pycom07g10150

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0011096
Physical Location & Seq
Reverse (-)
9852713 .. 9853657
945 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g10150.1

Sequence Viewer

Length: 945 bp
ATGAGTAGTAGTGGCCATAGCCATAACCACACTCATCACATTTCGACGACAACCACAACACCGTCAACAAAAGGCAACGGCAACACGCAGGCTTGCGCTGCGTGCAAATACCAGCGCAGAAAGTGCGCCCCCGACTGCATTCTAGCCCCTTACTTCCCCCACGACCGCCAGCGCCAGTTCCTCAACGCTCACAAGCTCTTTGGCGTCAGCAACATCACGAAAATCATCAAACACCTTGACCAGCCCGATAAGGATGAGGCCATGCGCACCATCATCTTCCAGTCTGACGTTCGCGCCAATGATCCTGTTGGCGGTTGTTACAGAATCATTCGCGAGATGCAGCGCTTGATCGAGTACAACAAGGCTGAGCTCGACATTGTTCTTCACCAGCTAGCCATATGCACAGCTCAGGCACAACAAGTTCATCAACAACAACATCAAAACCCGATTCAAATGCCGGAAATCGGAGATCAAAACACGTGCGATCTATTGATTAACGGGGATCCTTTGAGCTTGTGCGGCAACCCAATGGGGCATTTCCATTATATTCAACAACCTCAGCCTCCTCACCATGCAGTTGCACTGCAGCAAGAACAACCGCACGAACAACAACAACTGCCTTATGTGTTTGTTCAAAACAACGCTAACAGCAACAATAACAGTGACAATAATAATGGGGGCCCACATGTACATCCACATCATCAACATTTGCATGAAGATGTGAGCATGTGGGCCATGCAGGATTCTATGTCTTCCTTGGACATCAAGCAATGTGGTGGTGGGATGAATGGGATTGCCAATGGATGTGAGGATTTGAAACCGTTCCTTGATCAGATGGGTTGTGGTGATGATCATGAGAGAAATAATGGGGAGGTTGTCGATATTAACGGTGATCATCAACACAGGTTTGTAGTGACAAACACAGAATTACTTATGTCTTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

315

Amino Acids

35.25

Weight (kDa)

6.04

Isoelectric Point (pI)

43.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 31 - 126 1.5e-35 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 266
AccII CGCG 2 cut(s) 294, 333
AciI CCGC 4 cut(s) 166, 312, 519, 599
AclWI GGATC 3 cut(s) 296, 497, 510
AcoI YGGCCR 1 cut(s) 13
AcvI CACGTG 1 cut(s) 480
AcyI GRCGYC 1 cut(s) 204
AfaI GTAC 2 cut(s) 356, 690
AfeI AGCGCT 1 cut(s) 344
AfiI CCNNNNNNNGG 2 cut(s) 311, 464
AflIII ACRYGT 2 cut(s) 477, 685
AgsI TTSAA 4 cut(s) 452, 551, 635, 817
AluBI AGCT 5 cut(s) 196, 370, 391, 407, 513
AluI AGCT 5 cut(s) 196, 370, 391, 407, 513
Alw21I GWGCWC 1 cut(s) 372
AlwI GGATC 3 cut(s) 296, 497, 510
Aor51HI AGCGCT 1 cut(s) 344
AoxI GGCC 4 cut(s) 13, 258, 679, 732
ApaI GGGCCC 1 cut(s) 683
ApeKI GCWGC 3 cut(s) 98, 340, 586
Asp700I GAANNNNTTC 1 cut(s) 821
AspLEI GCGC 7 cut(s) 98, 117, 128, 174, 267, 296, 345
AspS9I GGNCC 3 cut(s) 679, 680, 732
AsuHPI GGTGA 4 cut(s) 377, 560, 857, 902
AsuNHI GCTAGC 1 cut(s) 391
BaeGI GKGCMC 1 cut(s) 683
BalI TGGCCA 1 cut(s) 15
BamHI GGATCC 1 cut(s) 502
BanII GRGCYC 2 cut(s) 372, 683
BbrPI CACGTG 1 cut(s) 480
BbsI GAAGAC 2 cut(s) 744, 930
Bbv12I GWGCWC 1 cut(s) 372
BbvCI CCTCAGC 1 cut(s) 558
BbvI GCAGC 3 cut(s) 85, 352, 598
BccI CCATC 2 cut(s) 278, 829
BceAI ACGGC 1 cut(s) 94
BcgI CGANNNNNNTGC 2 cut(s) 436, 470
BclI TGATCA 3 cut(s) 829, 850, 892
BfaI CTAG 2 cut(s) 143, 392
BfmI CTRYAG 1 cut(s) 584
BfoI RGCGCY 2 cut(s) 175, 346
BisI GCNGC 4 cut(s) 99, 341, 520, 587
BlpI GCTNAGC 1 cut(s) 366
BlsI GCNGC 4 cut(s) 100, 342, 521, 588
BmgT120I GGNCC 3 cut(s) 679, 680, 732
BmiI GGNNCC 3 cut(s) 504, 680, 681
BmsI GCATC 1 cut(s) 327
BmtI GCTAGC 1 cut(s) 395
BpiI GAAGAC 2 cut(s) 744, 930
Bpu10I CCTNAGC 2 cut(s) 408, 558
Bpu1102I GCTNAGC 1 cut(s) 366
BsaAI YACGTR 1 cut(s) 480
BsaHI GRCGYC 1 cut(s) 204
BsaJI CCNNGG 1 cut(s) 756
Bsc4I CCNNNNNNNGG 2 cut(s) 311, 464
Bse1I ACTGG 2 cut(s) 175, 280
Bse3DI GCAATG 1 cut(s) 776
BseDI CCNNGG 1 cut(s) 756
BseGI GGATG 4 cut(s) 259, 691, 789, 809
BseLI CCNNNNNNNGG 2 cut(s) 311, 464
BseMI GCAATG 1 cut(s) 776
BseMII CTCAG 3 cut(s) 357, 422, 572
BseNI ACTGG 2 cut(s) 175, 280
BseRI GAGGAG 1 cut(s) 555
BseSI GKGCMC 1 cut(s) 683
BseXI GCAGC 3 cut(s) 85, 352, 598
Bsh1236I CGCG 2 cut(s) 294, 333
Bsh1285I CGRYCG 1 cut(s) 166
BshFI GGCC 4 cut(s) 15, 260, 681, 734
BsiEI CGRYCG 1 cut(s) 166
BsiHKAI GWGCWC 1 cut(s) 372
BsiSI CCGG 1 cut(s) 458
BslI CCNNNNNNNGG 2 cut(s) 311, 464
BsmI GAATGC 1 cut(s) 138
BsnI GGCC 4 cut(s) 15, 260, 681, 734
Bsp120I GGGCCC 1 cut(s) 679
Bsp1286I GDGCHC 2 cut(s) 372, 683
Bsp1407I TGTACA 1 cut(s) 688
Bsp143I GATC 8 cut(s) 301, 348, 469, 484, 502, 829, 850, 892
Bsp1720I GCTNAGC 1 cut(s) 366
Bsp68I TCGCGA 1 cut(s) 333
BspACI CCGC 4 cut(s) 166, 312, 519, 599
BspANI GGCC 4 cut(s) 15, 260, 681, 734
BspCNI CTCAG 3 cut(s) 358, 421, 571
BspFNI CGCG 2 cut(s) 294, 333
BspHI TCATGA 1 cut(s) 853
BspLI GGNNCC 3 cut(s) 504, 680, 681
BspMAI CTGCAG 1 cut(s) 588
BspOI GCTAGC 1 cut(s) 395
BspPI GGATC 3 cut(s) 296, 497, 510
BsrDI GCAATG 1 cut(s) 776
BsrGI TGTACA 1 cut(s) 688
BsrI ACTGG 2 cut(s) 175, 280
BssECI CCNNGG 1 cut(s) 756
BssMI GATC 8 cut(s) 301, 348, 469, 484, 502, 829, 850, 892
BssNI GRCGYC 1 cut(s) 204
BssT1I CCWWGG 1 cut(s) 756
Bst4CI ACNGT 4 cut(s) 63, 662, 822, 890
BstACI GRCGYC 1 cut(s) 204
BstAPI GCANNNNNTGC 1 cut(s) 123
BstAUI TGTACA 1 cut(s) 688
BstBAI YACGTR 1 cut(s) 480
BstC8I GCNNGC 5 cut(s) 90, 94, 103, 170, 393
BstDEI CTNAG 3 cut(s) 366, 408, 558
BstF5I GGATG 4 cut(s) 259, 691, 789, 809
BstFNI CGCG 2 cut(s) 294, 333
BstH2I RGCGCY 2 cut(s) 175, 346
BstHHI GCGC 7 cut(s) 98, 117, 128, 174, 267, 296, 345
BstKTI GATC 8 cut(s) 304, 351, 472, 487, 505, 832, 853, 895
BstMBI GATC 8 cut(s) 301, 348, 469, 484, 502, 829, 850, 892
BstMCI CGRYCG 1 cut(s) 166
BstMWI GCNNNNNNNGC 4 cut(s) 98, 102, 123, 519
BstNSI RCATGY 2 cut(s) 689, 730
BstSFI CTRYAG 1 cut(s) 584
BstSLI GKGCMC 1 cut(s) 683
BstUI CGCG 2 cut(s) 294, 333
BstV1I GCAGC 3 cut(s) 85, 352, 598
BstV2I GAAGAC 2 cut(s) 744, 930
BstX2I RGATCY 1 cut(s) 502
BstYI RGATCY 1 cut(s) 502
BsuRI GGCC 4 cut(s) 15, 260, 681, 734
BtsCI GGATG 4 cut(s) 259, 691, 789, 809
BtsI GCAGTG 1 cut(s) 581
BtsIMutI CAGTG 2 cut(s) 581, 667
BtuMI TCGCGA 1 cut(s) 333
Cac8I GCNNGC 5 cut(s) 90, 94, 103, 170, 393
CciI TCATGA 1 cut(s) 853
CfoI GCGC 7 cut(s) 98, 117, 128, 174, 267, 296, 345
Cfr13I GGNCC 3 cut(s) 679, 680, 732
CseI GACGC 1 cut(s) 193
Csp6I GTAC 2 cut(s) 355, 689
CspCI CAANNNNNGTGG 2 cut(s) 754, 789
CviAII CATG 7 cut(s) 262, 572, 686, 713, 727, 736, 854
CviQI GTAC 2 cut(s) 355, 689
DdeI CTNAG 3 cut(s) 366, 408, 558
DpnI GATC 8 cut(s) 303, 350, 471, 486, 504, 831, 852, 894
DpnII GATC 8 cut(s) 301, 348, 469, 484, 502, 829, 850, 892
EaeI YGGCCR 1 cut(s) 13
Ecl136II GAGCTC 1 cut(s) 370
Eco130I CCWWGG 1 cut(s) 756
Eco24I GRGCYC 2 cut(s) 372, 683
Eco47III AGCGCT 1 cut(s) 344
Eco53kI GAGCTC 1 cut(s) 370
Eco72I CACGTG 1 cut(s) 480
EcoICRI GAGCTC 1 cut(s) 370
EcoO109I RGGNCCY 1 cut(s) 679
EcoT14I CCWWGG 1 cut(s) 756
EcoT38I GRGCYC 2 cut(s) 372, 683
ErhI CCWWGG 1 cut(s) 756
FaeI CATG 7 cut(s) 265, 575, 689, 716, 730, 739, 857
FatI CATG 7 cut(s) 261, 571, 685, 712, 726, 735, 853
FauNDI CATATG 1 cut(s) 398
FbaI TGATCA 3 cut(s) 829, 850, 892
Fnu4HI GCNGC 4 cut(s) 99, 341, 520, 587
FokI GGATG 4 cut(s) 266, 678, 796, 816
FriOI GRGCYC 2 cut(s) 372, 683
Fsp4HI GCNGC 4 cut(s) 99, 341, 520, 587
FspAI RTGCGCAY 1 cut(s) 266
FspBI CTAG 2 cut(s) 143, 392
FspI TGCGCA 1 cut(s) 266
GlaI GCGC 7 cut(s) 97, 116, 127, 173, 266, 295, 344
GluI GCNGC 4 cut(s) 99, 341, 520, 587
HaeII RGCGCY 2 cut(s) 175, 346
HaeIII GGCC 4 cut(s) 15, 260, 681, 734
HapII CCGG 1 cut(s) 458
HgaI GACGC 1 cut(s) 193
HhaI GCGC 7 cut(s) 98, 117, 128, 174, 267, 296, 345
Hin1I GRCGYC 1 cut(s) 204
Hin1II CATG 7 cut(s) 265, 575, 689, 716, 730, 739, 857
Hin6I GCGC 7 cut(s) 96, 115, 126, 172, 265, 294, 343
HinP1I GCGC 7 cut(s) 96, 115, 126, 172, 265, 294, 343
HincII GTYRAC 1 cut(s) 66
HindII GTYRAC 1 cut(s) 66
HinfI GANTC 3 cut(s) 324, 448, 743
HpaII CCGG 1 cut(s) 458
HphI GGTGA 4 cut(s) 377, 560, 857, 902
Hpy166II GTNNAC 1 cut(s) 66
Hpy188I TCNGA 3 cut(s) 286, 467, 834
Hpy188III TCNNGA 3 cut(s) 217, 332, 854
Hpy8I GTNNAC 1 cut(s) 66
Hpy99I CGWCG 1 cut(s) 49
HpyCH4III ACNGT 4 cut(s) 63, 662, 822, 890
HpyCH4IV ACGT 2 cut(s) 288, 479
HpyCH4V TGCA 9 cut(s) 105, 138, 340, 402, 575, 581, 586, 712, 739
HpyF10VI GCNNNNNNNGC 4 cut(s) 98, 102, 123, 519
HpyF3I CTNAG 3 cut(s) 366, 408, 558
HpySE526I ACGT 2 cut(s) 288, 479
Hsp92I GRCGYC 1 cut(s) 204
Hsp92II CATG 7 cut(s) 265, 575, 689, 716, 730, 739, 857
HspAI GCGC 7 cut(s) 96, 115, 126, 172, 265, 294, 343
Ksp22I TGATCA 3 cut(s) 829, 850, 892
Kzo9I GATC 8 cut(s) 301, 348, 469, 484, 502, 829, 850, 892
Lsp1109I GCAGC 3 cut(s) 85, 352, 598
LweI GCATC 1 cut(s) 327
MaeI CTAG 2 cut(s) 143, 392
MaeII ACGT 2 cut(s) 288, 479
MaeIII GTNAC 3 cut(s) 317, 662, 913
MalI GATC 8 cut(s) 303, 350, 471, 486, 504, 831, 852, 894
MboI GATC 8 cut(s) 301, 348, 469, 484, 502, 829, 850, 892
MboII GAAGA 5 cut(s) 268, 374, 728, 744, 930
MflI RGATCY 1 cut(s) 502
MhlI GDGCHC 2 cut(s) 372, 683
MlsI TGGCCA 1 cut(s) 15
MluCI AATT 1 cut(s) 926
MluNI TGGCCA 1 cut(s) 15
MnlI CCTC 7 cut(s) 191, 250, 567, 573, 576, 802, 865
Mox20I TGGCCA 1 cut(s) 15
MroXI GAANNNNTTC 1 cut(s) 821
MscI TGGCCA 1 cut(s) 15
MseI TTAA 2 cut(s) 495, 885
MslI CAYNNNNRTG 2 cut(s) 711, 717
Msp20I TGGCCA 1 cut(s) 15
MspI CCGG 1 cut(s) 458
Mva1269I GAATGC 1 cut(s) 138
MvnI CGCG 2 cut(s) 294, 333
MwoI GCNNNNNNNGC 4 cut(s) 98, 102, 123, 519
NdeI CATATG 1 cut(s) 398
NdeII GATC 8 cut(s) 301, 348, 469, 484, 502, 829, 850, 892
NheI GCTAGC 1 cut(s) 391
NlaIII CATG 7 cut(s) 265, 575, 689, 716, 730, 739, 857
NlaIV GGNNCC 3 cut(s) 504, 680, 681
NmuCI GTSAC 2 cut(s) 662, 913
NruI TCGCGA 1 cut(s) 333
NsbI TGCGCA 1 cut(s) 266
NspI RCATGY 2 cut(s) 689, 730
PagI TCATGA 1 cut(s) 853
PciI ACATGT 1 cut(s) 685
PctI GAATGC 1 cut(s) 138
PdmI GAANNNNTTC 1 cut(s) 821
PfeI GAWTC 3 cut(s) 324, 448, 743
PkrI GCNGC 4 cut(s) 100, 342, 521, 588
PmaCI CACGTG 1 cut(s) 480
PmlI CACGTG 1 cut(s) 480
Ppu21I YACGTR 1 cut(s) 480
PscI ACATGT 1 cut(s) 685
Psp124BI GAGCTC 1 cut(s) 372
PspCI CACGTG 1 cut(s) 480
PspN4I GGNNCC 3 cut(s) 504, 680, 681
PspOMI GGGCCC 1 cut(s) 679
PspPI GGNCC 3 cut(s) 679, 680, 732
PstI CTGCAG 1 cut(s) 588
PsuI RGATCY 1 cut(s) 502
RruI TCGCGA 1 cut(s) 333
RsaI GTAC 2 cut(s) 356, 690
RsaNI GTAC 2 cut(s) 355, 689
RseI CAYNNNNRTG 2 cut(s) 711, 717
SacI GAGCTC 1 cut(s) 372
SaqAI TTAA 2 cut(s) 495, 885
SatI GCNGC 4 cut(s) 99, 341, 520, 587
Sau3AI GATC 8 cut(s) 301, 348, 469, 484, 502, 829, 850, 892
Sau96I GGNCC 3 cut(s) 679, 680, 732
SduI GDGCHC 2 cut(s) 372, 683
SfaNI GCATC 1 cut(s) 327
SfcI CTRYAG 1 cut(s) 584
SmiMI CAYNNNNRTG 2 cut(s) 711, 717
Sse9I AATT 1 cut(s) 926
SsiI CCGC 4 cut(s) 166, 312, 519, 599
SspMI CTAG 2 cut(s) 143, 392
SstI GAGCTC 1 cut(s) 372
StyI CCWWGG 1 cut(s) 756
TaaI ACNGT 4 cut(s) 63, 662, 822, 890
TaiI ACGT 2 cut(s) 291, 482
TaqI TCGA 4 cut(s) 44, 351, 372, 879
TasI AATT 1 cut(s) 926
TatI WGTACW 2 cut(s) 354, 688
TauI GCSGC 1 cut(s) 522
TfiI GAWTC 3 cut(s) 324, 448, 743
Tru1I TTAA 2 cut(s) 495, 885
Tru9I TTAA 2 cut(s) 495, 885
TscAI CASTG 2 cut(s) 588, 667
TseFI GTSAC 2 cut(s) 662, 913
TseI GCWGC 3 cut(s) 98, 340, 586
Tsp45I GTSAC 2 cut(s) 662, 913
TspDTI ATGAA 3 cut(s) 413, 729, 800
TspRI CASTG 2 cut(s) 588, 667
XceI RCATGY 2 cut(s) 689, 730
XmnI GAANNNNTTC 1 cut(s) 821
XspI CTAG 2 cut(s) 143, 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.