MD00G1059900.v1.1

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0011096
Physical Location & Seq
Forward (+)
11143636 .. 11145267
1632 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1059900.v1.1.491

Sequence Viewer

Length: 945 bp
ATGAGTAGTAGTAGCCATAGCCATAACCACACTCATCACATTTCGACGACAACCACAACACCGTCAACAAAAGGCAACGGCAACACGCAGGCTTGCGCTGCGTGCAAATACCAGCGCAGAAAGTGCGCCCCCGACTGCATTCTAGCCCCTTACTTCCCCCACGACCGCCAGCGCCAGTTCCTCAACGCTCACAAGCTCTTTGGCGTCAGCAACATCACGAAAATCATCAAACACCTTGACCAGCCCGACAAGGATGAGGCCATGCGCACCATCATCTTCCAGTCTGACGTTCGCGCCAACGATCCCGTTGGCGGTTGTTACAGAATCATTCGCGAGATGCAGCACTTGATCGAGTACAACAAGGCTGAGCTCGACATTATTCTTCACCAGCTAGCCATATGCAGAGCTCAGGCACAACAAGTTCATCAACAACAGCATCAAAACCCTATTCAAATGCCGGAAATCGGAGATCAAAACACGTGCGATCTATTGATTAACGGGGATCCTTTGAGCTTGTGCGGCAACCCAATGGGGCATTTCCATTACATTCAACAACCTCAGCCTCCTCACCATGCAGTTGCACTGCAGCAAGAACAACCGCAAGAACAACAACAACAACTGCCTTATGTGTTTGTTCAAAACAACGCCAATAGCAACAACAATAGTGACAATAATAATGGGGGCCCACATGCACATCCACATCATCAACATTTGCATGAAGATGTGAGCATATGGGCCATGCAGGATTCTATGTCTTCCTTGGATATCAAGCAATGTGGTGGTGGGATGAATGGGATTGCCAATGGATGTGAGGATTTGAAGCCGTTCCTTGATCAGATGGGTTGTGGTGATGATCATGACAGAAATAATGGGGAGGTGGTCGATATTAACGGTGATCATCAACACAGTGAGGAAGCATTGTTAAGGGTACATAGAGCGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

315

Amino Acids

35.26

Weight (kDa)

6.07

Isoelectric Point (pI)

45.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 31 - 125 1.6e-35 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 266
AccII CGCG 2 cut(s) 294, 333
AciI CCGC 4 cut(s) 166, 312, 519, 599
AclWI GGATC 3 cut(s) 296, 497, 510
AcvI CACGTG 1 cut(s) 480
AcyI GRCGYC 1 cut(s) 204
AfaI GTAC 2 cut(s) 356, 930
AfiI CCNNNNNNNGG 2 cut(s) 311, 464
AflIII ACRYGT 1 cut(s) 477
AgsI TTSAA 4 cut(s) 452, 551, 638, 820
AluBI AGCT 5 cut(s) 196, 370, 391, 407, 513
AluI AGCT 5 cut(s) 196, 370, 391, 407, 513
Alw21I GWGCWC 2 cut(s) 372, 409
AlwI GGATC 3 cut(s) 296, 497, 510
AoxI GGCC 3 cut(s) 258, 682, 735
ApaI GGGCCC 1 cut(s) 686
ApeKI GCWGC 3 cut(s) 98, 340, 586
Asp700I GAANNNNTTC 1 cut(s) 824
AspLEI GCGC 6 cut(s) 98, 117, 128, 174, 267, 296
AspS9I GGNCC 3 cut(s) 682, 683, 735
AsuHPI GGTGA 4 cut(s) 377, 560, 860, 905
AsuNHI GCTAGC 1 cut(s) 391
BaeGI GKGCMC 1 cut(s) 686
BamHI GGATCC 1 cut(s) 502
BanII GRGCYC 3 cut(s) 372, 409, 686
BbrPI CACGTG 1 cut(s) 480
BbsI GAAGAC 1 cut(s) 747
Bbv12I GWGCWC 2 cut(s) 372, 409
BbvCI CCTCAGC 1 cut(s) 558
BbvI GCAGC 3 cut(s) 85, 352, 598
BccI CCATC 2 cut(s) 278, 832
BceAI ACGGC 2 cut(s) 94, 808
BclI TGATCA 3 cut(s) 832, 853, 895
BfaI CTAG 2 cut(s) 143, 392
BfmI CTRYAG 1 cut(s) 584
BfoI RGCGCY 1 cut(s) 175
BisI GCNGC 4 cut(s) 99, 341, 520, 587
BlpI GCTNAGC 1 cut(s) 366
BlsI GCNGC 4 cut(s) 100, 342, 521, 588
BmgT120I GGNCC 3 cut(s) 682, 683, 735
BmiI GGNNCC 3 cut(s) 504, 683, 684
BmsI GCATC 2 cut(s) 327, 445
BmtI GCTAGC 1 cut(s) 395
BpiI GAAGAC 1 cut(s) 747
Bpu10I CCTNAGC 2 cut(s) 408, 558
Bpu1102I GCTNAGC 1 cut(s) 366
BsaAI YACGTR 1 cut(s) 480
BsaHI GRCGYC 1 cut(s) 204
BsaJI CCNNGG 1 cut(s) 759
Bsc4I CCNNNNNNNGG 2 cut(s) 311, 464
Bse1I ACTGG 2 cut(s) 175, 280
Bse3DI GCAATG 1 cut(s) 779
BseDI CCNNGG 1 cut(s) 759
BseGI GGATG 4 cut(s) 259, 694, 792, 812
BseLI CCNNNNNNNGG 2 cut(s) 311, 464
BseMI GCAATG 1 cut(s) 779
BseMII CTCAG 3 cut(s) 357, 422, 572
BseNI ACTGG 2 cut(s) 175, 280
BseRI GAGGAG 1 cut(s) 555
BseSI GKGCMC 1 cut(s) 686
BseXI GCAGC 3 cut(s) 85, 352, 598
Bsh1236I CGCG 2 cut(s) 294, 333
Bsh1285I CGRYCG 1 cut(s) 166
BshFI GGCC 3 cut(s) 260, 684, 737
BsiEI CGRYCG 1 cut(s) 166
BsiHKAI GWGCWC 2 cut(s) 372, 409
BsiSI CCGG 1 cut(s) 458
BslI CCNNNNNNNGG 2 cut(s) 311, 464
BsmI GAATGC 1 cut(s) 138
BsnI GGCC 3 cut(s) 260, 684, 737
Bsp120I GGGCCC 1 cut(s) 682
Bsp1286I GDGCHC 3 cut(s) 372, 409, 686
Bsp143I GATC 8 cut(s) 301, 348, 469, 484, 502, 832, 853, 895
Bsp1720I GCTNAGC 1 cut(s) 366
Bsp68I TCGCGA 1 cut(s) 333
BspACI CCGC 4 cut(s) 166, 312, 519, 599
BspANI GGCC 3 cut(s) 260, 684, 737
BspCNI CTCAG 3 cut(s) 358, 421, 571
BspFNI CGCG 2 cut(s) 294, 333
BspHI TCATGA 1 cut(s) 856
BspLI GGNNCC 3 cut(s) 504, 683, 684
BspMAI CTGCAG 1 cut(s) 588
BspOI GCTAGC 1 cut(s) 395
BspPI GGATC 3 cut(s) 296, 497, 510
BsrDI GCAATG 1 cut(s) 779
BsrI ACTGG 2 cut(s) 175, 280
BssECI CCNNGG 1 cut(s) 759
BssMI GATC 8 cut(s) 301, 348, 469, 484, 502, 832, 853, 895
BssNI GRCGYC 1 cut(s) 204
BssT1I CCWWGG 1 cut(s) 759
Bst4CI ACNGT 3 cut(s) 63, 893, 908
BstACI GRCGYC 1 cut(s) 204
BstAPI GCANNNNNTGC 1 cut(s) 123
BstBAI YACGTR 1 cut(s) 480
BstC8I GCNNGC 5 cut(s) 90, 94, 103, 170, 393
BstDEI CTNAG 3 cut(s) 366, 408, 558
BstF5I GGATG 4 cut(s) 259, 694, 792, 812
BstFNI CGCG 2 cut(s) 294, 333
BstH2I RGCGCY 1 cut(s) 175
BstHHI GCGC 6 cut(s) 98, 117, 128, 174, 267, 296
BstKTI GATC 8 cut(s) 304, 351, 472, 487, 505, 835, 856, 898
BstMBI GATC 8 cut(s) 301, 348, 469, 484, 502, 832, 853, 895
BstMCI CGRYCG 1 cut(s) 166
BstMWI GCNNNNNNNGC 4 cut(s) 98, 102, 123, 519
BstNSI RCATGY 1 cut(s) 692
BstSFI CTRYAG 1 cut(s) 584
BstSLI GKGCMC 1 cut(s) 686
BstUI CGCG 2 cut(s) 294, 333
BstV1I GCAGC 3 cut(s) 85, 352, 598
BstV2I GAAGAC 1 cut(s) 747
BstX2I RGATCY 1 cut(s) 502
BstYI RGATCY 1 cut(s) 502
BsuRI GGCC 3 cut(s) 260, 684, 737
BtsCI GGATG 4 cut(s) 259, 694, 792, 812
BtsI GCAGTG 1 cut(s) 581
BtsIMutI CAGTG 2 cut(s) 581, 913
BtuMI TCGCGA 1 cut(s) 333
Cac8I GCNNGC 5 cut(s) 90, 94, 103, 170, 393
CciI TCATGA 1 cut(s) 856
CfoI GCGC 6 cut(s) 98, 117, 128, 174, 267, 296
Cfr13I GGNCC 3 cut(s) 682, 683, 735
CseI GACGC 1 cut(s) 193
Csp6I GTAC 2 cut(s) 355, 929
CspCI CAANNNNNGTGG 2 cut(s) 757, 792
CviAII CATG 6 cut(s) 262, 572, 689, 716, 739, 857
CviQI GTAC 2 cut(s) 355, 929
DdeI CTNAG 3 cut(s) 366, 408, 558
DpnI GATC 8 cut(s) 303, 350, 471, 486, 504, 834, 855, 897
DpnII GATC 8 cut(s) 301, 348, 469, 484, 502, 832, 853, 895
Ecl136II GAGCTC 2 cut(s) 370, 407
Eco130I CCWWGG 1 cut(s) 759
Eco24I GRGCYC 3 cut(s) 372, 409, 686
Eco32I GATATC 1 cut(s) 766
Eco53kI GAGCTC 2 cut(s) 370, 407
Eco72I CACGTG 1 cut(s) 480
EcoICRI GAGCTC 2 cut(s) 370, 407
EcoO109I RGGNCCY 1 cut(s) 682
EcoRV GATATC 1 cut(s) 766
EcoT14I CCWWGG 1 cut(s) 759
EcoT38I GRGCYC 3 cut(s) 372, 409, 686
ErhI CCWWGG 1 cut(s) 759
FaeI CATG 6 cut(s) 265, 575, 692, 719, 742, 860
FatI CATG 6 cut(s) 261, 571, 688, 715, 738, 856
FauNDI CATATG 2 cut(s) 398, 731
FbaI TGATCA 3 cut(s) 832, 853, 895
Fnu4HI GCNGC 4 cut(s) 99, 341, 520, 587
FokI GGATG 4 cut(s) 266, 681, 799, 819
FriOI GRGCYC 3 cut(s) 372, 409, 686
Fsp4HI GCNGC 4 cut(s) 99, 341, 520, 587
FspAI RTGCGCAY 1 cut(s) 266
FspBI CTAG 2 cut(s) 143, 392
FspI TGCGCA 1 cut(s) 266
GlaI GCGC 6 cut(s) 97, 116, 127, 173, 266, 295
GluI GCNGC 4 cut(s) 99, 341, 520, 587
HaeII RGCGCY 1 cut(s) 175
HaeIII GGCC 3 cut(s) 260, 684, 737
HapII CCGG 1 cut(s) 458
HgaI GACGC 1 cut(s) 193
HhaI GCGC 6 cut(s) 98, 117, 128, 174, 267, 296
Hin1I GRCGYC 1 cut(s) 204
Hin1II CATG 6 cut(s) 265, 575, 692, 719, 742, 860
Hin6I GCGC 6 cut(s) 96, 115, 126, 172, 265, 294
HinP1I GCGC 6 cut(s) 96, 115, 126, 172, 265, 294
HincII GTYRAC 1 cut(s) 66
HindII GTYRAC 1 cut(s) 66
HinfI GANTC 2 cut(s) 324, 746
HpaII CCGG 1 cut(s) 458
HphI GGTGA 4 cut(s) 377, 560, 860, 905
Hpy166II GTNNAC 1 cut(s) 66
Hpy188I TCNGA 3 cut(s) 286, 467, 837
Hpy188III TCNNGA 3 cut(s) 217, 332, 857
Hpy8I GTNNAC 1 cut(s) 66
Hpy99I CGWCG 1 cut(s) 49
HpyCH4III ACNGT 3 cut(s) 63, 893, 908
HpyCH4IV ACGT 2 cut(s) 288, 479
HpyF10VI GCNNNNNNNGC 4 cut(s) 98, 102, 123, 519
HpyF3I CTNAG 3 cut(s) 366, 408, 558
HpySE526I ACGT 2 cut(s) 288, 479
Hsp92I GRCGYC 1 cut(s) 204
Hsp92II CATG 6 cut(s) 265, 575, 692, 719, 742, 860
HspAI GCGC 6 cut(s) 96, 115, 126, 172, 265, 294
Ksp22I TGATCA 3 cut(s) 832, 853, 895
Kzo9I GATC 8 cut(s) 301, 348, 469, 484, 502, 832, 853, 895
Lsp1109I GCAGC 3 cut(s) 85, 352, 598
LweI GCATC 2 cut(s) 327, 445
MaeI CTAG 2 cut(s) 143, 392
MaeII ACGT 2 cut(s) 288, 479
MaeIII GTNAC 2 cut(s) 317, 665
MalI GATC 8 cut(s) 303, 350, 471, 486, 504, 834, 855, 897
MboI GATC 8 cut(s) 301, 348, 469, 484, 502, 832, 853, 895
MboII GAAGA 4 cut(s) 268, 374, 731, 747
MflI RGATCY 1 cut(s) 502
MhlI GDGCHC 3 cut(s) 372, 409, 686
MnlI CCTC 8 cut(s) 191, 250, 567, 573, 576, 805, 868, 904
MroXI GAANNNNTTC 1 cut(s) 824
MseI TTAA 3 cut(s) 495, 888, 923
MslI CAYNNNNRTG 2 cut(s) 714, 720
MspI CCGG 1 cut(s) 458
Mva1269I GAATGC 1 cut(s) 138
MvnI CGCG 2 cut(s) 294, 333
MwoI GCNNNNNNNGC 4 cut(s) 98, 102, 123, 519
NdeI CATATG 2 cut(s) 398, 731
NdeII GATC 8 cut(s) 301, 348, 469, 484, 502, 832, 853, 895
NheI GCTAGC 1 cut(s) 391
NlaIII CATG 6 cut(s) 265, 575, 692, 719, 742, 860
NlaIV GGNNCC 3 cut(s) 504, 683, 684
NmuCI GTSAC 1 cut(s) 665
NruI TCGCGA 1 cut(s) 333
NsbI TGCGCA 1 cut(s) 266
NspI RCATGY 1 cut(s) 692
PagI TCATGA 1 cut(s) 856
PctI GAATGC 1 cut(s) 138
PdmI GAANNNNTTC 1 cut(s) 824
PfeI GAWTC 2 cut(s) 324, 746
PkrI GCNGC 4 cut(s) 100, 342, 521, 588
PmaCI CACGTG 1 cut(s) 480
PmlI CACGTG 1 cut(s) 480
Ppu21I YACGTR 1 cut(s) 480
Psp124BI GAGCTC 2 cut(s) 372, 409
PspCI CACGTG 1 cut(s) 480
PspN4I GGNNCC 3 cut(s) 504, 683, 684
PspOMI GGGCCC 1 cut(s) 682
PspPI GGNCC 3 cut(s) 682, 683, 735
PstI CTGCAG 1 cut(s) 588
PsuI RGATCY 1 cut(s) 502
RruI TCGCGA 1 cut(s) 333
RsaI GTAC 2 cut(s) 356, 930
RsaNI GTAC 2 cut(s) 355, 929
RseI CAYNNNNRTG 2 cut(s) 714, 720
SacI GAGCTC 2 cut(s) 372, 409
SaqAI TTAA 3 cut(s) 495, 888, 923
SatI GCNGC 4 cut(s) 99, 341, 520, 587
Sau3AI GATC 8 cut(s) 301, 348, 469, 484, 502, 832, 853, 895
Sau96I GGNCC 3 cut(s) 682, 683, 735
SduI GDGCHC 3 cut(s) 372, 409, 686
SfaNI GCATC 2 cut(s) 327, 445
SfcI CTRYAG 1 cut(s) 584
SmiMI CAYNNNNRTG 2 cut(s) 714, 720
SsiI CCGC 4 cut(s) 166, 312, 519, 599
SspMI CTAG 2 cut(s) 143, 392
SstI GAGCTC 2 cut(s) 372, 409
StyI CCWWGG 1 cut(s) 759
TaaI ACNGT 3 cut(s) 63, 893, 908
TaiI ACGT 2 cut(s) 291, 482
TaqI TCGA 4 cut(s) 44, 351, 372, 882
TatI WGTACW 1 cut(s) 354
TauI GCSGC 1 cut(s) 522
TfiI GAWTC 2 cut(s) 324, 746
Tru1I TTAA 3 cut(s) 495, 888, 923
Tru9I TTAA 3 cut(s) 495, 888, 923
TscAI CASTG 2 cut(s) 588, 913
TseFI GTSAC 1 cut(s) 665
TseI GCWGC 3 cut(s) 98, 340, 586
Tsp45I GTSAC 1 cut(s) 665
TspDTI ATGAA 3 cut(s) 413, 732, 803
TspRI CASTG 2 cut(s) 588, 913
XceI RCATGY 1 cut(s) 692
XmnI GAANNNNTTC 1 cut(s) 824
XspI CTAG 2 cut(s) 143, 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.