Rroxscaffold_2G00101940

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0011096
Physical Location & Seq
Forward (+)
23893924 .. 23895412
1489 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00101940.1

Sequence Viewer

Length: 984 bp
ATGAGCATCACTAGTGGCAGCATCGTCACTAGAACATCATCCCCAACAACACCCAACTGCTCCTCCTCCTCTTCGACCAAAGGCAACGGCAACACCCAGGCCTGCGCCGCCTGCAAGTACCAGCGCCGGAAGTGCGCCCCCGACTGCATACTCGCCCCTTATTTCCCTCACGACCGGCAGCGCCAGTTCCTCAACGCCCACAAGCTCTTCGGCGTCAGCAACATCACCAAGATCATCAAACACCTCGACCACCGGGACAAGGAGGAGGCCATGCGCACCATCATTTTCCAGTCCGACGTCCGCGCCTCCGACCCCGTCGGCGGCTGCTACCGGATCATCCAGGAACTCCAGCGCCTCATCGAGTACAACAAGGCCGAGCTCGACATCGTCCTCCACCAACTCGCCATCTGCCGAGCACAAGCACAGCAGCAACAGCAGCAGCCCATAATGCAGCAGATTCCGGAGGTCGGGGACACTACCTGCGCTGATCAGATGATTAGTGTTGACCCTCTGAGCCTGTACGGAAACCCTATGCATTTTCATTATCTTCAGCAGCAGCCTAATGTACAAGTTACCGGGCAGCAGGATCAGGGTGCCCCCTATTTGTTTGTGCAAAATACTAATGGGAATAATGGGCATCAGCAGCAGCATATGGTACCGGAGGATATGAACATGTGGGCTATGCAGGATTCCATGTCGTCGTTGCATATTAAGCATGGGATGAATGCCGGTGACTGTGAAGATATCAAGCCCTTTGTTGACATTGCCTGTGATGATGATCAGAGGAATCATGAGATCAAGTTCCAGCCTGATGCAATTTGTGACCAGAGTGATGAAGCATTGCTGAAGATAGAGGATGGCAATTTAAAAGATGATCAGCAGAGTGAGTCAGCTGGCCAACAAGTCCATCATCATTATCAGGATCATGGTGATCTGAAAGGTGAAGCTACTTTGTTCATGACCCTCACAAATTGTAGCAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

327

Amino Acids

36.74

Weight (kDa)

5.5

Isoelectric Point (pI)

49.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 34 - 129 7.4e-36 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 300
Acc16I TGCGCA 1 cut(s) 275
Acc36I ACCTGC 1 cut(s) 488
Acc65I GGTACC 1 cut(s) 655
AccB1I GGYRCC 2 cut(s) 593, 655
AccII CGCG 1 cut(s) 303
AccIII TCCGGA 1 cut(s) 460
AciI CCGC 3 cut(s) 108, 301, 321
AclWI GGATC 3 cut(s) 341, 594, 930
AcoI YGGCCR 1 cut(s) 895
AcuI CTGAAG 2 cut(s) 533, 866
AcyI GRCGYC 2 cut(s) 213, 297
AfaI GTAC 5 cut(s) 119, 365, 521, 567, 657
AfiI CCNNNNNNNGG 3 cut(s) 259, 320, 467
AflIII ACRYGT 1 cut(s) 672
AhlI ACTAGT 1 cut(s) 11
AjnI CCWGG 2 cut(s) 96, 339
AluBI AGCT 4 cut(s) 205, 379, 893, 947
AluI AGCT 4 cut(s) 205, 379, 893, 947
Alw21I GWGCWC 2 cut(s) 381, 418
AlwI GGATC 3 cut(s) 341, 594, 930
Aor13HI TCCGGA 1 cut(s) 460
AoxI GGCC 4 cut(s) 99, 267, 372, 895
Asp718I GGTACC 1 cut(s) 655
AspLEI GCGC 8 cut(s) 107, 126, 137, 183, 276, 305, 354, 485
AsuC2I CCSGG 2 cut(s) 254, 577
AsuHPI GGTGA 4 cut(s) 217, 743, 941, 953
BaeGI GKGCMC 1 cut(s) 598
BalI TGGCCA 1 cut(s) 897
BanI GGYRCC 2 cut(s) 593, 655
BanII GRGCYC 1 cut(s) 381
Bbv12I GWGCWC 2 cut(s) 381, 418
BccI CCATC 4 cut(s) 287, 413, 851, 915
BceAI ACGGC 1 cut(s) 103
BciT130I CCWGG 2 cut(s) 98, 341
BclI TGATCA 3 cut(s) 487, 778, 874
BcnI CCSGG 2 cut(s) 254, 577
BcuI ACTAGT 1 cut(s) 11
BfaI CTAG 2 cut(s) 12, 30
BfoI RGCGCY 3 cut(s) 127, 184, 355
BfuAI ACCTGC 1 cut(s) 488
Bme1390I CCNGG 4 cut(s) 98, 254, 341, 577
BmiI GGNNCC 2 cut(s) 595, 657
BmrFI CCNGG 4 cut(s) 98, 254, 341, 577
BmsI GCATC 4 cut(s) 15, 30, 646, 802
BpmI CTGGAG 1 cut(s) 332
BpuMI CCSGG 2 cut(s) 254, 577
BsaBI GATNNNNATC 1 cut(s) 777
BsaHI GRCGYC 2 cut(s) 213, 297
BsaJI CCNNGG 1 cut(s) 96
BsaWI WCCGGW 3 cut(s) 330, 460, 658
BsaXI ACNNNNNCTCC 2 cut(s) 47, 77
Bsc4I CCNNNNNNNGG 3 cut(s) 259, 320, 467
Bse118I RCCGGY 2 cut(s) 174, 728
Bse1I ACTGG 2 cut(s) 184, 289
Bse3DI GCAATG 2 cut(s) 762, 839
Bse8I GATNNNNATC 1 cut(s) 777
BseAI TCCGGA 1 cut(s) 460
BseBI CCWGG 2 cut(s) 98, 341
BseDI CCNNGG 1 cut(s) 96
BseGI GGATG 4 cut(s) 38, 336, 726, 862
BseJI GATNNNNATC 1 cut(s) 777
BseLI CCNNNNNNNGG 3 cut(s) 259, 320, 467
BseMI GCAATG 2 cut(s) 762, 839
BseMII CTCAG 1 cut(s) 503
BseNI ACTGG 2 cut(s) 184, 289
BseRI GAGGAG 4 cut(s) 52, 55, 58, 278
BseSI GKGCMC 1 cut(s) 598
Bsh1236I CGCG 1 cut(s) 303
Bsh1285I CGRYCG 1 cut(s) 175
BshFI GGCC 4 cut(s) 101, 269, 374, 897
BshNI GGYRCC 2 cut(s) 593, 655
BsiEI CGRYCG 1 cut(s) 175
BsiHKAI GWGCWC 2 cut(s) 381, 418
BsiSI CCGG 8 cut(s) 127, 175, 253, 331, 461, 576, 659, 729
BslFI GGGAC 2 cut(s) 269, 485
BslI CCNNNNNNNGG 3 cut(s) 259, 320, 467
BsmFI GGGAC 2 cut(s) 269, 485
BsmI GAATGC 1 cut(s) 730
BsnI GGCC 4 cut(s) 101, 269, 374, 897
Bsp1286I GDGCHC 3 cut(s) 381, 418, 598
Bsp13I TCCGGA 1 cut(s) 460
Bsp1407I TGTACA 1 cut(s) 565
Bsp143I GATC 9 cut(s) 231, 333, 487, 586, 778, 795, 874, 922, 931
BspACI CCGC 3 cut(s) 108, 301, 321
BspANI GGCC 4 cut(s) 101, 269, 374, 897
BspCNI CTCAG 1 cut(s) 504
BspEI TCCGGA 1 cut(s) 460
BspFNI CGCG 1 cut(s) 303
BspHI TCATGA 2 cut(s) 790, 957
BspLI GGNNCC 2 cut(s) 595, 657
BspMI ACCTGC 1 cut(s) 488
BspPI GGATC 3 cut(s) 341, 594, 930
BspQI GCTCTTC 1 cut(s) 212
BspT107I GGYRCC 2 cut(s) 593, 655
BsrDI GCAATG 2 cut(s) 762, 839
BsrFI RCCGGY 2 cut(s) 174, 728
BsrGI TGTACA 1 cut(s) 565
BsrI ACTGG 2 cut(s) 184, 289
BssAI RCCGGY 2 cut(s) 174, 728
BssECI CCNNGG 1 cut(s) 96
BssMI GATC 9 cut(s) 231, 333, 487, 586, 778, 795, 874, 922, 931
BssNI GRCGYC 2 cut(s) 213, 297
Bst2UI CCWGG 2 cut(s) 98, 341
Bst4CI ACNGT 1 cut(s) 737
Bst6I CTCTTC 2 cut(s) 76, 212
BstACI GRCGYC 2 cut(s) 213, 297
BstAUI TGTACA 1 cut(s) 565
BstC8I GCNNGC 3 cut(s) 103, 112, 895
BstDEI CTNAG 1 cut(s) 512
BstF5I GGATG 4 cut(s) 38, 336, 726, 862
BstFNI CGCG 1 cut(s) 303
BstH2I RGCGCY 3 cut(s) 127, 184, 355
BstHHI GCGC 8 cut(s) 107, 126, 137, 183, 276, 305, 354, 485
BstKTI GATC 9 cut(s) 234, 336, 490, 589, 781, 798, 877, 925, 934
BstMBI GATC 9 cut(s) 231, 333, 487, 586, 778, 795, 874, 922, 931
BstMCI CGRYCG 1 cut(s) 175
BstMWI GCNNNNNNNGC 8 cut(s) 107, 111, 132, 433, 436, 448, 643, 712
BstNI CCWGG 2 cut(s) 98, 341
BstNSI RCATGY 1 cut(s) 676
BstSCI CCNGG 4 cut(s) 96, 252, 339, 575
BstSLI GKGCMC 1 cut(s) 598
BstUI CGCG 1 cut(s) 303
BsuRI GGCC 4 cut(s) 101, 269, 374, 897
BtsCI GGATG 4 cut(s) 38, 336, 726, 862
BveI ACCTGC 1 cut(s) 488
Cac8I GCNNGC 3 cut(s) 103, 112, 895
CciI TCATGA 2 cut(s) 790, 957
CfoI GCGC 8 cut(s) 107, 126, 137, 183, 276, 305, 354, 485
Cfr10I RCCGGY 2 cut(s) 174, 728
CseI GACGC 1 cut(s) 202
Csp6I GTAC 5 cut(s) 118, 364, 520, 566, 656
CviAII CATG 7 cut(s) 271, 673, 694, 716, 791, 926, 958
CviQI GTAC 5 cut(s) 118, 364, 520, 566, 656
DdeI CTNAG 1 cut(s) 512
DpnI GATC 9 cut(s) 233, 335, 489, 588, 780, 797, 876, 924, 933
DpnII GATC 9 cut(s) 231, 333, 487, 586, 778, 795, 874, 922, 931
DraI TTTAAA 1 cut(s) 867
EaeI YGGCCR 1 cut(s) 895
Eam1104I CTCTTC 2 cut(s) 76, 212
EarI CTCTTC 2 cut(s) 76, 212
Ecl136II GAGCTC 1 cut(s) 379
Eco147I AGGCCT 1 cut(s) 101
Eco24I GRGCYC 1 cut(s) 381
Eco32I GATATC 1 cut(s) 745
Eco53kI GAGCTC 1 cut(s) 379
Eco57I CTGAAG 2 cut(s) 533, 866
EcoICRI GAGCTC 1 cut(s) 379
EcoRII CCWGG 2 cut(s) 96, 339
EcoRV GATATC 1 cut(s) 745
EcoT22I ATGCAT 1 cut(s) 537
EcoT38I GRGCYC 1 cut(s) 381
FaeI CATG 7 cut(s) 274, 676, 697, 719, 794, 929, 961
FaqI GGGAC 2 cut(s) 269, 485
FatI CATG 7 cut(s) 270, 672, 693, 715, 790, 925, 957
FauNDI CATATG 1 cut(s) 651
FbaI TGATCA 3 cut(s) 487, 778, 874
FokI GGATG 4 cut(s) 25, 323, 733, 869
FriOI GRGCYC 1 cut(s) 381
FspAI RTGCGCAY 1 cut(s) 275
FspBI CTAG 2 cut(s) 12, 30
FspI TGCGCA 1 cut(s) 275
GlaI GCGC 8 cut(s) 106, 125, 136, 182, 275, 304, 353, 484
GsuI CTGGAG 1 cut(s) 332
HaeII RGCGCY 3 cut(s) 127, 184, 355
HaeIII GGCC 4 cut(s) 101, 269, 374, 897
HapII CCGG 8 cut(s) 127, 175, 253, 331, 461, 576, 659, 729
HgaI GACGC 1 cut(s) 202
HhaI GCGC 8 cut(s) 107, 126, 137, 183, 276, 305, 354, 485
Hin1I GRCGYC 2 cut(s) 213, 297
Hin1II CATG 7 cut(s) 274, 676, 697, 719, 794, 929, 961
Hin6I GCGC 8 cut(s) 105, 124, 135, 181, 274, 303, 352, 483
HinP1I GCGC 8 cut(s) 105, 124, 135, 181, 274, 303, 352, 483
HincII GTYRAC 2 cut(s) 505, 760
HindII GTYRAC 2 cut(s) 505, 760
HinfI GANTC 4 cut(s) 457, 689, 787, 887
HpaII CCGG 8 cut(s) 127, 175, 253, 331, 461, 576, 659, 729
HphI GGTGA 4 cut(s) 217, 743, 941, 953
Hpy166II GTNNAC 2 cut(s) 505, 760
Hpy188I TCNGA 6 cut(s) 295, 310, 492, 513, 783, 936
Hpy188III TCNNGA 5 cut(s) 170, 461, 791, 920, 958
Hpy8I GTNNAC 2 cut(s) 505, 760
Hpy99I CGWCG 3 cut(s) 299, 320, 703
HpyCH4III ACNGT 1 cut(s) 737
HpyCH4IV ACGT 1 cut(s) 297
HpyCH4V TGCA 8 cut(s) 114, 147, 451, 535, 613, 685, 706, 815
HpyF10VI GCNNNNNNNGC 8 cut(s) 107, 111, 132, 433, 436, 448, 643, 712
HpyF3I CTNAG 1 cut(s) 512
HpySE526I ACGT 1 cut(s) 297
Hsp92I GRCGYC 2 cut(s) 213, 297
Hsp92II CATG 7 cut(s) 274, 676, 697, 719, 794, 929, 961
HspAI GCGC 8 cut(s) 105, 124, 135, 181, 274, 303, 352, 483
Kpn2I TCCGGA 1 cut(s) 460
KpnI GGTACC 1 cut(s) 659
Ksp22I TGATCA 3 cut(s) 487, 778, 874
Kzo9I GATC 9 cut(s) 231, 333, 487, 586, 778, 795, 874, 922, 931
LguI GCTCTTC 1 cut(s) 212
LmnI GCTCC 1 cut(s) 65
LweI GCATC 4 cut(s) 15, 30, 646, 802
MaeI CTAG 2 cut(s) 12, 30
MaeII ACGT 1 cut(s) 297
MaeIII GTNAC 4 cut(s) 25, 571, 731, 821
MalI GATC 9 cut(s) 233, 335, 489, 588, 780, 797, 876, 924, 933
MboI GATC 9 cut(s) 231, 333, 487, 586, 778, 795, 874, 922, 931
MboII GAAGA 5 cut(s) 63, 199, 539, 752, 859
MhlI GDGCHC 3 cut(s) 381, 418, 598
MlsI TGGCCA 1 cut(s) 897
MluCI AATT 3 cut(s) 816, 862, 970
MluNI TGGCCA 1 cut(s) 897
MlyI GAGTC 1 cut(s) 896
MmeI TCCRAC 2 cut(s) 318, 333
Mox20I TGGCCA 1 cut(s) 897
Mph1103I ATGCAT 1 cut(s) 537
MroI TCCGGA 1 cut(s) 460
MscI TGGCCA 1 cut(s) 897
MseI TTAA 2 cut(s) 711, 866
Msp20I TGGCCA 1 cut(s) 897
MspA1I CMGCKG 1 cut(s) 893
MspI CCGG 8 cut(s) 127, 175, 253, 331, 461, 576, 659, 729
MspR9I CCNGG 4 cut(s) 98, 254, 341, 577
Mva1269I GAATGC 1 cut(s) 730
MvaI CCWGG 2 cut(s) 98, 341
MvnI CGCG 1 cut(s) 303
MwoI GCNNNNNNNGC 8 cut(s) 107, 111, 132, 433, 436, 448, 643, 712
NciI CCSGG 2 cut(s) 254, 577
NdeI CATATG 1 cut(s) 651
NdeII GATC 9 cut(s) 231, 333, 487, 586, 778, 795, 874, 922, 931
NlaIII CATG 7 cut(s) 274, 676, 697, 719, 794, 929, 961
NlaIV GGNNCC 2 cut(s) 595, 657
NmeAIII GCCGAG 2 cut(s) 400, 437
NmuCI GTSAC 3 cut(s) 25, 731, 821
NsbI TGCGCA 1 cut(s) 275
NsiI ATGCAT 1 cut(s) 537
NspI RCATGY 1 cut(s) 676
PagI TCATGA 2 cut(s) 790, 957
PceI AGGCCT 1 cut(s) 101
PciI ACATGT 1 cut(s) 672
PciSI GCTCTTC 1 cut(s) 212
PctI GAATGC 1 cut(s) 730
PfeI GAWTC 3 cut(s) 457, 689, 787
PflFI GACNNNGTC 2 cut(s) 314, 386
PfoI TCCNGGA 1 cut(s) 339
PleI GAGTC 1 cut(s) 895
PpsI GAGTC 1 cut(s) 895
PscI ACATGT 1 cut(s) 672
Psp124BI GAGCTC 1 cut(s) 381
Psp6I CCWGG 2 cut(s) 96, 339
PspGI CCWGG 2 cut(s) 96, 339
PspN4I GGNNCC 2 cut(s) 595, 657
PsyI GACNNNGTC 2 cut(s) 314, 386
PvuII CAGCTG 1 cut(s) 893
RsaI GTAC 5 cut(s) 119, 365, 521, 567, 657
RsaNI GTAC 5 cut(s) 118, 364, 520, 566, 656
SacI GAGCTC 1 cut(s) 381
SapI GCTCTTC 1 cut(s) 212
SaqAI TTAA 2 cut(s) 711, 866
Sau3AI GATC 9 cut(s) 231, 333, 487, 586, 778, 795, 874, 922, 931
SchI GAGTC 1 cut(s) 896
ScrFI CCNGG 4 cut(s) 98, 254, 341, 577
SduI GDGCHC 3 cut(s) 381, 418, 598
SetI ASST 9 cut(s) 207, 246, 300, 381, 468, 482, 895, 943, 949
SfaNI GCATC 4 cut(s) 15, 30, 646, 802
SpeI ACTAGT 1 cut(s) 11
Sse9I AATT 3 cut(s) 816, 862, 970
SseBI AGGCCT 1 cut(s) 101
SsiI CCGC 3 cut(s) 108, 301, 321
SspMI CTAG 2 cut(s) 12, 30
SstI GAGCTC 1 cut(s) 381
StuI AGGCCT 1 cut(s) 101
StyD4I CCNGG 4 cut(s) 96, 252, 339, 575
TaaI ACNGT 1 cut(s) 737
TaiI ACGT 1 cut(s) 300
TaqI TCGA 4 cut(s) 74, 246, 360, 381
TasI AATT 3 cut(s) 816, 862, 970
TatI WGTACW 2 cut(s) 363, 565
TauI GCSGC 2 cut(s) 110, 324
TfiI GAWTC 3 cut(s) 457, 689, 787
Tru1I TTAA 2 cut(s) 711, 866
Tru9I TTAA 2 cut(s) 711, 866
TseFI GTSAC 3 cut(s) 25, 731, 821
Tsp45I GTSAC 3 cut(s) 25, 731, 821
TspDTI ATGAA 5 cut(s) 530, 683, 737, 849, 946
TspGWI ACGGA 1 cut(s) 537
Tth111I GACNNNGTC 2 cut(s) 314, 386
XceI RCATGY 1 cut(s) 676
XspI CTAG 2 cut(s) 12, 30
ZraI GACGTC 1 cut(s) 298
Zsp2I ATGCAT 1 cut(s) 537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.