RLG00000020031

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0011096
Physical Location & Seq
Reverse (-)
60326981 .. 60328472
1492 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020031

Sequence Viewer

Length: 981 bp
ATGAGCATCACTAGTGGCAGCATCGTCACTAGAACATCATCCCCAACAACACCCAACTCCTCCTCCTCCTCTTCGACCAAAGGCAACGGCAACACCCAGGCCTGCGCCGCCTGCAAGTACCAGCGCCGGAAGTGCGCCCCCGACTGCATACTCGCCCCTTATTTCCCTCACGACCGGCAGCGCCAGTTCCTCAACGCCCACAAGCTCTTTGGCGTCAGCAACATCACCAAGATCATCAAACACCTCGACCACCTCGATAAGGAGGAGGCCATGCGCACCATCATTTTCCAGTCCGACGTCCGCGCCTCCGACCCCGTCGGCGGCTGCTACCGGATCATCCAGGAACTCCAGCGCCTCATCGAGTACAACAAGGCCGAGCTCGACATCGTCCTCCACCAACTCGCCATCTGCCGAGCACAGGCACAGCAGCAACAGCAGCCCATAATGCAGCAGATTCCGGAGGTCGGGGACACTACCTGCGCTGATCAGATGATTAGTGTTGACCCTCTGAGCCTGTACGGAAACCCTATGCATTTTCATTATCTTCAGCAGCAGCCTAATGTGCAAGTTACTGGGCAGCAGGATCAGGGTGCCCCCTATTTGTTTGTGCAAAATACTAATGGGAATAATGGGCACCAGCAGCAGCATATGGTACCGGAGGATATGAACATGTGGGCTATGCAGGATTCCATGTCGTCGTTGCATATTAAGCATGGGATGAATGCCGGTGACTGTGAAGATATCAAGCCCTTTGTTGACATTGCCTGTGATGATGATCAGAGGAATCATGAGATCAAGTTCCAGCCTGATGCAATTGGCGACCAGAGTGATGAAGCATTGCTGAAGATAGAGGATGGCAATTTAAAAGATGATCAGCAGAGTGAGTCAGCTGCCCAACAAGTCCAACATCATTATCAGGATCATGGTGATCTGAAAGGTGAAGCTACTTTGTTCATGACCCTCACAAATTGTAGCAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

327

Amino Acids

36.51

Weight (kDa)

5.34

Isoelectric Point (pI)

49.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 34 - 129 2e-35 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 300
Acc16I TGCGCA 1 cut(s) 275
Acc36I ACCTGC 1 cut(s) 485
Acc65I GGTACC 1 cut(s) 652
AccB1I GGYRCC 3 cut(s) 590, 633, 652
AccII CGCG 1 cut(s) 303
AccIII TCCGGA 1 cut(s) 457
AciI CCGC 3 cut(s) 108, 301, 321
AclWI GGATC 3 cut(s) 341, 591, 927
AcuI CTGAAG 2 cut(s) 530, 863
AcyI GRCGYC 2 cut(s) 213, 297
AfaI GTAC 4 cut(s) 119, 365, 518, 654
AfiI CCNNNNNNNGG 4 cut(s) 259, 320, 418, 464
AflIII ACRYGT 1 cut(s) 669
AhlI ACTAGT 1 cut(s) 11
AjnI CCWGG 2 cut(s) 96, 339
AluBI AGCT 4 cut(s) 205, 379, 890, 944
AluI AGCT 4 cut(s) 205, 379, 890, 944
Alw21I GWGCWC 2 cut(s) 381, 418
AlwI GGATC 3 cut(s) 341, 591, 927
Aor13HI TCCGGA 1 cut(s) 457
AoxI GGCC 3 cut(s) 99, 267, 372
Asp718I GGTACC 1 cut(s) 652
AspLEI GCGC 8 cut(s) 107, 126, 137, 183, 276, 305, 354, 482
AsuHPI GGTGA 4 cut(s) 217, 740, 938, 950
BaeGI GKGCMC 2 cut(s) 595, 636
BanI GGYRCC 3 cut(s) 590, 633, 652
BanII GRGCYC 1 cut(s) 381
Bbv12I GWGCWC 2 cut(s) 381, 418
BccI CCATC 3 cut(s) 287, 413, 848
BceAI ACGGC 1 cut(s) 103
BciT130I CCWGG 2 cut(s) 98, 341
BclI TGATCA 3 cut(s) 484, 775, 871
BcuI ACTAGT 1 cut(s) 11
BfaI CTAG 2 cut(s) 12, 30
BfoI RGCGCY 3 cut(s) 127, 184, 355
BfuAI ACCTGC 1 cut(s) 485
Bme1390I CCNGG 2 cut(s) 98, 341
BmiI GGNNCC 3 cut(s) 592, 635, 654
BmrFI CCNGG 2 cut(s) 98, 341
BmrI ACTGGG 1 cut(s) 582
BmsI GCATC 3 cut(s) 15, 30, 799
BmuI ACTGGG 1 cut(s) 582
BpmI CTGGAG 1 cut(s) 332
BsaBI GATNNNNATC 1 cut(s) 774
BsaHI GRCGYC 2 cut(s) 213, 297
BsaJI CCNNGG 1 cut(s) 96
BsaWI WCCGGW 3 cut(s) 330, 457, 655
BsaXI ACNNNNNCTCC 2 cut(s) 47, 77
Bsc4I CCNNNNNNNGG 4 cut(s) 259, 320, 418, 464
Bse118I RCCGGY 2 cut(s) 174, 725
Bse1I ACTGG 3 cut(s) 184, 289, 577
Bse3DI GCAATG 2 cut(s) 759, 836
Bse8I GATNNNNATC 1 cut(s) 774
BseAI TCCGGA 1 cut(s) 457
BseBI CCWGG 2 cut(s) 98, 341
BseDI CCNNGG 1 cut(s) 96
BseGI GGATG 4 cut(s) 38, 336, 723, 859
BseJI GATNNNNATC 1 cut(s) 774
BseLI CCNNNNNNNGG 4 cut(s) 259, 320, 418, 464
BseMI GCAATG 2 cut(s) 759, 836
BseMII CTCAG 1 cut(s) 500
BseNI ACTGG 3 cut(s) 184, 289, 577
BseRI GAGGAG 5 cut(s) 49, 52, 55, 58, 278
BseSI GKGCMC 2 cut(s) 595, 636
Bsh1236I CGCG 1 cut(s) 303
Bsh1285I CGRYCG 1 cut(s) 175
BshFI GGCC 3 cut(s) 101, 269, 374
BshNI GGYRCC 3 cut(s) 590, 633, 652
BsiEI CGRYCG 1 cut(s) 175
BsiHKAI GWGCWC 2 cut(s) 381, 418
BsiSI CCGG 6 cut(s) 127, 175, 331, 458, 656, 726
BslFI GGGAC 1 cut(s) 482
BslI CCNNNNNNNGG 4 cut(s) 259, 320, 418, 464
BsmFI GGGAC 1 cut(s) 482
BsmI GAATGC 1 cut(s) 727
BsnI GGCC 3 cut(s) 101, 269, 374
Bsp1286I GDGCHC 4 cut(s) 381, 418, 595, 636
Bsp13I TCCGGA 1 cut(s) 457
Bsp143I GATC 9 cut(s) 231, 333, 484, 583, 775, 792, 871, 919, 928
BspACI CCGC 3 cut(s) 108, 301, 321
BspANI GGCC 3 cut(s) 101, 269, 374
BspCNI CTCAG 1 cut(s) 501
BspEI TCCGGA 1 cut(s) 457
BspFNI CGCG 1 cut(s) 303
BspHI TCATGA 2 cut(s) 787, 954
BspLI GGNNCC 3 cut(s) 592, 635, 654
BspMI ACCTGC 1 cut(s) 485
BspPI GGATC 3 cut(s) 341, 591, 927
BspT107I GGYRCC 3 cut(s) 590, 633, 652
BsrDI GCAATG 2 cut(s) 759, 836
BsrFI RCCGGY 2 cut(s) 174, 725
BsrI ACTGG 3 cut(s) 184, 289, 577
BssAI RCCGGY 2 cut(s) 174, 725
BssECI CCNNGG 1 cut(s) 96
BssMI GATC 9 cut(s) 231, 333, 484, 583, 775, 792, 871, 919, 928
BssNI GRCGYC 2 cut(s) 213, 297
Bst2UI CCWGG 2 cut(s) 98, 341
Bst4CI ACNGT 1 cut(s) 734
Bst6I CTCTTC 1 cut(s) 76
BstACI GRCGYC 2 cut(s) 213, 297
BstC8I GCNNGC 2 cut(s) 103, 112
BstDEI CTNAG 1 cut(s) 509
BstENI CCTNNNNNAGG 1 cut(s) 257
BstF5I GGATG 4 cut(s) 38, 336, 723, 859
BstFNI CGCG 1 cut(s) 303
BstH2I RGCGCY 3 cut(s) 127, 184, 355
BstHHI GCGC 8 cut(s) 107, 126, 137, 183, 276, 305, 354, 482
BstKTI GATC 9 cut(s) 234, 336, 487, 586, 778, 795, 874, 922, 931
BstMBI GATC 9 cut(s) 231, 333, 484, 583, 775, 792, 871, 919, 928
BstMCI CGRYCG 1 cut(s) 175
BstMWI GCNNNNNNNGC 9 cut(s) 107, 111, 132, 433, 436, 445, 562, 640, 709
BstNI CCWGG 2 cut(s) 98, 341
BstNSI RCATGY 1 cut(s) 673
BstSCI CCNGG 2 cut(s) 96, 339
BstSLI GKGCMC 2 cut(s) 595, 636
BstUI CGCG 1 cut(s) 303
BsuRI GGCC 3 cut(s) 101, 269, 374
BtsCI GGATG 4 cut(s) 38, 336, 723, 859
BveI ACCTGC 1 cut(s) 485
Cac8I GCNNGC 2 cut(s) 103, 112
CciI TCATGA 2 cut(s) 787, 954
CfoI GCGC 8 cut(s) 107, 126, 137, 183, 276, 305, 354, 482
Cfr10I RCCGGY 2 cut(s) 174, 725
CseI GACGC 1 cut(s) 202
Csp6I GTAC 4 cut(s) 118, 364, 517, 653
CviAII CATG 7 cut(s) 271, 670, 691, 713, 788, 923, 955
CviQI GTAC 4 cut(s) 118, 364, 517, 653
DdeI CTNAG 1 cut(s) 509
DpnI GATC 9 cut(s) 233, 335, 486, 585, 777, 794, 873, 921, 930
DpnII GATC 9 cut(s) 231, 333, 484, 583, 775, 792, 871, 919, 928
DraI TTTAAA 1 cut(s) 864
Eam1104I CTCTTC 1 cut(s) 76
EarI CTCTTC 1 cut(s) 76
Ecl136II GAGCTC 1 cut(s) 379
Eco147I AGGCCT 1 cut(s) 101
Eco24I GRGCYC 1 cut(s) 381
Eco32I GATATC 1 cut(s) 742
Eco53kI GAGCTC 1 cut(s) 379
Eco57I CTGAAG 2 cut(s) 530, 863
EcoICRI GAGCTC 1 cut(s) 379
EcoNI CCTNNNNNAGG 1 cut(s) 257
EcoRII CCWGG 2 cut(s) 96, 339
EcoRV GATATC 1 cut(s) 742
EcoT22I ATGCAT 1 cut(s) 534
EcoT38I GRGCYC 1 cut(s) 381
FaeI CATG 7 cut(s) 274, 673, 694, 716, 791, 926, 958
FaqI GGGAC 1 cut(s) 482
FatI CATG 7 cut(s) 270, 669, 690, 712, 787, 922, 954
FauNDI CATATG 1 cut(s) 648
FbaI TGATCA 3 cut(s) 484, 775, 871
FokI GGATG 4 cut(s) 25, 323, 730, 866
FriOI GRGCYC 1 cut(s) 381
FspAI RTGCGCAY 1 cut(s) 275
FspBI CTAG 2 cut(s) 12, 30
FspI TGCGCA 1 cut(s) 275
GlaI GCGC 8 cut(s) 106, 125, 136, 182, 275, 304, 353, 481
GsuI CTGGAG 1 cut(s) 332
HaeII RGCGCY 3 cut(s) 127, 184, 355
HaeIII GGCC 3 cut(s) 101, 269, 374
HapII CCGG 6 cut(s) 127, 175, 331, 458, 656, 726
HgaI GACGC 1 cut(s) 202
HhaI GCGC 8 cut(s) 107, 126, 137, 183, 276, 305, 354, 482
Hin1I GRCGYC 2 cut(s) 213, 297
Hin1II CATG 7 cut(s) 274, 673, 694, 716, 791, 926, 958
Hin6I GCGC 8 cut(s) 105, 124, 135, 181, 274, 303, 352, 480
HinP1I GCGC 8 cut(s) 105, 124, 135, 181, 274, 303, 352, 480
HincII GTYRAC 2 cut(s) 502, 757
HindII GTYRAC 2 cut(s) 502, 757
HinfI GANTC 4 cut(s) 454, 686, 784, 884
HpaII CCGG 6 cut(s) 127, 175, 331, 458, 656, 726
HphI GGTGA 4 cut(s) 217, 740, 938, 950
Hpy166II GTNNAC 2 cut(s) 502, 757
Hpy188I TCNGA 6 cut(s) 295, 310, 489, 510, 780, 933
Hpy188III TCNNGA 5 cut(s) 170, 458, 788, 917, 955
Hpy8I GTNNAC 2 cut(s) 502, 757
Hpy99I CGWCG 3 cut(s) 299, 320, 700
HpyCH4III ACNGT 1 cut(s) 734
HpyCH4IV ACGT 1 cut(s) 297
HpyCH4V TGCA 9 cut(s) 114, 147, 448, 532, 565, 610, 682, 703, 812
HpyF10VI GCNNNNNNNGC 9 cut(s) 107, 111, 132, 433, 436, 445, 562, 640, 709
HpyF3I CTNAG 1 cut(s) 509
HpySE526I ACGT 1 cut(s) 297
Hsp92I GRCGYC 2 cut(s) 213, 297
Hsp92II CATG 7 cut(s) 274, 673, 694, 716, 791, 926, 958
HspAI GCGC 8 cut(s) 105, 124, 135, 181, 274, 303, 352, 480
Kpn2I TCCGGA 1 cut(s) 457
KpnI GGTACC 1 cut(s) 656
Ksp22I TGATCA 3 cut(s) 484, 775, 871
Kzo9I GATC 9 cut(s) 231, 333, 484, 583, 775, 792, 871, 919, 928
LweI GCATC 3 cut(s) 15, 30, 799
MaeI CTAG 2 cut(s) 12, 30
MaeII ACGT 1 cut(s) 297
MaeIII GTNAC 3 cut(s) 25, 568, 728
MalI GATC 9 cut(s) 233, 335, 486, 585, 777, 794, 873, 921, 930
MboI GATC 9 cut(s) 231, 333, 484, 583, 775, 792, 871, 919, 928
MboII GAAGA 4 cut(s) 63, 536, 749, 856
MfeI CAATTG 1 cut(s) 813
MhlI GDGCHC 4 cut(s) 381, 418, 595, 636
MluCI AATT 3 cut(s) 813, 859, 967
MlyI GAGTC 1 cut(s) 893
MmeI TCCRAC 3 cut(s) 318, 333, 928
Mph1103I ATGCAT 1 cut(s) 534
MroI TCCGGA 1 cut(s) 457
MseI TTAA 2 cut(s) 708, 863
MspA1I CMGCKG 1 cut(s) 890
MspI CCGG 6 cut(s) 127, 175, 331, 458, 656, 726
MspR9I CCNGG 2 cut(s) 98, 341
MunI CAATTG 1 cut(s) 813
Mva1269I GAATGC 1 cut(s) 727
MvaI CCWGG 2 cut(s) 98, 341
MvnI CGCG 1 cut(s) 303
MwoI GCNNNNNNNGC 9 cut(s) 107, 111, 132, 433, 436, 445, 562, 640, 709
NdeI CATATG 1 cut(s) 648
NdeII GATC 9 cut(s) 231, 333, 484, 583, 775, 792, 871, 919, 928
NlaIII CATG 7 cut(s) 274, 673, 694, 716, 791, 926, 958
NlaIV GGNNCC 3 cut(s) 592, 635, 654
NmeAIII GCCGAG 2 cut(s) 400, 437
NmuCI GTSAC 2 cut(s) 25, 728
NsbI TGCGCA 1 cut(s) 275
NsiI ATGCAT 1 cut(s) 534
NspI RCATGY 1 cut(s) 673
PagI TCATGA 2 cut(s) 787, 954
PceI AGGCCT 1 cut(s) 101
PciI ACATGT 1 cut(s) 669
PcsI WCGNNNNNNNCGW 1 cut(s) 252
PctI GAATGC 1 cut(s) 727
PfeI GAWTC 3 cut(s) 454, 686, 784
PflFI GACNNNGTC 2 cut(s) 314, 386
PfoI TCCNGGA 1 cut(s) 339
PleI GAGTC 1 cut(s) 892
PpsI GAGTC 1 cut(s) 892
PscI ACATGT 1 cut(s) 669
Psp124BI GAGCTC 1 cut(s) 381
Psp6I CCWGG 2 cut(s) 96, 339
PspGI CCWGG 2 cut(s) 96, 339
PspN4I GGNNCC 3 cut(s) 592, 635, 654
PsyI GACNNNGTC 2 cut(s) 314, 386
PvuII CAGCTG 1 cut(s) 890
RsaI GTAC 4 cut(s) 119, 365, 518, 654
RsaNI GTAC 4 cut(s) 118, 364, 517, 653
SacI GAGCTC 1 cut(s) 381
SaqAI TTAA 2 cut(s) 708, 863
Sau3AI GATC 9 cut(s) 231, 333, 484, 583, 775, 792, 871, 919, 928
SchI GAGTC 1 cut(s) 893
ScrFI CCNGG 2 cut(s) 98, 341
SduI GDGCHC 4 cut(s) 381, 418, 595, 636
SfaNI GCATC 3 cut(s) 15, 30, 799
SpeI ACTAGT 1 cut(s) 11
Sse9I AATT 3 cut(s) 813, 859, 967
SseBI AGGCCT 1 cut(s) 101
SsiI CCGC 3 cut(s) 108, 301, 321
SspMI CTAG 2 cut(s) 12, 30
SstI GAGCTC 1 cut(s) 381
StuI AGGCCT 1 cut(s) 101
StyD4I CCNGG 2 cut(s) 96, 339
TaaI ACNGT 1 cut(s) 734
TaiI ACGT 1 cut(s) 300
TaqI TCGA 5 cut(s) 74, 246, 255, 360, 381
TasI AATT 3 cut(s) 813, 859, 967
TatI WGTACW 1 cut(s) 363
TauI GCSGC 2 cut(s) 110, 324
TfiI GAWTC 3 cut(s) 454, 686, 784
Tru1I TTAA 2 cut(s) 708, 863
Tru9I TTAA 2 cut(s) 708, 863
TseFI GTSAC 2 cut(s) 25, 728
Tsp45I GTSAC 2 cut(s) 25, 728
TspDTI ATGAA 5 cut(s) 527, 680, 734, 846, 943
TspGWI ACGGA 1 cut(s) 534
Tth111I GACNNNGTC 2 cut(s) 314, 386
XagI CCTNNNNNAGG 1 cut(s) 257
XceI RCATGY 1 cut(s) 673
XcmI CCANNNNNNNNNTGG 1 cut(s) 206
XspI CTAG 2 cut(s) 12, 30
ZraI GACGTC 1 cut(s) 298
Zsp2I ATGCAT 1 cut(s) 534
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.