AT3G13850

lob domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0011096
Physical Location & Seq
Forward (+)
4559619 .. 4561020
1402 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G13850.1

Sequence Viewer

Length: 807 bp
ATGCCCTCAGGCAAACCTTCTTCTGTCTTCCCTTTACATCCCAAACCTACACCATTAAAACCTTCTAGCAGCACCAGCAGCAGCAACAACAACAGCACAAACCAAGCCTGCGCCGCCTGCAAATACCAACGCAGGAAATGCGCTCCCGATTGTCTTCTTGCTCCTTATTTCCCTCACGACCGTCACCGCCAATTCCTTAACGCGCATAAGCTCTTTGGAGTCAGCAACATCACCAAGATCATTAAATCCCTTACCCCTCCAGAGAAAGACGCAGCTATGCATACAATCATGTTTCAGTCCGATGCTCGTGCCAATGATCCCGTTGATGGATGCTATGGCATCATAAAAAAGCTTCAATACCAGATCGAATACACAAGAAACGAATTGGAGATTGTTCTTCAGCAATTGGCTATGTTCCGTGACCGTGCTCATCAACATCATCATCAAGAACCGCATATCCAGATGCAAGAACAAGAGGATCTCTCGAGTTTTTCGAGTTCTTGTGATCTAAACAACAACAATTCGATTCCTTACAATTACCCTCTGAATCACATTCAAGAACCAAATCAACAACAATATTGTTCTTCCGGTAATAACTTCAGTGGGTTACAAGAAGACATGTGGTGTCTTCAACTTCAAGATTCATCAACGATAGTGAATATGAAGGCTGGTTTCATTGATGAATGTGAAGACGTAAAGCCTGTAGAAGAGGTTTCTAGCGAACGACACGAGTTTGAGCCTCATGAAGCTTTCGTTGAACAACGGAAACTCGACTTGCCTTCCGCACAATACATCATTTCTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

268

Amino Acids

30.57

Weight (kDa)

5.88

Isoelectric Point (pI)

64.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 36 - 131 9.2e-37 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 203
AciI CCGC 4 cut(s) 114, 187, 452, 783
AclWI GGATC 2 cut(s) 311, 486
AcuI CTGAAG 2 cut(s) 383, 583
AfiI CCNNNNNNNGG 1 cut(s) 326
AflIII ACRYGT 1 cut(s) 618
AgsI TTSAA 5 cut(s) 356, 557, 632, 638, 758
AloI GAACNNNNNNTCC 2 cut(s) 441, 473
AluBI AGCT 4 cut(s) 211, 275, 352, 749
AluI AGCT 4 cut(s) 211, 275, 352, 749
Alw21I GWGCWC 1 cut(s) 430
AlwI GGATC 2 cut(s) 311, 486
Ama87I CYCGRG 1 cut(s) 484
ApeKI GCWGC 4 cut(s) 69, 78, 81, 272
AspLEI GCGC 3 cut(s) 113, 143, 205
AsuHPI GGTGA 2 cut(s) 176, 223
AvaI CYCGRG 1 cut(s) 484
AxyI CCTNAGG 1 cut(s) 7
BauI CACGAG 2 cut(s) 306, 728
BbsI GAAGAC 5 cut(s) 19, 146, 620, 621, 696
Bbv12I GWGCWC 1 cut(s) 430
BbvI GCAGC 4 cut(s) 81, 90, 93, 284
BccI CCATC 1 cut(s) 320
BcgI CGANNNNNNTGC 2 cut(s) 290, 324
BfaI CTAG 2 cut(s) 66, 717
BfmI CTRYAG 1 cut(s) 702
BisI GCNGC 5 cut(s) 70, 79, 82, 114, 273
BlsI GCNGC 5 cut(s) 71, 80, 83, 115, 274
BmeT110I CYCGRG 1 cut(s) 484
BmsI GCATC 4 cut(s) 292, 320, 348, 453
BpiI GAAGAC 5 cut(s) 19, 146, 620, 621, 696
BplI GAGNNNNNCTC 2 cut(s) 467, 499
BpmI CTGGAG 1 cut(s) 243
BsaWI WCCGGW 1 cut(s) 587
Bsc4I CCNNNNNNNGG 1 cut(s) 326
Bse21I CCTNAGG 1 cut(s) 7
BseGI GGATG 2 cut(s) 37, 335
BseLI CCNNNNNNNGG 1 cut(s) 326
BseMII CTCAG 1 cut(s) 21
BseXI GCAGC 4 cut(s) 81, 90, 93, 284
Bsh1236I CGCG 1 cut(s) 203
Bsh1285I CGRYCG 1 cut(s) 181
BsiEI CGRYCG 1 cut(s) 181
BsiHKAI GWGCWC 1 cut(s) 430
BsiHKCI CYCGRG 1 cut(s) 484
BsiSI CCGG 1 cut(s) 588
BslI CCNNNNNNNGG 1 cut(s) 326
BsoBI CYCGRG 1 cut(s) 484
Bsp1286I GDGCHC 1 cut(s) 430
Bsp143I GATC 5 cut(s) 237, 316, 363, 478, 505
BspACI CCGC 4 cut(s) 114, 187, 452, 783
BspCNI CTCAG 1 cut(s) 20
BspFNI CGCG 1 cut(s) 203
BspHI TCATGA 1 cut(s) 742
BspPI GGATC 2 cut(s) 311, 486
BssMI GATC 5 cut(s) 237, 316, 363, 478, 505
BssSI CACGAG 2 cut(s) 306, 728
Bst2BI CACGAG 2 cut(s) 306, 728
Bst4CI ACNGT 2 cut(s) 182, 425
Bst6I CTCTTC 1 cut(s) 702
BstAPI GCANNNNNTGC 1 cut(s) 138
BstC8I GCNNGC 2 cut(s) 109, 118
BstDEI CTNAG 2 cut(s) 7, 804
BstF5I GGATG 2 cut(s) 37, 335
BstFNI CGCG 1 cut(s) 203
BstHHI GCGC 3 cut(s) 113, 143, 205
BstKTI GATC 5 cut(s) 240, 319, 366, 481, 508
BstMBI GATC 5 cut(s) 237, 316, 363, 478, 505
BstMCI CGRYCG 1 cut(s) 181
BstMWI GCNNNNNNNGC 5 cut(s) 75, 78, 113, 117, 138
BstNSI RCATGY 1 cut(s) 622
BstSFI CTRYAG 1 cut(s) 702
BstUI CGCG 1 cut(s) 203
BstV1I GCAGC 4 cut(s) 81, 90, 93, 284
BstV2I GAAGAC 5 cut(s) 19, 146, 620, 621, 696
BstX2I RGATCY 1 cut(s) 478
BstYI RGATCY 1 cut(s) 478
Bsu36I CCTNAGG 1 cut(s) 7
BtsCI GGATG 2 cut(s) 37, 335
BtsIMutI CAGTG 1 cut(s) 607
Cac8I GCNNGC 2 cut(s) 109, 118
CciI TCATGA 1 cut(s) 742
CfoI GCGC 3 cut(s) 113, 143, 205
CseI GACGC 1 cut(s) 278
CviAII CATG 3 cut(s) 289, 619, 743
CviJI RGCY 9 cut(s) 107, 211, 275, 352, 410, 668, 700, 739, 749
CviKI_1 RGCY 9 cut(s) 107, 211, 275, 352, 410, 668, 700, 739, 749
DdeI CTNAG 2 cut(s) 7, 804
DpnI GATC 5 cut(s) 239, 318, 365, 480, 507
DpnII GATC 5 cut(s) 237, 316, 363, 478, 505
Eam1104I CTCTTC 1 cut(s) 702
EarI CTCTTC 1 cut(s) 702
Eco57I CTGAAG 2 cut(s) 383, 583
Eco81I CCTNAGG 1 cut(s) 7
Eco88I CYCGRG 1 cut(s) 484
EcoT22I ATGCAT 1 cut(s) 282
FaeI CATG 3 cut(s) 292, 622, 746
FatI CATG 3 cut(s) 288, 618, 742
Fnu4HI GCNGC 5 cut(s) 70, 79, 82, 114, 273
FokI GGATG 2 cut(s) 24, 342
Fsp4HI GCNGC 5 cut(s) 70, 79, 82, 114, 273
FspBI CTAG 2 cut(s) 66, 717
GlaI GCGC 3 cut(s) 112, 142, 204
GluI GCNGC 5 cut(s) 70, 79, 82, 114, 273
GsuI CTGGAG 1 cut(s) 243
HapII CCGG 1 cut(s) 588
HgaI GACGC 1 cut(s) 278
HhaI GCGC 3 cut(s) 113, 143, 205
Hin1II CATG 3 cut(s) 292, 622, 746
Hin6I GCGC 3 cut(s) 111, 141, 203
HinP1I GCGC 3 cut(s) 111, 141, 203
HindIII AAGCTT 2 cut(s) 350, 747
HinfI GANTC 4 cut(s) 219, 526, 547, 641
HpaII CCGG 1 cut(s) 588
HphI GGTGA 2 cut(s) 176, 223
Hpy188I TCNGA 2 cut(s) 301, 546
Hpy188III TCNNGA 9 cut(s) 146, 176, 260, 446, 460, 484, 557, 638, 743
HpyAV CCTTC 4 cut(s) 27, 72, 658, 789
HpyCH4III ACNGT 2 cut(s) 182, 425
HpyCH4IV ACGT 1 cut(s) 693
HpyCH4V TGCA 3 cut(s) 120, 280, 466
HpyF10VI GCNNNNNNNGC 5 cut(s) 75, 78, 113, 117, 138
HpyF3I CTNAG 2 cut(s) 7, 804
HpySE526I ACGT 1 cut(s) 693
Hsp92II CATG 3 cut(s) 292, 622, 746
HspAI GCGC 3 cut(s) 111, 141, 203
Kzo9I GATC 5 cut(s) 237, 316, 363, 478, 505
LmnI GCTCC 2 cut(s) 148, 166
Lsp1109I GCAGC 4 cut(s) 81, 90, 93, 284
LweI GCATC 4 cut(s) 292, 320, 348, 453
MaeI CTAG 2 cut(s) 66, 717
MaeII ACGT 1 cut(s) 693
MaeIII GTNAC 3 cut(s) 182, 419, 606
MalI GATC 5 cut(s) 239, 318, 365, 480, 507
MboI GATC 5 cut(s) 237, 316, 363, 478, 505
MfeI CAATTG 1 cut(s) 404
MflI RGATCY 1 cut(s) 478
MhlI GDGCHC 1 cut(s) 430
MluCI AATT 5 cut(s) 191, 383, 404, 520, 535
MlyI GAGTC 1 cut(s) 228
MnlI CCTC 7 cut(s) 16, 183, 267, 469, 552, 703, 750
Mph1103I ATGCAT 1 cut(s) 282
MseI TTAA 3 cut(s) 56, 198, 243
MspI CCGG 1 cut(s) 588
MunI CAATTG 1 cut(s) 404
MvnI CGCG 1 cut(s) 203
MwoI GCNNNNNNNGC 5 cut(s) 75, 78, 113, 117, 138
NdeII GATC 5 cut(s) 237, 316, 363, 478, 505
NlaIII CATG 3 cut(s) 292, 622, 746
NmuCI GTSAC 2 cut(s) 182, 419
NsiI ATGCAT 1 cut(s) 282
NspI RCATGY 1 cut(s) 622
PaeR7I CTCGAG 1 cut(s) 484
PagI TCATGA 1 cut(s) 742
PciI ACATGT 1 cut(s) 618
PcsI WCGNNNNNNNCGW 1 cut(s) 491
PfeI GAWTC 3 cut(s) 526, 547, 641
PkrI GCNGC 5 cut(s) 71, 80, 83, 115, 274
PleI GAGTC 1 cut(s) 227
PpsI GAGTC 1 cut(s) 227
PscI ACATGT 1 cut(s) 618
PsuI RGATCY 1 cut(s) 478
SaqAI TTAA 3 cut(s) 56, 198, 243
SatI GCNGC 5 cut(s) 70, 79, 82, 114, 273
Sau3AI GATC 5 cut(s) 237, 316, 363, 478, 505
SchI GAGTC 1 cut(s) 228
SduI GDGCHC 1 cut(s) 430
SetI ASST 9 cut(s) 19, 49, 64, 213, 277, 354, 696, 714, 751
SfaNI GCATC 4 cut(s) 292, 320, 348, 453
SfcI CTRYAG 1 cut(s) 702
Sfr274I CTCGAG 1 cut(s) 484
SlaI CTCGAG 1 cut(s) 484
SmlI CTYRAG 1 cut(s) 484
SmoI CTYRAG 1 cut(s) 484
Sse9I AATT 5 cut(s) 191, 383, 404, 520, 535
SsiI CCGC 4 cut(s) 114, 187, 452, 783
SspI AATATT 1 cut(s) 578
SspMI CTAG 2 cut(s) 66, 717
TaaI ACNGT 2 cut(s) 182, 425
TaiI ACGT 1 cut(s) 696
TaqI TCGA 5 cut(s) 366, 485, 494, 524, 771
TasI AATT 5 cut(s) 191, 383, 404, 520, 535
TauI GCSGC 1 cut(s) 116
TfiI GAWTC 3 cut(s) 526, 547, 641
Tru1I TTAA 3 cut(s) 56, 198, 243
Tru9I TTAA 3 cut(s) 56, 198, 243
TscAI CASTG 1 cut(s) 607
TseFI GTSAC 2 cut(s) 182, 419
TseI GCWGC 4 cut(s) 69, 78, 81, 272
Tsp45I GTSAC 2 cut(s) 182, 419
TspDTI ATGAA 5 cut(s) 633, 664, 677, 696, 759
TspGWI ACGGA 2 cut(s) 407, 778
TspRI CASTG 1 cut(s) 607
XceI RCATGY 1 cut(s) 622
XhoI CTCGAG 1 cut(s) 484
XspI CTAG 2 cut(s) 66, 717
Zsp2I ATGCAT 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.