Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0011096

Physical Location & Seq

Genomic Coordinates Forward (+)

3462265 .. 3463871

Gene Structure 1607 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G049100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGTGTCCACCTTTCCTCTCATCTCTCCCCATCCCTCATCCCACTTCCCCCTTCATTTCCATTGAGAAAATAAGGGAAACCCCCCAGAAAAAAAAGCCTCATCAAGAAAAAAAACCGCCTCTACCACCCCCGCCGGAGACGCATTCGATTACCAACAACACATCAACCCAAAAAGAAATTATCATGAGTAGTATTAGCAACCATACTCATCATCAAATCCCAACACCAACAACACCTACTACAACAAAAGGTAACGGCAACGCCCAAGCTTGCGCTGCTTGCAAATACCAACGCAGGAAGTGCGCTCCTGATTGCATTCTCGCCCCTTTTTTCCCTCACGATCGCCAACGCCAGTTCCTCAACGCTCATAAATTGTTTGGCGTCAGCAACATCACAAAAATTATCAAACACCTTAATCTATCCGACAAGGAAGAGGCCATGCGCACCATCATCTTCCAGTCTGATATTCGAGCCAACGATCCTGTTGGCGGGTGCTACAGAATCATTCGGGAGCTGCAGCGTCTCATCGAGTATAACAAGGCGGAGCTCGACATTGTTCTTCACCAGCTAGCCATATGCAGAGCACAAGCACAAGCACAGCAGCAGCAGCAGCAGAACCAGATTCAAATCCCAGAAGTTGGAGATCAGAATTCATGTGATCAGTTGATTAATATGGACCCTTTGAGTTTTTACAACAACCAAGTTGCCCATTACCATTATGTTCAGCCTCATCCTCATGCATTGCCTGCTGTGCAACAACAACAACAGCAACAAGAAGTGCCCTATGTGCTTGTTCAAAATAACAATATTAATAGCCCTAATAGTAATAGCAATAACAATAATAATAACCCACATCAGCATTTGCATGAAGATATGAACATGTGGGCCATGCAAGATTCTATGTCTTCATTGGATATCAAGCATGGTGGTGGTATGAATGCCAATGATTGTGAAGATTTGAAGCCCTTTGTTGAGATTCCTTGTGATGATGATCAGAGAAATGGGGAGGTCAGGTTCCAGCCTGAGGATATTGGTGATCATCAGCAGAGGTTTGTAGTACCAAACACAAAATTACTTATATCATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

363

Amino Acids

41.18

Weight (kDa)

6.54

Isoelectric Point (pI)

53.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13850
fragaria_vesca	FvH4_6g33490
malus_domestica	MD00G1059900.v1.1 MD09G1192800.v1.1
prunus_persica	Prupe.3G049100_v2.0.a1
pyrus_communis	pycom07g10150 pycom09g10930
rosa_chinensis	RchiOBHm_Chr2g0143351
rosa_laevigata	RLG00000020031
rosa_multiflora	Rmu_co8024774.1_g000001 Rmu_co8058466.1_g000001 Rmu_sc0003507.1_g000017 Rmu_sc0024801.1_g000004
rosa_roxburghii	Rroxscaffold_2G00101940
rosa_rugosa	Rorug02G0380800
rosa_samantha	Rh2AG433700 Rh2BG441700 Rh2CG419400 Rh2DG451800
rosa_wichuraiana	Rw2G035360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	443
AccB7I	CCANNNNNTGG	1 cut(s)	638
AciI	CCGC	4 cut(s)	116, 131, 489, 542
AclWI	GGATC	1 cut(s)	473
AcsI	RAATTY	1 cut(s)	649
AcyI	GRCGYC	1 cut(s)	381
AfaI	GTAC	1 cut(s)	1059
AfiI	CCNNNNNNNGG	3 cut(s)	488, 638, 1024
AflIII	ACRYGT	1 cut(s)	879
AgsI	TTSAA	3 cut(s)	626, 797, 961
AloI	GAACNNNNNNTCC	2 cut(s)	998, 1030
AluBI	AGCT	4 cut(s)	269, 514, 547, 568
AluI	AGCT	4 cut(s)	269, 514, 547, 568
Alw21I	GWGCWC	2 cut(s)	549, 586
Alw26I	GTCTC	2 cut(s)	131, 527
AlwI	GGATC	1 cut(s)	473
AoxI	GGCC	2 cut(s)	435, 885
ApeKI	GCWGC	7 cut(s)	275, 514, 517, 601, 604, 607, 610
ApoI	RAATTY	1 cut(s)	649
AseI	ATTAAT	2 cut(s)	669, 810
AspLEI	GCGC	3 cut(s)	275, 305, 444
AspS9I	GGNCC	2 cut(s)	676, 885
AsuHPI	GGTGA	2 cut(s)	554, 1046
AsuNHI	GCTAGC	1 cut(s)	568
AvaII	GGWCC	1 cut(s)	676
AxyI	CCTNAGG	1 cut(s)	1023
BaeGI	GKGCMC	1 cut(s)	783
BanII	GRGCYC	1 cut(s)	549
BbsI	GAAGAC	1 cut(s)	897
Bbv12I	GWGCWC	2 cut(s)	549, 586
BbvI	GCAGC	7 cut(s)	262, 501, 529, 613, 616, 619, 622
BccI	CCATC	2 cut(s)	38, 455
BceAI	ACGGC	1 cut(s)	271
BclI	TGATCA	3 cut(s)	658, 991, 1036
BcoDI	GTCTC	2 cut(s)	131, 527
BfaI	CTAG	1 cut(s)	569
BfmI	CTRYAG	2 cut(s)	496, 515
BisI	GCNGC	7 cut(s)	276, 515, 518, 602, 605, 608, 611
BlsI	GCNGC	7 cut(s)	277, 516, 519, 603, 606, 609, 612
Bme18I	GGWCC	1 cut(s)	676
BmgT120I	GGNCC	2 cut(s)	676, 885
BmiI	GGNNCC	2 cut(s)	678, 1016
BmtI	GCTAGC	1 cut(s)	572
BpiI	GAAGAC	1 cut(s)	897
BsaBI	GATNNNNATC	2 cut(s)	626, 990
BsaHI	GRCGYC	1 cut(s)	381
BsaXI	ACNNNNNCTCC	2 cut(s)	998, 1028
Bsc4I	CCNNNNNNNGG	3 cut(s)	488, 638, 1024
Bse1I	ACTGG	2 cut(s)	352, 457
Bse21I	CCTNAGG	1 cut(s)	1023
Bse3DI	GCAATG	1 cut(s)	740
Bse8I	GATNNNNATC	2 cut(s)	626, 990
BseGI	GGATG	3 cut(s)	30, 37, 730
BseJI	GATNNNNATC	2 cut(s)	626, 990
BseLI	CCNNNNNNNGG	3 cut(s)	488, 638, 1024
BseMI	GCAATG	1 cut(s)	740
BseMII	CTCAG	1 cut(s)	1014
BseNI	ACTGG	2 cut(s)	352, 457
BseSI	GKGCMC	1 cut(s)	783
BseXI	GCAGC	7 cut(s)	262, 501, 529, 613, 616, 619, 622
Bsh1285I	CGRYCG	1 cut(s)	343
BshFI	GGCC	2 cut(s)	437, 887
BsiEI	CGRYCG	1 cut(s)	343
BsiHKAI	GWGCWC	2 cut(s)	549, 586
BsiSI	CCGG	1 cut(s)	134
BslI	CCNNNNNNNGG	3 cut(s)	488, 638, 1024
BsmAI	GTCTC	2 cut(s)	131, 527
BsmBI	CGTCTC	2 cut(s)	131, 527
BsmI	GAATGC	3 cut(s)	142, 315, 943
BsnI	GGCC	2 cut(s)	437, 887
Bsp1286I	GDGCHC	3 cut(s)	549, 586, 783
Bsp143I	GATC	6 cut(s)	340, 478, 643, 658, 991, 1036
BspACI	CCGC	4 cut(s)	116, 131, 489, 542
BspANI	GGCC	2 cut(s)	437, 887
BspCNI	CTCAG	1 cut(s)	1015
BspHI	TCATGA	1 cut(s)	183
BspLI	GGNNCC	2 cut(s)	678, 1016
BspMAI	CTGCAG	1 cut(s)	519
BspOI	GCTAGC	1 cut(s)	572
BspPI	GGATC	1 cut(s)	473
BsrDI	GCAATG	1 cut(s)	740
BsrI	ACTGG	2 cut(s)	352, 457
BssMI	GATC	6 cut(s)	340, 478, 643, 658, 991, 1036
BssNI	GRCGYC	1 cut(s)	381
Bst6I	CTCTTC	1 cut(s)	426
BstACI	GRCGYC	1 cut(s)	381
BstAPI	GCANNNNNTGC	2 cut(s)	300, 746
BstC8I	GCNNGC	4 cut(s)	271, 280, 570, 747
BstDEI	CTNAG	1 cut(s)	1023
BstF5I	GGATG	3 cut(s)	30, 37, 730
BstHHI	GCGC	3 cut(s)	275, 305, 444
BstKTI	GATC	6 cut(s)	343, 481, 646, 661, 994, 1039
BstMAI	GTCTC	2 cut(s)	131, 527
BstMBI	GATC	6 cut(s)	340, 478, 643, 658, 991, 1036
BstMCI	CGRYCG	1 cut(s)	343
BstMWI	GCNNNNNNNGC	9 cut(s)	139, 275, 279, 300, 607, 610, 746, 751, 787
BstNSI	RCATGY	1 cut(s)	883
BstSFI	CTRYAG	2 cut(s)	496, 515
BstSLI	GKGCMC	1 cut(s)	783
BstV1I	GCAGC	7 cut(s)	262, 501, 529, 613, 616, 619, 622
BstV2I	GAAGAC	1 cut(s)	897
Bsu36I	CCTNAGG	1 cut(s)	1023
BsuRI	GGCC	2 cut(s)	437, 887
BtsCI	GGATG	3 cut(s)	30, 37, 730
Cac8I	GCNNGC	4 cut(s)	271, 280, 570, 747
CciI	TCATGA	1 cut(s)	183
CfoI	GCGC	3 cut(s)	275, 305, 444
Cfr13I	GGNCC	2 cut(s)	676, 885
CseI	GACGC	3 cut(s)	148, 370, 509
Csp6I	GTAC	1 cut(s)	1058
CspCI	CAANNNNNGTGG	2 cut(s)	907, 942
CviAII	CATG	8 cut(s)	184, 439, 654, 737, 866, 880, 889, 923
CviQI	GTAC	1 cut(s)	1058
DdeI	CTNAG	1 cut(s)	1023
DpnI	GATC	6 cut(s)	342, 480, 645, 660, 993, 1038
DpnII	GATC	6 cut(s)	340, 478, 643, 658, 991, 1036
Eam1104I	CTCTTC	1 cut(s)	426
EarI	CTCTTC	1 cut(s)	426
EciI	GGCGGA	1 cut(s)	557
Ecl136II	GAGCTC	1 cut(s)	547
Eco24I	GRGCYC	1 cut(s)	549
Eco32I	GATATC	1 cut(s)	916
Eco47I	GGWCC	1 cut(s)	676
Eco53kI	GAGCTC	1 cut(s)	547
Eco81I	CCTNAGG	1 cut(s)	1023
EcoICRI	GAGCTC	1 cut(s)	547
EcoRI	GAATTC	1 cut(s)	649
EcoRV	GATATC	1 cut(s)	916
EcoT22I	ATGCAT	1 cut(s)	742
EcoT38I	GRGCYC	1 cut(s)	549
Esp3I	CGTCTC	2 cut(s)	131, 527
FaeI	CATG	8 cut(s)	187, 442, 657, 740, 869, 883, 892, 926
FatI	CATG	8 cut(s)	183, 438, 653, 736, 865, 879, 888, 922
FauI	CCCGC	2 cut(s)	138, 482
FauNDI	CATATG	1 cut(s)	575
FbaI	TGATCA	3 cut(s)	658, 991, 1036
Fnu4HI	GCNGC	7 cut(s)	276, 515, 518, 602, 605, 608, 611
FokI	GGATG	3 cut(s)	17, 24, 717
FriOI	GRGCYC	1 cut(s)	549
Fsp4HI	GCNGC	7 cut(s)	276, 515, 518, 602, 605, 608, 611
FspAI	RTGCGCAY	1 cut(s)	443
FspBI	CTAG	1 cut(s)	569
FspI	TGCGCA	1 cut(s)	443
GlaI	GCGC	3 cut(s)	274, 304, 443
GluI	GCNGC	7 cut(s)	276, 515, 518, 602, 605, 608, 611
HaeIII	GGCC	2 cut(s)	437, 887
HapII	CCGG	1 cut(s)	134
HgaI	GACGC	3 cut(s)	148, 370, 509
HhaI	GCGC	3 cut(s)	275, 305, 444
Hin1I	GRCGYC	1 cut(s)	381
Hin1II	CATG	8 cut(s)	187, 442, 657, 740, 869, 883, 892, 926
Hin6I	GCGC	3 cut(s)	273, 303, 442
HinP1I	GCGC	3 cut(s)	273, 303, 442
HindIII	AAGCTT	1 cut(s)	267
HinfI	GANTC	4 cut(s)	501, 622, 896, 976
HpaII	CCGG	1 cut(s)	134
HphI	GGTGA	2 cut(s)	554, 1046
Hpy166II	GTNNAC	1 cut(s)	8
Hpy188I	TCNGA	4 cut(s)	424, 463, 648, 996
Hpy188III	TCNNGA	5 cut(s)	104, 184, 308, 338, 509
Hpy8I	GTNNAC	1 cut(s)	8
HpyAV	CCTTC	1 cut(s)	61
HpyCH4V	TGCA	8 cut(s)	282, 315, 517, 579, 740, 754, 865, 892
HpyF10VI	GCNNNNNNNGC	9 cut(s)	139, 275, 279, 300, 607, 610, 746, 751, 787
HpyF3I	CTNAG	1 cut(s)	1023
Hsp92I	GRCGYC	1 cut(s)	381
Hsp92II	CATG	8 cut(s)	187, 442, 657, 740, 869, 883, 892, 926
HspAI	GCGC	3 cut(s)	273, 303, 442
Ksp22I	TGATCA	3 cut(s)	658, 991, 1036
Kzo9I	GATC	6 cut(s)	340, 478, 643, 658, 991, 1036
LmnI	GCTCC	3 cut(s)	310, 511, 544
Lsp1109I	GCAGC	7 cut(s)	262, 501, 529, 613, 616, 619, 622
MaeI	CTAG	1 cut(s)	569
MaeIII	GTNAC	1 cut(s)	251
MalI	GATC	6 cut(s)	342, 480, 645, 660, 993, 1038
MboI	GATC	6 cut(s)	340, 478, 643, 658, 991, 1036
MboII	GAAGA	6 cut(s)	443, 445, 551, 881, 897, 965
MhlI	GDGCHC	3 cut(s)	549, 586, 783
MluCI	AATT	5 cut(s)	177, 371, 399, 649, 1070
MmeI	TCCRAC	2 cut(s)	447, 619
Mph1103I	ATGCAT	1 cut(s)	742
MseI	TTAA	3 cut(s)	414, 669, 810
MslI	CAYNNNNRTG	3 cut(s)	735, 864, 927
MspI	CCGG	1 cut(s)	134
Mva1269I	GAATGC	3 cut(s)	142, 315, 943
MwoI	GCNNNNNNNGC	9 cut(s)	139, 275, 279, 300, 607, 610, 746, 751, 787
NdeI	CATATG	1 cut(s)	575
NdeII	GATC	6 cut(s)	340, 478, 643, 658, 991, 1036
NheI	GCTAGC	1 cut(s)	568
NlaIII	CATG	8 cut(s)	187, 442, 657, 740, 869, 883, 892, 926
NlaIV	GGNNCC	2 cut(s)	678, 1016
NsbI	TGCGCA	1 cut(s)	443
NsiI	ATGCAT	1 cut(s)	742
NspI	RCATGY	1 cut(s)	883
PagI	TCATGA	1 cut(s)	183
PciI	ACATGT	1 cut(s)	879
PctI	GAATGC	3 cut(s)	142, 315, 943
PfeI	GAWTC	4 cut(s)	501, 622, 896, 976
PflMI	CCANNNNNTGG	1 cut(s)	638
PkrI	GCNGC	7 cut(s)	277, 516, 519, 603, 606, 609, 612
Ple19I	CGATCG	1 cut(s)	343
PscI	ACATGT	1 cut(s)	879
PshBI	ATTAAT	2 cut(s)	669, 810
Psp124BI	GAGCTC	1 cut(s)	549
PspN4I	GGNNCC	2 cut(s)	678, 1016
PspPI	GGNCC	2 cut(s)	676, 885
PstI	CTGCAG	1 cut(s)	519
PvuI	CGATCG	1 cut(s)	343
RsaI	GTAC	1 cut(s)	1059
RsaNI	GTAC	1 cut(s)	1058
RseI	CAYNNNNRTG	3 cut(s)	735, 864, 927
SacI	GAGCTC	1 cut(s)	549
SaqAI	TTAA	3 cut(s)	414, 669, 810
SatI	GCNGC	7 cut(s)	276, 515, 518, 602, 605, 608, 611
Sau3AI	GATC	6 cut(s)	340, 478, 643, 658, 991, 1036
Sau96I	GGNCC	2 cut(s)	676, 885
SduI	GDGCHC	3 cut(s)	549, 586, 783
SfcI	CTRYAG	2 cut(s)	496, 515
SinI	GGWCC	1 cut(s)	676
SmiMI	CAYNNNNRTG	3 cut(s)	735, 864, 927
Sse9I	AATT	5 cut(s)	177, 371, 399, 649, 1070
SsiI	CCGC	4 cut(s)	116, 131, 489, 542
SspI	AATATT	1 cut(s)	808
SspMI	CTAG	1 cut(s)	569
SstI	GAGCTC	1 cut(s)	549
TaqI	TCGA	4 cut(s)	146, 469, 528, 549
TasI	AATT	5 cut(s)	177, 371, 399, 649, 1070
TfiI	GAWTC	4 cut(s)	501, 622, 896, 976
Tru1I	TTAA	3 cut(s)	414, 669, 810
Tru9I	TTAA	3 cut(s)	414, 669, 810
TseI	GCWGC	7 cut(s)	275, 514, 517, 601, 604, 607, 610
TspDTI	ATGAA	6 cut(s)	43, 642, 882, 890, 897, 950
Van91I	CCANNNNNTGG	1 cut(s)	638
VpaK11BI	GGWCC	1 cut(s)	676
VspI	ATTAAT	2 cut(s)	669, 810
XapI	RAATTY	1 cut(s)	649
XceI	RCATGY	1 cut(s)	883
XspI	CTAG	1 cut(s)	569
Zsp2I	ATGCAT	1 cut(s)	742

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.