60, 575
BlpI	GCTNAGC	1 cut(s)	813
BlsI	GCNGC	2 cut(s)	61, 576
BmcAI	AGTACT	1 cut(s)	413
Bme1390I	CCNGG	1 cut(s)	748
Bme18I	GGWCC	2 cut(s)	10, 502
BmgT120I	GGNCC	3 cut(s)	10, 502, 774
BmiI	GGNNCC	3 cut(s)	12, 598, 881
BmrFI	CCNGG	1 cut(s)	748
BmrI	ACTGGG	1 cut(s)	473
BmsI	GCATC	1 cut(s)	483
BmuI	ACTGGG	1 cut(s)	473
BpiI	GAAGAC	3 cut(s)	47, 102, 972
Bpu1102I	GCTNAGC	1 cut(s)	813
BpuEI	CTTGAG	1 cut(s)	194
BpuMI	CCSGG	1 cut(s)	748
BsaAI	YACGTR	1 cut(s)	761
BsaBI	GATNNNNATC	1 cut(s)	279
BsaJI	CCNNGG	1 cut(s)	525
BsaXI	ACNNNNNCTCC	2 cut(s)	69, 99
Bsc4I	CCNNNNNNNGG	4 cut(s)	105, 199, 257, 606
Bse1I	ACTGG	3 cut(s)	387, 479, 550
Bse8I	GATNNNNATC	1 cut(s)	279
BseDI	CCNNGG	1 cut(s)	525
BseGI	GGATG	2 cut(s)	119, 474
BseJI	GATNNNNATC	1 cut(s)	279
BseLI	CCNNNNNNNGG	4 cut(s)	105, 199, 257, 606
BseMII	CTCAG	3 cut(s)	716, 804, 897
BseNI	ACTGG	3 cut(s)	387, 479, 550
BseRI	GAGGAG	1 cut(s)	77
BseXI	GCAGC	2 cut(s)	71, 586
BsgI	GTGCAG	2 cut(s)	585, 593
BshFI	GGCC	2 cut(s)	362, 775
BshNI	GGYRCC	1 cut(s)	879
BsiSI	CCGG	1 cut(s)	748
BslFI	GGGAC	1 cut(s)	946
BslI	CCNNNNNNNGG	4 cut(s)	105, 199, 257, 606
BsmAI	GTCTC	1 cut(s)	121
BsmFI	GGGAC	1 cut(s)	946
BsnI	GGCC	2 cut(s)	362, 775
Bsp143I	GATC	4 cut(s)	274, 334, 743, 763
Bsp1720I	GCTNAGC	1 cut(s)	813
Bsp19I	CCATGG	1 cut(s)	525
BspACI	CCGC	4 cut(s)	99, 126, 132, 792
BspANI	GGCC	2 cut(s)	362, 775
BspCNI	CTCAG	3 cut(s)	715, 805, 898
BspHI	TCATGA	1 cut(s)	243
BspLI	GGNNCC	3 cut(s)	12, 598, 881
BspMAI	CTGCAG	1 cut(s)	61
BspPI	GGATC	3 cut(s)	282, 738, 758
BspQI	GCTCTTC	1 cut(s)	589
BspT107I	GGYRCC	1 cut(s)	879
BsrBI	CCGCTC	2 cut(s)	134, 792
BsrI	ACTGG	3 cut(s)	387, 479, 550
BssECI	CCNNGG	1 cut(s)	525
BssMI	GATC	4 cut(s)	274, 334, 743, 763
BssSI	CACGAG	1 cut(s)	306
BssT1I	CCWWGG	1 cut(s)	525
Bst2BI	CACGAG	1 cut(s)	306
Bst4CI	ACNGT	3 cut(s)	256, 620, 637
Bst6I	CTCTTC	1 cut(s)	589
BstBAI	YACGTR	1 cut(s)	761
BstC8I	GCNNGC	1 cut(s)	444
BstDEI	CTNAG	4 cut(s)	6, 702, 813, 906
BstDSI	CCRYGG	1 cut(s)	525
BstF5I	GGATG	2 cut(s)	119, 474
BstKTI	GATC	4 cut(s)	277, 337, 746, 766
BstMAI	GTCTC	1 cut(s)	121
BstMBI	GATC	4 cut(s)	274, 334, 743, 763
BstMWI	GCNNNNNNNGC	3 cut(s)	68, 140, 686
BstNSI	RCATGY	1 cut(s)	721
BstSCI	CCNGG	1 cut(s)	746
BstSFI	CTRYAG	2 cut(s)	57, 684
BstV1I	GCAGC	2 cut(s)	71, 586
BstV2I	GAAGAC	3 cut(s)	47, 102, 972
BstX2I	RGATCY	2 cut(s)	274, 743
BstYI	RGATCY	2 cut(s)	274, 743
BsuRI	GGCC	2 cut(s)	362, 775
BtgI	CCRYGG	1 cut(s)	525
BtsCI	GGATG	2 cut(s)	119, 474
BtsIMutI	CAGTG	3 cut(s)	394, 486, 625
Cac8I	GCNNGC	1 cut(s)	444
CaiI	CAGNNNCTG	1 cut(s)	905
CciI	TCATGA	1 cut(s)	243
Cfr13I	GGNCC	3 cut(s)	10, 502, 774
Csp6I	GTAC	3 cut(s)	412, 841, 880
CviAII	CATG	5 cut(s)	244, 526, 592, 677, 718
CviQI	GTAC	3 cut(s)	412, 841, 880
DdeI	CTNAG	4 cut(s)	6, 702, 813, 906
DpnI	GATC	4 cut(s)	276, 336, 745, 765
DpnII	GATC	4 cut(s)	274, 334, 743, 763
Eam1104I	CTCTTC	1 cut(s)	589
EarI	CTCTTC	1 cut(s)	589
EciI	GGCGGA	1 cut(s)	88
Eco130I	CCWWGG	1 cut(s)	525
Eco47I	GGWCC	2 cut(s)	10, 502
EcoO109I	RGGNCCY	2 cut(s)	10, 502
EcoT14I	CCWWGG	1 cut(s)	525
ErhI	CCWWGG	1 cut(s)	525
FaeI	CATG	5 cut(s)	247, 529, 595, 680, 721
FalI	AAGNNNNNCTT	4 cut(s)	401, 433, 561, 593
FaqI	GGGAC	1 cut(s)	946
FatI	CATG	5 cut(s)	243, 525, 591, 676, 717
FauI	CCCGC	1 cut(s)	133
Fnu4HI	GCNGC	2 cut(s)	60, 575
FokI	GGATG	2 cut(s)	106, 461
Fsp4HI	GCNGC	2 cut(s)	60, 575
FspBI	CTAG	1 cut(s)	825
GluI	GCNGC	2 cut(s)	60, 575
HaeIII	GGCC	2 cut(s)	362, 775
HapII	CCGG	1 cut(s)	748
Hin1II	CATG	5 cut(s)	247, 529, 595, 680, 721
HincII	GTYRAC	1 cut(s)	640
HindII	GTYRAC	1 cut(s)	640
HinfI	GANTC	2 cut(s)	224, 247
HpaII	CCGG	1 cut(s)	748
HphI	GGTGA	3 cut(s)	65, 144, 337
Hpy166II	GTNNAC	1 cut(s)	640
Hpy188I	TCNGA	7 cut(s)	7, 190, 233, 260, 652, 705, 715
Hpy188III	TCNNGA	5 cut(s)	221, 244, 272, 557, 923
Hpy8I	GTNNAC	1 cut(s)	640
Hpy99I	CGWCG	1 cut(s)	732
HpyAV	CCTTC	4 cut(s)	159, 340, 373, 527
HpyCH4III	ACNGT	3 cut(s)	256, 620, 637
HpyCH4IV	ACGT	2 cut(s)	696, 760
HpyCH4V	TGCA	3 cut(s)	59, 566, 574
HpyF10VI	GCNNNNNNNGC	3 cut(s)	68, 140, 686
HpyF3I	CTNAG	4 cut(s)	6, 702, 813, 906
HpySE526I	ACGT	2 cut(s)	696, 760
Hsp92II	CATG	5 cut(s)	247, 529, 595, 680, 721
KpnI	GGTACC	1 cut(s)	883
Kzo9I	GATC	4 cut(s)	274, 334, 743, 763
LguI	GCTCTTC	1 cut(s)	589
LmnI	GCTCC	4 cut(s)	139, 191, 685, 789
Lsp1109I	GCAGC	2 cut(s)	71, 586
LweI	GCATC	1 cut(s)	483
MaeI	CTAG	1 cut(s)	825
MaeII	ACGT	2 cut(s)	696, 760
MaeIII	GTNAC	3 cut(s)	298, 631, 794
MalI	GATC	4 cut(s)	276, 336, 745, 765
MbiI	CCGCTC	2 cut(s)	134, 792
MboI	GATC	4 cut(s)	274, 334, 743, 763
MboII	GAAGA	8 cut(s)	39, 42, 52, 102, 576, 796, 799, 972
MflI	RGATCY	2 cut(s)	274, 743
MluCI	AATT	7 cut(s)	24, 239, 367, 381, 611, 799, 873
MmeI	TCCRAC	2 cut(s)	213, 238
MnlI	CCTC	8 cut(s)	64, 98, 139, 163, 254, 523, 778, 895
MroXI	GAANNNNTTC	1 cut(s)	177
MseI	TTAA	1 cut(s)	830
MslI	CAYNNNNRTG	1 cut(s)	479
MspI	CCGG	1 cut(s)	748
MspR9I	CCNGG	1 cut(s)	748
MwoI	GCNNNNNNNGC	3 cut(s)	68, 140, 686
NciI	CCSGG	1 cut(s)	748
NcoI	CCATGG	1 cut(s)	525
NdeII	GATC	4 cut(s)	274, 334, 743, 763
NlaIII	CATG	5 cut(s)	247, 529, 595, 680, 721
NlaIV	GGNNCC	3 cut(s)	12, 598, 881
NmeAIII	GCCGAG	1 cut(s)	751
NmuCI	GTSAC	1 cut(s)	298
NspI	RCATGY	1 cut(s)	721
PagI	TCATGA	1 cut(s)	243
PciSI	GCTCTTC	1 cut(s)	589
PdmI	GAANNNNTTC	1 cut(s)	177
PfeI	GAWTC	2 cut(s)	224, 247
PkrI	GCNGC	2 cut(s)	61, 576
Ppu21I	YACGTR	1 cut(s)	761
PpuMI	RGGWCCY	2 cut(s)	10, 502
Psp5II	RGGWCCY	2 cut(s)	10, 502
PspN4I	GGNNCC	3 cut(s)	12, 598, 881
PspPI	GGNCC	3 cut(s)	10, 502, 774
PspPPI	RGGWCCY	2 cut(s)	10, 502
PstI	CTGCAG	1 cut(s)	61
PstNI	CAGNNNCTG	1 cut(s)	905
PsuI	RGATCY	2 cut(s)	274, 743
RsaI	GTAC	3 cut(s)	413, 842, 881
RsaNI	GTAC	3 cut(s)	412, 841, 880
RseI	CAYNNNNRTG	1 cut(s)	479
SapI	GCTCTTC	1 cut(s)	589
SaqAI	TTAA	1 cut(s)	830
SatI	GCNGC	2 cut(s)	60, 575
Sau3AI	GATC	4 cut(s)	274, 334, 743, 763
Sau96I	GGNCC	3 cut(s)	10, 502, 774
ScaI	AGTACT	1 cut(s)	413
ScrFI	CCNGG	1 cut(s)	748
SfaNI	GCATC	1 cut(s)	483
SfcI	CTRYAG	2 cut(s)	57, 684
SinI	GGWCC	2 cut(s)	10, 502
SmiMI	CAYNNNNRTG	1 cut(s)	479
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
Sse9I	AATT	7 cut(s)	24, 239, 367, 381, 611, 799, 873
SsiI	CCGC	4 cut(s)	99, 126, 132, 792
SspMI	CTAG	1 cut(s)	825
StyD4I	CCNGG	1 cut(s)	746
StyI	CCWWGG	1 cut(s)	525
TaaI	ACNGT	3 cut(s)	256, 620, 637
TaiI	ACGT	2 cut(s)	699, 763
TaqI	TCGA	1 cut(s)	727
TasI	AATT	7 cut(s)	24, 239, 367, 381, 611, 799, 873
TatI	WGTACW	2 cut(s)	411, 840
TfiI	GAWTC	2 cut(s)	224, 247
Tru1I	TTAA	1 cut(s)	830
Tru9I	TTAA	1 cut(s)	830
TscAI	CASTG	3 cut(s)	394, 486, 625
TseFI	GTSAC	1 cut(s)	298
TseI	GCWGC	2 cut(s)	59, 574
Tsp45I	GTSAC	1 cut(s)	298
TspDTI	ATGAA	1 cut(s)	232
TspGWI	ACGGA	2 cut(s)	421, 745
TspRI	CASTG	3 cut(s)	394, 486, 625
VpaK11BI	GGWCC	2 cut(s)	10, 502
XapI	RAATTY	2 cut(s)	239, 611
XceI	RCATGY	1 cut(s)	721
XmnI	GAANNNNTTC	1 cut(s)	177
XspI	CTAG	1 cut(s)	825
ZrmI	AGTACT	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.